Strain Fitness in Sphingobium sp. HT1-2 around GFF1352

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,371,497	+		GFF1351	0.42	-0.3
1,371,505	-		GFF1351	0.43	-1.1
1,371,507	+		GFF1351	0.43	+0.5
1,371,507	+		GFF1351	0.43	+1.1
1,371,507	+		GFF1351	0.43	-0.3
1,371,507	+		GFF1351	0.43	-0.7
1,371,519	+		GFF1351	0.43	-0.8
1,371,519	+		GFF1351	0.43	+0.2
1,371,527	-		GFF1351	0.44	-1.5
1,371,529	-		GFF1351	0.44	+0.5
1,371,529	-		GFF1351	0.44	+0.5
1,371,529	-		GFF1351	0.44	-2.4
1,371,534	-		GFF1351	0.44	-0.5
1,371,537	-		GFF1351	0.45	+0.4
1,371,549	+		GFF1351	0.45	-0.3
1,371,554	-		GFF1351	0.46	-0.3
1,371,554	-		GFF1351	0.46	+0.9
1,371,569	-		GFF1351	0.46	-0.8
1,371,583	-		GFF1351	0.47	+0.9
1,371,596	-		GFF1351	0.48	-0.3
1,371,597	+		GFF1351	0.48	+1.5
1,371,597	+		GFF1351	0.48	-0.7
1,371,597	+		GFF1351	0.48	+1.5
1,371,597	+		GFF1351	0.48	-0.9
1,371,597	+		GFF1351	0.48	+0.0
1,371,597	+		GFF1351	0.48	-0.4
1,371,597	+		GFF1351	0.48	-1.6
1,371,597	+		GFF1351	0.48	-0.2
1,371,605	-		GFF1351	0.49	-0.7
1,371,605	-		GFF1351	0.49	-0.6
1,371,605	-		GFF1351	0.49	-0.1
1,371,605	-		GFF1351	0.49	-0.8
1,371,605	-		GFF1351	0.49	+0.5
1,371,605	-		GFF1351	0.49	-0.0
1,371,605	-		GFF1351	0.49	+0.6
1,371,605	-		GFF1351	0.49	+0.2
1,371,605	-		GFF1351	0.49	-0.5
1,371,605	-		GFF1351	0.49	+0.5
1,371,614	-		GFF1351	0.49	-0.1
1,371,633	-		GFF1351	0.50	-1.2
1,371,636	+		GFF1351	0.50	-0.8
1,371,652	-		GFF1351	0.51	-0.5
1,371,652	-		GFF1351	0.51	-0.4
1,371,673	+		GFF1351	0.53	-1.4
1,371,702	-		GFF1351	0.54	-0.2
1,371,708	-		GFF1351	0.55	+0.4
1,371,709	+		GFF1351	0.55	+0.7
1,371,712	+		GFF1351	0.55	+0.2
1,371,717	-		GFF1351	0.55	+1.7
1,371,731	-		GFF1351	0.56	-1.2
1,371,744	-		GFF1351	0.57	+0.6
1,371,754	-		GFF1351	0.57	+0.1
1,371,759	-		GFF1351	0.58	-0.1
1,371,765	-		GFF1351	0.58	+0.1
1,371,799	-		GFF1351	0.60	+0.3
1,371,807	+		GFF1351	0.60	-0.9
1,371,822	+		GFF1351	0.61	-1.1
1,371,822	+		GFF1351	0.61	-0.1
1,371,825	-		GFF1351	0.61	+0.6
1,371,830	-		GFF1351	0.62	+0.4
1,371,830	-		GFF1351	0.62	-0.4
1,371,830	-		GFF1351	0.62	-0.7
1,371,830	-		GFF1351	0.62	+0.1
1,371,832	-		GFF1351	0.62	-0.7
1,371,832	-		GFF1351	0.62	-1.5
1,371,832	-		GFF1351	0.62	-0.1
1,371,836	-		GFF1351	0.62	+0.8
1,371,838	-		GFF1351	0.62	+0.9
1,371,838	-		GFF1351	0.62	+0.2
1,371,839	+		GFF1351	0.62	-0.9
1,371,873	+		GFF1351	0.64	+0.4
1,371,878	+		GFF1351	0.65	-1.0
1,371,878	+		GFF1351	0.65	-0.7
1,371,881	-		GFF1351	0.65	-1.1
1,371,907	+		GFF1351	0.66	+0.4
1,371,907	+		GFF1351	0.66	+0.9
1,371,920	-		GFF1351	0.67	+1.4
1,371,921	+		GFF1351	0.67	-0.5
1,371,929	+		GFF1351	0.68	+0.1
1,371,929	+		GFF1351	0.68	+0.0
1,371,929	+		GFF1351	0.68	-0.1
