Strain Fitness in Sphingobium sp. HT1-2 around GFF1325

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,351,896	+		GFF1323	0.82	+0.2
1,351,903	+		GFF1323	0.83	+0.1
1,351,908	+		GFF1323	0.83	+0.2
1,351,913	+		GFF1323	0.84	-0.3
1,351,916	-		GFF1323	0.84	+0.4
1,351,916	-		GFF1323	0.84	+0.3
1,351,921	-		GFF1323	0.85	-2.8
1,351,921	-		GFF1323	0.85	+0.4
1,351,926	-		GFF1323	0.85	-1.5
1,351,937	+		GFF1323	0.86	+1.2
1,351,937	+		GFF1323	0.86	-0.4
1,351,958	+		GFF1323	0.89	+0.1
1,351,958	+		GFF1323	0.89	+1.3
1,351,958	+		GFF1323	0.89	-0.3
1,351,958	+		GFF1323	0.89	+0.1
1,351,958	+		GFF1323	0.89	-1.1
1,351,965	+		GFF1323	0.89	-0.1
1,351,966	-		GFF1323	0.89	-0.3
1,351,966	-		GFF1323	0.89	-0.9
1,351,966	-		GFF1323	0.89	+0.5
1,351,966	-		GFF1323	0.89	+1.3
1,351,966	-		GFF1323	0.89	+1.8
1,352,198	-				+0.3
1,352,260	+		GFF1324	0.14	+0.1
1,352,266	-		GFF1324	0.15	-0.1
1,352,268	-		GFF1324	0.15	+0.2
1,352,273	-		GFF1324	0.16	-0.5
1,352,290	-		GFF1324	0.19	-0.1
1,352,290	-		GFF1324	0.19	-2.2
1,352,326	+		GFF1324	0.24	-0.9
1,352,335	+		GFF1324	0.26	+1.0
1,352,335	+		GFF1324	0.26	+0.5
1,352,356	-		GFF1324	0.29	-0.9
1,352,364	-		GFF1324	0.30	+0.3
1,352,382	-		GFF1324	0.33	-1.0
1,352,403	+		GFF1324	0.37	-2.1
1,352,411	+		GFF1324	0.38	-0.5
1,352,416	+		GFF1324	0.39	-2.3
1,352,419	-		GFF1324	0.39	-0.9
1,352,450	+		GFF1324	0.44	-0.4
1,352,450	+		GFF1324	0.44	+0.9
1,352,450	+		GFF1324	0.44	+0.9
1,352,450	+		GFF1324	0.44	-0.2
1,352,450	+		GFF1324	0.44	+0.8
1,352,450	+		GFF1324	0.44	-1.1
1,352,458	-		GFF1324	0.45	+0.8
1,352,458	-		GFF1324	0.45	+0.2
1,352,458	-		GFF1324	0.45	+1.7
1,352,458	-		GFF1324	0.45	-0.4
1,352,458	-		GFF1324	0.45	+0.4
1,352,458	-		GFF1324	0.45	-0.5
1,352,458	-		GFF1324	0.45	-0.8
1,352,473	-		GFF1324	0.48	+0.7
1,352,474	+		GFF1324	0.48	+0.7
1,352,474	+		GFF1324	0.48	+0.2
1,352,484	-		GFF1324	0.50	+1.2
1,352,547	-		GFF1324	0.60	-1.1
1,352,563	+		GFF1324	0.62	+0.5
1,352,573	+		GFF1324	0.64	+0.9
1,352,573	+		GFF1324	0.64	+0.9
1,352,573	+		GFF1324	0.64	-0.7
1,352,573	+		GFF1324	0.64	+0.2
1,352,573	+		GFF1324	0.64	-0.4
1,352,575	-		GFF1324	0.64	-2.3
1,352,581	-		GFF1324	0.65	-0.5
1,352,581	-		GFF1324	0.65	+0.3
1,352,581	-		GFF1324	0.65	+0.6
