Strain Fitness in Sphingobium sp. HT1-2 around GFF1312

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,341,102	+		GFF1311	0.66	+0.0
1,341,102	+		GFF1311	0.66	-0.8
1,341,102	+		GFF1311	0.66	-2.2
1,341,110	-		GFF1311	0.66	-0.9
1,341,110	-		GFF1311	0.66	+0.1
1,341,110	-		GFF1311	0.66	-0.1
1,341,114	-		GFF1311	0.66	-1.3
1,341,124	+		GFF1311	0.67	-1.4
1,341,137	-		GFF1311	0.67	-1.3
1,341,151	-		GFF1311	0.68	-1.0
1,341,157	+		GFF1311	0.68	-0.1
1,341,176	+		GFF1311	0.69	+0.4
1,341,181	+		GFF1311	0.69	+0.8
1,341,181	-		GFF1311	0.69	-1.2
1,341,186	+		GFF1311	0.69	+0.7
1,341,186	+		GFF1311	0.69	+0.9
1,341,186	+		GFF1311	0.69	+0.2
1,341,186	+		GFF1311	0.69	+0.8
1,341,191	+		GFF1311	0.70	-0.7
1,341,216	+		GFF1311	0.71	+0.2
1,341,232	+		GFF1311	0.71	+0.0
1,341,232	+		GFF1311	0.71	+1.3
1,341,254	+		GFF1311	0.72	-0.5
1,341,259	+		GFF1311	0.72	-0.6
1,341,259	+		GFF1311	0.72	+0.1
1,341,259	+		GFF1311	0.72	+0.7
1,341,262	-		GFF1311	0.72	+1.0
1,341,264	+		GFF1311	0.73	+1.3
1,341,264	+		GFF1311	0.73	+0.1
1,341,272	-		GFF1311	0.73	+0.5
1,341,272	-		GFF1311	0.73	-0.3
1,341,276	+		GFF1311	0.73	-0.4
1,341,276	+		GFF1311	0.73	-0.0
1,341,284	-		GFF1311	0.73	+1.1
1,341,284	-		GFF1311	0.73	-0.5
1,341,301	-		GFF1311	0.74	+0.5
1,341,302	-		GFF1311	0.74	-0.6
1,341,305	+		GFF1311	0.74	+0.7
1,341,305	+		GFF1311	0.74	-1.4
1,341,313	-		GFF1311	0.75	+2.0
1,341,313	-		GFF1311	0.75	+0.5
1,341,313	-		GFF1311	0.75	+0.1
1,341,313	-		GFF1311	0.75	-0.5
1,341,324	+		GFF1311	0.75	+0.1
1,341,326	+		GFF1311	0.75	-0.4
1,341,326	+		GFF1311	0.75	-0.9
1,341,331	+		GFF1311	0.75	-1.3
1,341,334	-		GFF1311	0.75	-0.6
1,341,334	-		GFF1311	0.75	-2.1
1,341,338	+		GFF1311	0.76	-0.6
1,341,343	+		GFF1311	0.76	+0.4
1,341,343	+		GFF1311	0.76	-1.4
1,341,343	+		GFF1311	0.76	-0.7
1,341,346	-		GFF1311	0.76	+0.3
1,341,348	+		GFF1311	0.76	-0.7
1,341,351	-		GFF1311	0.76	-0.4
1,341,351	-		GFF1311	0.76	-0.4
1,341,351	-		GFF1311	0.76	+1.0
1,341,356	+		GFF1311	0.76	+0.5
1,341,356	+		GFF1311	0.76	+0.3
1,341,358	-		GFF1311	0.76	-0.2
1,341,366	+		GFF1311	0.77	+0.4
1,341,366	+		GFF1311	0.77	+0.9
1,341,371	-		GFF1311	0.77	+1.1
1,341,405	-		GFF1311	0.78	-0.1
1,341,405	-		GFF1311	0.78	-0.0
1,341,405	-		GFF1311	0.78	-1.6
1,341,405	-		GFF1311	0.78	+0.5
1,341,417	+		GFF1311	0.79	-0.2
1,341,417	+		GFF1311	0.79	+0.5
1,341,417	+		GFF1311	0.79	-1.4
1,341,422	+		GFF1311	0.79	+0.6
1,341,425	-		GFF1311	0.79	+0.1
1,341,427	+		GFF1311	0.79	-0.5
1,341,427	+		GFF1311	0.79	+0.1
1,341,430	-		GFF1311	0.79	+1.1
1,341,430	-		GFF1311	0.79	-0.3
1,341,432	+		GFF1311	0.79	+0.2
1,341,435	-		GFF1311	0.79	+0.7
1,341,435	-		GFF1311	0.79	+0.5
1,341,435	-		GFF1311	0.79	-0.3
1,341,437	+		GFF1311	0.80	+1.3