1,371,930	-		GFF1351	0.68	-0.9
1,371,937	-		GFF1351	0.68	-0.7
1,371,937	-		GFF1351	0.68	+0.2
1,371,947	+		GFF1351	0.69	-1.3
1,371,950	-		GFF1351	0.69	-0.7
1,371,952	+		GFF1351	0.69	-0.9
1,371,961	-		GFF1351	0.69	+0.9
1,372,011	+		GFF1351	0.72	-0.3
1,372,018	+		GFF1351	0.73	+0.2
1,372,026	-		GFF1351	0.73	-1.4
1,372,029	-		GFF1351	0.73	+0.5
1,372,055	-		GFF1351	0.75	+0.1
1,372,083	-		GFF1351	0.77	-0.4
1,372,149	+		GFF1351	0.80	-0.4
1,372,179	-		GFF1351	0.82	+0.2
1,372,190	-		GFF1351	0.83	-2.3
1,372,198	+		GFF1351	0.83	-1.6
1,372,202	+		GFF1351	0.84	-2.0
1,372,213	+		GFF1351	0.84	-0.1
1,372,247	+		GFF1351	0.86	-0.9
1,372,250	-		GFF1351	0.86	-0.5
1,372,250	-		GFF1351	0.86	-1.1
1,372,267	-		GFF1351	0.87	-0.3
1,372,272	-		GFF1351	0.88	+0.1
1,372,303	+		GFF1351	0.89	-0.0
1,372,303	+		GFF1351	0.89	+0.9
1,372,312	+				-0.5
1,372,312	+				+0.6
1,372,320	-				+1.0
1,372,330	+				-0.5
1,372,334	+				-1.6
1,372,336	+				+0.3
1,372,344	-				+0.8
1,372,344	-				+1.3
1,372,344	-				+0.4
1,372,352	+				-0.7
1,372,359	+				-0.7
1,372,359	+				-0.3
1,372,363	-				-0.3
1,372,367	+				+0.2
1,372,367	+				+0.0
1,372,367	-				+0.3
1,372,367	-				-0.8
1,372,367	-				+0.2
1,372,367	-				-1.3
1,372,367	-				-0.3
1,372,369	+				-0.7
1,372,369	+				+0.6
1,372,372	+				+1.1
1,372,377	-				+0.8
1,372,391	+				-0.2
1,372,399	-				+1.2
1,372,399	-				+1.6
1,372,399	-				-0.1
1,372,409	-				-0.7
1,372,415	+				-0.8
1,372,415	+				-2.9
1,372,415	+				-1.3
1,372,427	+				-0.1
1,372,429	+				-1.2
1,372,429	+				+0.3
1,372,429	+				-0.1
1,372,429	+				-0.0
1,372,429	+				+0.5
1,372,429	+				-0.6
1,372,429	+				-0.1
1,372,429	+				-1.0
1,372,429	+				-0.0
1,372,429	+				+0.3
1,372,429	+				-0.5
1,372,429	+				+0.3
1,372,432	-				-0.9
1,372,437	+				-1.2
1,372,437	-				-0.3
1,372,437	-				-0.9
1,372,437	-				-1.4
1,372,437	-				+1.5
1,372,437	-				+0.0
1,372,437	-				-0.6
1,372,437	-				-1.3
1,372,437	-				-1.4
1,372,437	-				-2.1
1,372,437	-				-0.4
1,372,437	-				-0.3
1,372,437	-				-0.3
1,372,439	+				-1.8
1,372,447	-				+0.0
1,372,461	+				+1.0
1,372,486	-				+0.0
1,372,491	-				+0.6
1,372,497	-				-0.5
1,372,499	-				-0.4
1,372,537	+				-1.5
1,372,587	-				+0.2
1,372,593	-				-0.9
1,372,593	-				+0.5
1,372,601	-				-1.1
1,372,613	-				+0.0
1,372,622	+				+0.3
1,372,627	+				+0.7
1,372,627	+				+1.3
1,372,635	-				+0.3
1,372,635	-				-1.0
1,372,635	-				+0.2
1,372,635	-				+0.5
1,372,656	-				-1.5
1,372,658	+				+0.0
1,372,658	+				-0.0
1,372,658	+				-1.4
1,372,685	-		GFF1352	0.11	+0.3
1,372,690	+		GFF1352	0.11	+1.0
1,372,690	-		GFF1352	0.11	+0.9
1,372,697	-		GFF1352	0.11	-0.1
1,372,699	+		GFF1352	0.11	-0.2