1,352,581	-		GFF1324	0.65	+0.4
1,352,581	-		GFF1324	0.65	-1.2
1,352,581	-		GFF1324	0.65	+0.4
1,352,584	+		GFF1324	0.66	-2.5
1,352,587	-		GFF1324	0.66	-0.7
1,352,590	-		GFF1324	0.67	-1.2
1,352,608	+		GFF1324	0.69	+0.4
1,352,614	-		GFF1324	0.70	+0.7
1,352,614	-		GFF1324	0.70	+0.7
1,352,614	-		GFF1324	0.70	+0.3
1,352,653	+		GFF1324	0.77	+0.6
1,352,658	+		GFF1324	0.77	+1.3
1,352,658	+		GFF1324	0.77	+1.5
1,352,661	-		GFF1324	0.78	-0.5
1,352,666	-		GFF1324	0.79	-0.3
1,352,666	-		GFF1324	0.79	+0.5
1,352,671	-		GFF1324	0.79	-0.2
1,352,699	+		GFF1324	0.84	-1.4
1,352,725	+		GFF1324	0.88	-1.3
1,352,742	-				-0.4
1,352,743	+				+0.4
1,352,744	+				+1.3
1,352,752	+				-0.3
1,352,752	+				-0.5
1,352,752	+				-1.2
1,352,760	-				+0.3
1,352,803	-				+0.6
1,352,817	-				-0.9
1,352,819	+				+1.4
1,352,820	-				-0.4
1,352,826	+				-0.4
1,352,826	+				-0.8
1,352,834	+				+0.5
1,352,834	+				-0.8
1,352,834	+				-0.7
1,352,834	-				-0.4
1,352,842	-				-0.3
1,352,844	+				+0.4
1,352,844	-				-0.1
1,352,844	-				+0.7
1,352,844	-				+0.0
1,352,854	+				-0.2
1,352,855	+				+0.3
1,352,893	+				-0.2
1,352,899	+				-1.3
1,352,902	-				-1.3
1,352,914	-				-0.5
1,352,934	-		GFF1325	0.18	-2.0
1,352,941	+		GFF1325	0.21	-1.3
1,352,941	-		GFF1325	0.21	+1.4
1,352,946	+		GFF1325	0.23	-0.3
1,352,946	+		GFF1325	0.23	-1.8
1,352,954	-		GFF1325	0.27	-0.1
1,353,012	+		GFF1325	0.54	-0.8
1,353,116	+				+0.9
1,353,116	+				-0.7
1,353,165	+				-0.4
1,353,173	-				-0.4
1,353,173	-				-0.3
1,353,173	-				+0.8
1,353,173	-				-0.6
1,353,191	+				-1.3
1,353,237	-				-1.0
1,353,237	-				-0.2
1,353,246	+				-1.0
1,353,259	-				+0.2
1,353,266	-				+0.1
1,353,296	-				-0.5
1,353,315	+		GFF1326	0.10	-1.5
1,353,315	+		GFF1326	0.10	-0.7
1,353,323	-		GFF1326	0.11	+0.3
1,353,337	+		GFF1326	0.12	+0.0
1,353,358	-		GFF1326	0.13	-0.3
1,353,359	-		GFF1326	0.13	-0.1
1,353,380	+		GFF1326	0.14	+0.0
1,353,388	-		GFF1326	0.14	+0.7
1,353,403	-		GFF1326	0.15	-1.7
1,353,428	+		GFF1326	0.16	-0.7
1,353,443	+		GFF1326	0.17	+0.3
1,353,443	-		GFF1326	0.17	+0.5
1,353,460	+		GFF1326	0.17	-0.7
1,353,463	+		GFF1326	0.18	-1.5
1,353,471	-		GFF1326	0.18	+1.3
1,353,476	+		GFF1326	0.18	+0.4
1,353,476	+		GFF1326	0.18	+1.3