1,341,445	-		GFF1311	0.80	-2.1
1,341,450	+		GFF1311	0.80	+0.9
1,341,458	-		GFF1311	0.80	+0.4
1,341,458	-		GFF1311	0.80	+0.4
1,341,463	+		GFF1311	0.81	+0.3
1,341,477	+		GFF1311	0.81	-2.0
1,341,477	+		GFF1311	0.81	-1.4
1,341,485	-		GFF1311	0.81	-0.4
1,341,487	+		GFF1311	0.82	+0.5
1,341,487	+		GFF1311	0.82	-1.9
1,341,487	+		GFF1311	0.82	+0.1
1,341,487	+		GFF1311	0.82	-1.0
1,341,487	+		GFF1311	0.82	+1.1
1,341,487	+		GFF1311	0.82	-0.4
1,341,487	+		GFF1311	0.82	+0.6
1,341,487	+		GFF1311	0.82	-0.7
1,341,487	+		GFF1311	0.82	-0.3
1,341,487	+		GFF1311	0.82	-0.5
1,341,495	-		GFF1311	0.82	-0.0
1,341,495	-		GFF1311	0.82	+0.1
1,341,495	-		GFF1311	0.82	-1.8
1,341,495	-		GFF1311	0.82	-0.7
1,341,495	-		GFF1311	0.82	+0.9
1,341,504	-		GFF1311	0.82	-1.9
1,341,506	+		GFF1311	0.82	-0.8
1,341,514	+		GFF1311	0.83	-0.1
1,341,514	-		GFF1311	0.83	-1.4
1,341,514	-		GFF1311	0.83	+1.1
1,341,514	-		GFF1311	0.83	-1.7
1,341,514	-		GFF1311	0.83	-0.1
1,341,516	-		GFF1311	0.83	+0.1
1,341,529	-		GFF1311	0.83	-1.9
1,341,560	-		GFF1311	0.85	+0.4
1,341,571	+		GFF1311	0.85	+0.4
1,341,579	-		GFF1311	0.85	-2.1
1,341,593	-		GFF1311	0.86	+0.0
1,341,613	+		GFF1311	0.87	-0.8
1,341,626	+		GFF1311	0.87	-0.2
1,341,631	+		GFF1311	0.87	-0.3
1,341,631	-		GFF1311	0.87	-0.6
1,341,636	+		GFF1311	0.88	+0.3
1,341,636	+		GFF1311	0.88	-0.2
1,341,643	-		GFF1311	0.88	+0.5
1,341,654	-		GFF1311	0.88	+1.3
1,341,678	+		GFF1311	0.89	-0.5
1,341,680	+		GFF1311	0.89	-2.4
1,341,681	-		GFF1311	0.89	+0.6
1,341,683	+		GFF1311	0.90	+0.2
1,341,683	+		GFF1311	0.90	+0.0
1,341,690	+		GFF1311	0.90	-0.3
1,341,691	-		GFF1311	0.90	-0.1
1,341,691	-		GFF1311	0.90	-0.3
1,341,692	-		GFF1311	0.90	-1.2
1,341,699	-				-0.8
1,341,718	+				-0.3
1,341,723	+				+0.8
1,341,723	+				+0.7
1,341,731	-				-1.3
1,341,752	+				+0.1
1,341,760	-				-0.1
1,341,776	+				+0.4
1,341,776	+				-2.0
1,341,794	-				-0.7
1,341,794	-				-0.2
1,341,809	+				+0.7
1,341,817	-				+1.1
1,341,817	-				-0.6
1,341,823	+				-0.3
1,341,829	+				+0.8
1,341,831	-				-1.5
1,341,831	-				-0.2
1,341,832	-				-0.2
1,341,837	-				+0.1
1,341,865	+				-0.7
1,341,865	+				+0.8
1,341,865	+				+0.4
1,341,873	-				+1.1
1,341,873	-				-0.2
1,341,873	-				+0.3
1,341,873	-				-1.9
1,341,886	+				+0.6
1,341,886	+				-0.2
1,341,886	+				-0.3
1,341,886	-				+1.0
1,341,890	+				+0.4
1,341,890	+				-2.1
1,341,890	+				+0.3
1,341,890	+				+1.0
1,341,894	-				+0.5
1,341,900	+				-0.8
1,341,900	+				-0.1
1,341,910	+				+0.1
1,341,913	-				-0.8
1,341,924	+				-0.8
1,341,940	-				-2.0
1,341,947	-				+0.3
1,341,955	-				+0.0
1,341,964	+				+0.3
1,341,971	-				-0.1
1,341,972	-				+0.1
1,342,041	-				-1.2
1,342,041	-				+0.3
1,342,075	+				-0.1