1,372,707	-		GFF1352	0.12	-0.1
1,372,717	-		GFF1352	0.12	-0.1
1,372,717	-		GFF1352	0.12	-0.1
1,372,717	-		GFF1352	0.12	-1.2
1,372,717	-		GFF1352	0.12	-1.4
1,372,717	-		GFF1352	0.12	+1.3
1,372,735	+		GFF1352	0.13	-0.4
1,372,768	-		GFF1352	0.15	-0.5
1,372,773	-		GFF1352	0.15	-2.3
1,372,785	+		GFF1352	0.16	+1.4
1,372,795	+		GFF1352	0.17	-0.4
1,372,798	-		GFF1352	0.17	-0.3
1,372,806	+		GFF1352	0.17	-1.3
1,372,806	+		GFF1352	0.17	+1.0
1,372,814	+		GFF1352	0.18	+0.0
1,372,825	-		GFF1352	0.18	-0.2
1,372,830	-		GFF1352	0.19	+0.8
1,372,878	+		GFF1352	0.21	-0.7
1,372,886	-		GFF1352	0.22	-1.4
1,372,904	-		GFF1352	0.23	+0.0
1,372,904	-		GFF1352	0.23	-0.7
1,372,910	-		GFF1352	0.23	+0.0
1,372,931	-		GFF1352	0.24	-0.4
1,372,931	-		GFF1352	0.24	-1.5
1,372,931	-		GFF1352	0.24	+0.8
1,372,941	-		GFF1352	0.25	+0.2
1,372,947	-		GFF1352	0.25	+0.5
1,372,957	-		GFF1352	0.26	+0.7
1,372,965	-		GFF1352	0.26	-0.1
1,372,972	-		GFF1352	0.26	-0.4
1,372,976	-		GFF1352	0.27	-0.1
1,372,995	+		GFF1352	0.28	-0.3
1,372,995	+		GFF1352	0.28	-0.8
1,373,005	+		GFF1352	0.28	-2.2
1,373,009	+		GFF1352	0.28	+0.3
1,373,010	+		GFF1352	0.28	+0.3
1,373,018	-		GFF1352	0.29	+0.8
1,373,018	-		GFF1352	0.29	-0.1
1,373,026	+		GFF1352	0.29	-0.3
1,373,028	+		GFF1352	0.29	-0.8
1,373,028	+		GFF1352	0.29	-1.7
1,373,034	-		GFF1352	0.30	-2.2
1,373,034	-		GFF1352	0.30	-0.1
1,373,034	-		GFF1352	0.30	-0.2
1,373,036	-		GFF1352	0.30	-0.2
1,373,037	+		GFF1352	0.30	-0.1
1,373,049	-		GFF1352	0.31	+0.7
1,373,051	-		GFF1352	0.31	-1.8
1,373,051	-		GFF1352	0.31	+0.6
1,373,073	-		GFF1352	0.32	-0.5
1,373,073	-		GFF1352	0.32	-0.9
1,373,080	-		GFF1352	0.32	-0.3
1,373,080	-		GFF1352	0.32	+0.6
1,373,080	-		GFF1352	0.32	-1.1
1,373,111	-		GFF1352	0.34	-1.1
1,373,117	-		GFF1352	0.34	+0.2
1,373,119	+		GFF1352	0.34	-1.7
1,373,161	+		GFF1352	0.37	+0.3
1,373,168	-		GFF1352	0.37	-0.2
1,373,175	+		GFF1352	0.38	-0.1
1,373,183	-		GFF1352	0.38	+0.5
1,373,192	-		GFF1352	0.39	+0.1
1,373,194	+		GFF1352	0.39	-0.3
1,373,194	+		GFF1352	0.39	-0.2
1,373,194	+		GFF1352	0.39	-0.2
1,373,198	-		GFF1352	0.39	+0.0
1,373,202	-		GFF1352	0.39	+1.1
1,373,202	-		GFF1352	0.39	-1.0
1,373,202	-		GFF1352	0.39	+0.7
1,373,202	-		GFF1352	0.39	+0.5
1,373,202	-		GFF1352	0.39	-0.1
1,373,216	+		GFF1352	0.40	-1.4
1,373,218	+		GFF1352	0.40	-0.1
1,373,224	-		GFF1352	0.40	+0.1
1,373,224	-		GFF1352	0.40	-0.9
1,373,237	-		GFF1352	0.41	+0.3
1,373,245	-		GFF1352	0.41	+1.3
1,373,250	-		GFF1352	0.42	-1.1
1,373,250	-		GFF1352	0.42	+0.4
1,373,255	-		GFF1352	0.42	-1.3
1,373,257	+		GFF1352	0.42	-1.2
1,373,262	+		GFF1352	0.42	+0.2
1,373,265	-		GFF1352	0.43	-0.2
1,373,294	-		GFF1352	0.44	+0.6
1,373,296	-		GFF1352	0.44	-0.7