1,353,491	+		GFF1326	0.19	-0.1
1,353,501	+		GFF1326	0.19	-2.1
1,353,504	-		GFF1326	0.19	-0.3
1,353,513	+		GFF1326	0.20	-0.7
1,353,521	-		GFF1326	0.20	+0.4
1,353,531	+		GFF1326	0.21	+0.1
1,353,531	+		GFF1326	0.21	-0.5
1,353,531	+		GFF1326	0.21	+0.2
1,353,531	+		GFF1326	0.21	-0.1
1,353,531	+		GFF1326	0.21	-0.4
1,353,531	+		GFF1326	0.21	-1.1
1,353,531	+		GFF1326	0.21	-0.4
1,353,536	+		GFF1326	0.21	-0.6
1,353,539	-		GFF1326	0.21	-1.3
1,353,539	-		GFF1326	0.21	-1.8
1,353,539	-		GFF1326	0.21	-0.4
1,353,539	-		GFF1326	0.21	+1.7
1,353,539	-		GFF1326	0.21	+0.1
1,353,539	-		GFF1326	0.21	-0.1
1,353,539	-		GFF1326	0.21	-1.1
1,353,544	-		GFF1326	0.21	-0.2
1,353,552	+		GFF1326	0.22	-0.1
1,353,552	+		GFF1326	0.22	-0.2
1,353,560	-		GFF1326	0.22	+0.8
1,353,560	-		GFF1326	0.22	+0.3
1,353,560	-		GFF1326	0.22	+0.7
1,353,562	+		GFF1326	0.22	-2.3
1,353,562	+		GFF1326	0.22	-0.7
1,353,570	-		GFF1326	0.23	-0.2
1,353,570	-		GFF1326	0.23	+0.3
1,353,571	+		GFF1326	0.23	-0.5
1,353,635	-		GFF1326	0.26	+0.6
1,353,635	-		GFF1326	0.26	-0.2
1,353,635	-		GFF1326	0.26	-1.4
1,353,644	-		GFF1326	0.26	-1.5
1,353,669	+		GFF1326	0.27	-1.1
1,353,670	-		GFF1326	0.27	-0.7
1,353,672	-		GFF1326	0.27	-2.3
1,353,677	-		GFF1326	0.28	-0.4
1,353,694	-		GFF1326	0.29	+0.6
1,353,723	+		GFF1326	0.30	-0.9
1,353,723	+		GFF1326	0.30	-0.3
1,353,726	-		GFF1326	0.30	-0.3
1,353,731	-		GFF1326	0.30	+0.2
1,353,731	-		GFF1326	0.30	-0.3
1,353,759	+		GFF1326	0.32	+0.8
1,353,759	+		GFF1326	0.32	-0.0
1,353,759	+		GFF1326	0.32	-0.3
1,353,759	+		GFF1326	0.32	-0.7
1,353,760	+		GFF1326	0.32	-2.1
1,353,768	-		GFF1326	0.32	-2.0
1,353,768	-		GFF1326	0.32	+0.1
1,353,769	-		GFF1326	0.32	-0.1
1,353,769	-		GFF1326	0.32	-0.7
1,353,769	-		GFF1326	0.32	+0.7
1,353,774	-		GFF1326	0.32	-1.2
1,353,809	-		GFF1326	0.34	+0.3
1,353,811	+		GFF1326	0.34	-1.6
1,353,811	+		GFF1326	0.34	+0.7
1,353,811	+		GFF1326	0.34	-1.3
1,353,814	-		GFF1326	0.34	+0.4
1,353,819	-		GFF1326	0.34	+0.2
1,353,819	-		GFF1326	0.34	-0.5
1,353,819	-		GFF1326	0.34	-1.1
1,353,819	-		GFF1326	0.34	+0.8
1,353,819	-		GFF1326	0.34	-2.1
1,353,819	-		GFF1326	0.34	+0.7
1,353,826	+		GFF1326	0.35	-2.7
1,353,826	+		GFF1326	0.35	-0.3
1,353,834	-		GFF1326	0.35	-3.0
1,353,834	-		GFF1326	0.35	+1.1