1,342,075	+				+0.7
1,342,076	-				+0.9
1,342,157	+		GFF1312	0.10	-1.7
1,342,169	-		GFF1312	0.12	+1.1
1,342,202	+		GFF1312	0.18	+0.7
1,342,207	+		GFF1312	0.19	+0.0
1,342,208	+		GFF1312	0.19	+0.8
1,342,216	+		GFF1312	0.20	-0.1
1,342,216	-		GFF1312	0.20	+1.5
1,342,229	+		GFF1312	0.22	-1.0
1,342,237	-		GFF1312	0.24	+1.9
1,342,281	+		GFF1312	0.31	+0.7
1,342,281	+		GFF1312	0.31	-2.1
1,342,286	-		GFF1312	0.32	-1.3
1,342,308	-		GFF1312	0.36	-0.4
1,342,312	+		GFF1312	0.36	-0.1
1,342,365	+		GFF1312	0.45	+1.1
1,342,373	-		GFF1312	0.47	-1.2
1,342,445	+		GFF1312	0.59	+0.6
1,342,448	-		GFF1312	0.60	-0.1
1,342,479	+		GFF1312	0.65	+1.1
1,342,479	+		GFF1312	0.65	-0.7
1,342,487	-		GFF1312	0.66	-0.6
1,342,487	-		GFF1312	0.66	+0.7
1,342,495	+		GFF1312	0.68	-0.8
1,342,536	+		GFF1312	0.74	+0.4
1,342,536	+		GFF1312	0.74	+1.5
1,342,544	-		GFF1312	0.76	-0.1
1,342,559	+		GFF1312	0.78	-1.1
1,342,559	+		GFF1312	0.78	-0.2
1,342,565	+		GFF1312	0.79	-0.5
1,342,565	+		GFF1312	0.79	-0.7
1,342,566	+		GFF1312	0.80	+1.5
1,342,567	-		GFF1312	0.80	+1.1
1,342,567	-		GFF1312	0.80	-1.4
1,342,567	-		GFF1312	0.80	-0.7
1,342,573	-		GFF1312	0.81	-1.5
1,342,595	+		GFF1312	0.85	-0.2
1,342,603	-		GFF1312	0.86	+0.1
1,342,603	-		GFF1312	0.86	-0.3
1,342,610	-		GFF1312	0.87	+1.1
1,342,615	+		GFF1312	0.88	+0.9
1,342,637	+				-1.6
1,342,637	+				+0.7
1,342,637	+				+1.0
1,342,637	+				-0.0
1,342,637	+				-0.2
1,342,637	+				+0.3
1,342,642	+				-0.3
1,342,645	-				-0.2
1,342,645	-				+0.1
1,342,645	-				+0.8
1,342,645	-				-1.5
1,342,645	-				-0.1
1,342,645	-				+0.3
1,342,645	-				-0.3
1,342,645	-				+0.4
1,342,645	-				+0.8
1,342,645	-				-0.6
1,342,645	-				+0.1
1,342,657	+				-1.0
1,342,658	+				+0.2
1,342,658	+				+0.3
1,342,658	+				+0.8
1,342,667	+				+0.6
1,342,678	+				-1.8
1,342,700	+				+0.0
1,342,728	+				+0.2
1,342,728	+				-0.7
1,342,736	-				-1.5
1,342,736	-				-0.5
1,342,738	+				-0.3
1,342,738	+				+0.0
1,342,738	+				+0.4
1,342,738	+				-1.6
1,342,738	+				+0.5
1,342,746	-				-0.2
1,342,746	-				+0.8
1,342,750	+				-0.3
1,342,750	+				-0.9
1,342,755	+				-1.4
1,342,755	+				+0.3
1,342,758	+				-1.2
1,342,758	+				-0.3
1,342,758	-				+0.3
1,342,763	+		GFF1313	0.10	-0.3
1,342,763	+		GFF1313	0.10	+0.2
1,342,763	-		GFF1313	0.10	-1.2
1,342,766	-		GFF1313	0.10	-0.1
1,342,771	-		GFF1313	0.11	+1.5
1,342,771	-		GFF1313	0.11	+0.9
1,342,790	+		GFF1313	0.13	-0.7
1,342,793	-		GFF1313	0.14	+2.3
1,342,793	-		GFF1313	0.14	-2.0
1,342,813	-		GFF1313	0.16	+0.3
1,342,813	-		GFF1313	0.16	+0.2
1,342,827	-		GFF1313	0.18	-1.6
1,342,831	+		GFF1313	0.19	-2.6
1,342,831	+		GFF1313	0.19	-1.5
1,342,840	+		GFF1313	0.20	+0.3
1,342,847	-		GFF1313	0.21	-0.9
1,342,847	-		GFF1313	0.21	+0.5