1,373,309	+		GFF1352	0.45	-0.4
1,373,317	-		GFF1352	0.45	-2.2
1,373,319	+		GFF1352	0.46	+0.6
1,373,319	+		GFF1352	0.46	-0.1
1,373,319	-		GFF1352	0.46	-1.4
1,373,324	+		GFF1352	0.46	+0.5
1,373,348	+		GFF1352	0.47	+1.1
1,373,348	+		GFF1352	0.47	-0.3
1,373,356	-		GFF1352	0.48	+0.6
1,373,356	-		GFF1352	0.48	+0.6
1,373,356	-		GFF1352	0.48	-0.7
1,373,356	-		GFF1352	0.48	-0.3
1,373,356	-		GFF1352	0.48	-0.1
1,373,356	-		GFF1352	0.48	-1.2
1,373,356	-		GFF1352	0.48	+0.0
1,373,361	-		GFF1352	0.48	-1.3
1,373,361	-		GFF1352	0.48	-0.7
1,373,361	-		GFF1352	0.48	+0.1
1,373,370	+		GFF1352	0.48	+0.8
1,373,414	-		GFF1352	0.51	+0.3
1,373,419	+		GFF1352	0.51	+0.5
1,373,423	-		GFF1352	0.51	+0.3
1,373,429	-		GFF1352	0.52	+1.4
1,373,430	-		GFF1352	0.52	-0.3
1,373,443	+		GFF1352	0.52	-1.1
1,373,451	-		GFF1352	0.53	+0.9
1,373,464	-		GFF1352	0.53	-0.2
1,373,481	-		GFF1352	0.54	+0.5
1,373,498	+		GFF1352	0.55	-0.5
1,373,502	-		GFF1352	0.56	-0.5
1,373,505	+		GFF1352	0.56	+0.6
1,373,517	+		GFF1352	0.56	-0.3
1,373,525	-		GFF1352	0.57	+0.6
1,373,530	-		GFF1352	0.57	+0.4
1,373,534	+		GFF1352	0.57	-0.9
1,373,534	+		GFF1352	0.57	-1.0
1,373,550	-		GFF1352	0.58	-0.1
1,373,557	-		GFF1352	0.59	-0.3
1,373,564	+		GFF1352	0.59	+0.3
1,373,572	-		GFF1352	0.59	+0.3
1,373,575	+		GFF1352	0.60	+0.9
1,373,588	+		GFF1352	0.60	-1.7
1,373,605	+		GFF1352	0.61	+0.0
1,373,618	+		GFF1352	0.62	+0.1
1,373,618	+		GFF1352	0.62	+0.2
1,373,620	+		GFF1352	0.62	-1.7
1,373,620	+		GFF1352	0.62	+0.6
1,373,620	+		GFF1352	0.62	-0.3
1,373,620	+		GFF1352	0.62	-0.2
1,373,620	+		GFF1352	0.62	-0.7
1,373,621	+		GFF1352	0.62	+1.1
1,373,621	-		GFF1352	0.62	-0.6
1,373,628	-		GFF1352	0.63	-0.8
1,373,628	-		GFF1352	0.63	-1.8
1,373,633	-		GFF1352	0.63	-1.8
1,373,643	-		GFF1352	0.63	+0.3
1,373,648	-		GFF1352	0.64	+0.0
1,373,656	-		GFF1352	0.64	+0.2
1,373,705	+		GFF1352	0.67	+1.0
1,373,707	-		GFF1352	0.67	-2.0
1,373,717	-		GFF1352	0.67	+1.1
1,373,728	+		GFF1352	0.68	-0.6
1,373,752	+		GFF1352	0.69	-0.6
1,373,759	+		GFF1352	0.70	+1.6
1,373,774	+		GFF1352	0.71	-1.3
1,373,775	+		GFF1352	0.71	-0.1
1,373,778	-		GFF1352	0.71	+0.0
1,373,782	-		GFF1352	0.71	+0.9
1,373,797	+		GFF1352	0.72	+1.2
1,373,804	-		GFF1352	0.72	-0.6
1,373,805	-		GFF1352	0.72	-0.5
1,373,833	+		GFF1352	0.74	+0.7
1,373,846	-		GFF1352	0.75	+0.2
1,373,857	+		GFF1352	0.75	-2.3
1,373,857	+		GFF1352	0.75	-1.8
1,373,865	-		GFF1352	0.76	+0.3
1,373,865	-		GFF1352	0.76	+0.1
1,373,867	+		GFF1352	0.76	-2.6
1,373,869	-		GFF1352	0.76	+0.1
1,373,872	+		GFF1352	0.76	+0.5
1,373,875	-		GFF1352	0.76	+1.7
1,373,875	-		GFF1352	0.76	-0.4
1,373,880	-		GFF1352	0.76	-0.1
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