1,353,851	-		GFF1326	0.36	-0.1
1,353,856	-		GFF1326	0.36	-0.6
1,353,867	+		GFF1326	0.37	+0.1
1,353,875	-		GFF1326	0.37	+1.3
1,353,880	+		GFF1326	0.37	-0.4
1,353,880	+		GFF1326	0.37	+1.6
1,353,884	+		GFF1326	0.38	+0.0
1,353,884	+		GFF1326	0.38	-1.1
1,353,888	-		GFF1326	0.38	-0.5
1,353,902	+		GFF1326	0.38	+0.1
1,353,927	+		GFF1326	0.40	+0.6
1,353,935	-		GFF1326	0.40	+0.5
1,353,935	-		GFF1326	0.40	+0.0
1,353,935	-		GFF1326	0.40	+0.3
1,353,942	+		GFF1326	0.40	+0.4
1,353,951	-		GFF1326	0.41	+0.6
1,353,959	-		GFF1326	0.41	-1.7
1,353,971	-		GFF1326	0.42	-0.6
1,353,993	+		GFF1326	0.43	+0.2
1,353,993	+		GFF1326	0.43	-0.4
1,353,996	-		GFF1326	0.43	+0.3
1,353,998	+		GFF1326	0.43	-0.7
1,353,998	+		GFF1326	0.43	+0.4
1,353,998	+		GFF1326	0.43	-1.1
1,353,998	+		GFF1326	0.43	-2.4
1,353,998	+		GFF1326	0.43	+0.7
1,353,998	+		GFF1326	0.43	-0.3
1,353,998	+		GFF1326	0.43	+0.3
1,353,998	+		GFF1326	0.43	-0.1
1,353,998	+		GFF1326	0.43	+0.1
1,353,998	+		GFF1326	0.43	-1.7
1,353,998	+		GFF1326	0.43	-0.3
1,353,998	+		GFF1326	0.43	+0.4
1,354,006	-		GFF1326	0.43	+0.2
1,354,006	-		GFF1326	0.43	-2.8
1,354,006	-		GFF1326	0.43	-1.2
1,354,006	-		GFF1326	0.43	-0.2
1,354,006	-		GFF1326	0.43	-1.0
1,354,006	-		GFF1326	0.43	-0.9
1,354,006	-		GFF1326	0.43	-0.3
1,354,006	-		GFF1326	0.43	+0.6
1,354,006	-		GFF1326	0.43	+0.7
1,354,006	-		GFF1326	0.43	-2.2
1,354,006	-		GFF1326	0.43	+0.3
1,354,006	-		GFF1326	0.43	+0.6
1,354,006	-		GFF1326	0.43	+1.4
1,354,006	-		GFF1326	0.43	-0.1
1,354,006	-		GFF1326	0.43	-0.5
1,354,006	-		GFF1326	0.43	-1.7
1,354,006	-		GFF1326	0.43	-1.0
1,354,006	-		GFF1326	0.43	+0.4
1,354,039	+		GFF1326	0.45	-0.3
1,354,039	+		GFF1326	0.45	-0.1
1,354,045	-		GFF1326	0.45	-1.7
1,354,047	+		GFF1326	0.45	-1.2
1,354,047	-		GFF1326	0.45	-1.8
1,354,047	-		GFF1326	0.45	+0.3
1,354,058	+		GFF1326	0.46	+0.7
1,354,066	+		GFF1326	0.46	+0.7
1,354,066	+		GFF1326	0.46	-0.3
1,354,067	-		GFF1326	0.46	-0.2
1,354,073	-		GFF1326	0.47	+0.4
1,354,073	-		GFF1326	0.47	+0.7
1,354,073	-		GFF1326	0.47	-0.4
1,354,089	-		GFF1326	0.47	-1.5
1,354,096	-		GFF1326	0.48	-0.4
1,354,104	-		GFF1326	0.48	+1.1
1,354,107	-		GFF1326	0.48	-1.3
1,354,108	+		GFF1326	0.48	+0.1
1,354,108	+		GFF1326	0.48	-0.1