1,342,874	+		GFF1313	0.24	-0.8
1,342,896	+		GFF1313	0.27	-2.3
1,342,902	-		GFF1313	0.28	-0.7
1,342,904	-		GFF1313	0.28	-1.5
1,342,909	+		GFF1313	0.29	+0.8
1,342,909	+		GFF1313	0.29	+0.0
1,342,917	-		GFF1313	0.30	+1.3
1,342,917	-		GFF1313	0.30	+0.8
1,342,919	+		GFF1313	0.30	-0.5
1,342,953	+		GFF1313	0.35	+0.3
1,342,953	+		GFF1313	0.35	-0.2
1,342,953	+		GFF1313	0.35	-1.3
1,342,953	+		GFF1313	0.35	-0.1
1,342,953	+		GFF1313	0.35	-0.3
1,342,953	+		GFF1313	0.35	+0.2
1,342,953	+		GFF1313	0.35	+0.8
1,342,953	+		GFF1313	0.35	-0.3
1,342,953	+		GFF1313	0.35	+0.6
1,342,953	+		GFF1313	0.35	+0.1
1,342,953	+		GFF1313	0.35	-0.3
1,342,953	+		GFF1313	0.35	+1.0
1,342,953	+		GFF1313	0.35	-0.3
1,342,953	+		GFF1313	0.35	+0.9
1,342,953	+		GFF1313	0.35	+0.2
1,342,961	-		GFF1313	0.36	-0.4
1,342,961	-		GFF1313	0.36	+1.4
1,342,961	-		GFF1313	0.36	+0.7
1,342,961	-		GFF1313	0.36	-2.0
1,342,961	-		GFF1313	0.36	-2.5
1,342,961	-		GFF1313	0.36	-1.3
1,342,961	-		GFF1313	0.36	-0.8
1,342,961	-		GFF1313	0.36	+0.7
1,342,961	-		GFF1313	0.36	-2.4
1,342,961	-		GFF1313	0.36	-0.9
1,342,961	-		GFF1313	0.36	-0.4
1,342,961	-		GFF1313	0.36	-0.1
1,342,961	-		GFF1313	0.36	-0.1
1,342,961	-		GFF1313	0.36	+0.2
1,342,961	-		GFF1313	0.36	-0.3
1,342,961	-		GFF1313	0.36	+0.1
1,342,961	-		GFF1313	0.36	+0.6
1,342,961	-		GFF1313	0.36	-2.1
1,342,961	-		GFF1313	0.36	+0.4
1,342,961	-		GFF1313	0.36	+0.8
1,342,961	-		GFF1313	0.36	-0.2
1,342,963	+		GFF1313	0.36	-0.2
1,342,963	+		GFF1313	0.36	-1.4
1,342,963	+		GFF1313	0.36	-0.3
1,342,965	+		GFF1313	0.36	+0.3
1,342,971	-		GFF1313	0.37	-0.4
1,342,971	-		GFF1313	0.37	+0.0
1,342,971	-		GFF1313	0.37	-0.5
1,342,971	-		GFF1313	0.37	-1.4
1,342,973	-		GFF1313	0.37	-0.2
1,342,978	+		GFF1313	0.38	+0.2
1,342,988	-		GFF1313	0.39	-0.0
1,343,005	-		GFF1313	0.41	+0.1
1,343,019	+		GFF1313	0.43	+0.7
1,343,046	+		GFF1313	0.47	-1.0
1,343,046	+		GFF1313	0.47	-1.6
1,343,046	+		GFF1313	0.47	-0.6
1,343,047	-		GFF1313	0.47	-0.7
1,343,054	-		GFF1313	0.48	+0.3
1,343,054	-		GFF1313	0.48	+0.0
1,343,054	-		GFF1313	0.48	+1.0
1,343,056	+		GFF1313	0.48	-0.7
1,343,057	+		GFF1313	0.48	+0.0
1,343,065	-		GFF1313	0.49	+0.6
1,343,126	-		GFF1313	0.57	+0.1
1,343,140	+		GFF1313	0.59	+0.8
1,343,147	+		GFF1313	0.60	-1.6
1,343,149	-		GFF1313	0.60	-1.5
1,343,155	+		GFF1313	0.61	+0.5
1,343,157	+		GFF1313	0.61	-1.6
1,343,183	+		GFF1313	0.64	-0.8
1,343,183	+		GFF1313	0.64	+2.0
1,343,184	-		GFF1313	0.65	-0.1
1,343,186	-		GFF1313	0.65	-0.4
1,343,186	-		GFF1313	0.65	-0.5
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1,343,385	+				+0.1
1,343,394	+				+0.4
1,343,402	-				+2.0
1,343,402	-				+0.2
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