Strain Fitness in Sphingobium sp. HT1-2 around GFF128

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
122,105	+		GFF127	0.31	-1.7
122,126	+		GFF127	0.32	-0.6
122,131	+		GFF127	0.33	+0.7
122,131	+		GFF127	0.33	-2.9
122,131	+		GFF127	0.33	+0.4
122,131	+		GFF127	0.33	-1.9
122,131	+		GFF127	0.33	-0.2
122,131	+		GFF127	0.33	+0.7
122,139	-		GFF127	0.33	-0.3
122,139	-		GFF127	0.33	-0.3
122,163	-		GFF127	0.35	+0.2
122,163	-		GFF127	0.35	-0.7
122,163	-		GFF127	0.35	+0.1
122,168	-		GFF127	0.35	+0.6
122,168	-		GFF127	0.35	+1.5
122,178	-		GFF127	0.36	+1.1
122,178	-		GFF127	0.36	+0.5
122,190	-		GFF127	0.37	+0.0
122,198	-		GFF127	0.38	-1.8
122,198	-		GFF127	0.38	-1.6
122,198	-		GFF127	0.38	-0.4
122,198	-		GFF127	0.38	+0.3
122,212	-		GFF127	0.38	-0.9
122,241	-		GFF127	0.41	-1.5
122,246	+		GFF127	0.41	-0.2
122,247	+		GFF127	0.41	+0.1
122,253	+		GFF127	0.41	-1.5
122,255	+		GFF127	0.42	-0.5
122,255	+		GFF127	0.42	-1.5
122,261	-		GFF127	0.42	-1.7
122,268	-		GFF127	0.42	+1.0
122,295	-		GFF127	0.44	+0.0
122,310	+		GFF127	0.45	-1.3
122,313	-		GFF127	0.46	-0.2
122,313	-		GFF127	0.46	-0.8
122,313	-		GFF127	0.46	-0.5
122,324	-		GFF127	0.46	-0.2
122,328	-		GFF127	0.47	+0.7
122,331	+		GFF127	0.47	-0.2
122,331	+		GFF127	0.47	-0.5
122,331	+		GFF127	0.47	-0.1
122,334	-		GFF127	0.47	+0.7
122,341	+		GFF127	0.48	-1.3
122,348	+		GFF127	0.48	-0.3
122,364	-		GFF127	0.49	-1.7
122,373	-		GFF127	0.50	-0.2
122,373	-		GFF127	0.50	-0.5
122,388	-		GFF127	0.51	-0.1
122,391	+		GFF127	0.51	+0.3
122,391	+		GFF127	0.51	-1.2
122,451	-		GFF127	0.55	+1.1
122,471	+		GFF127	0.57	-2.4
122,495	+		GFF127	0.58	-0.2
122,523	+		GFF127	0.60	+0.7
122,523	+		GFF127	0.60	+0.3
122,541	-		GFF127	0.62	-0.7
122,551	-		GFF127	0.62	-0.5
122,560	+		GFF127	0.63	+0.3
122,567	+		GFF127	0.64	+0.1
122,567	+		GFF127	0.64	+1.1
122,568	-		GFF127	0.64	-0.2
122,568	-		GFF127	0.64	-0.5
122,568	-		GFF127	0.64	-0.5
122,568	-		GFF127	0.64	+0.9
122,574	+		GFF127	0.64	-1.2
122,575	-		GFF127	0.64	-0.6
122,575	-		GFF127	0.64	+1.3
122,575	-		GFF127	0.64	-1.8
122,575	-		GFF127	0.64	+0.3
122,582	-		GFF127	0.65	-2.0
122,594	+		GFF127	0.65	-1.0
122,594	-		GFF127	0.65	+1.4
122,623	+		GFF127	0.68	+0.4
122,631	-		GFF127	0.68	+0.5
122,631	-		GFF127	0.68	+0.8
122,631	-		GFF127	0.68	+0.1
122,641	+		GFF127	0.69	+0.0
122,641	+		GFF127	0.69	-2.3
122,641	+		GFF127	0.69	+0.6
122,646	+		GFF127	0.69	-0.1
122,646	+		GFF127	0.69	+0.0
122,649	-		GFF127	0.69	-1.0
122,649	-		GFF127	0.69	+0.2
122,649	-		GFF127	0.69	+0.3
122,651	+		GFF127	0.69	-0.3
122,652	-		GFF127	0.70	-1.5
122,654	-		GFF127	0.70	-1.1
122,654	-		GFF127	0.70	-1.1
122,659	-		GFF127	0.70	-1.5
122,660	+		GFF127	0.70	-0.5
122,668	-		GFF127	0.71	-0.4
122,668	-		GFF127	0.71	-0.2
122,668	-		GFF127	0.71	+0.4
122,668	-		GFF127	0.71	+0.3
122,668	-		GFF127	0.71	+1.6
122,668	-		GFF127	0.71	-1.9
122,676	-		GFF127	0.71	+0.1
122,676	-		GFF127	0.71	+0.1
122,710	+		GFF127	0.74	-0.4
122,723	+		GFF127	0.75	+0.0
122,723	+		GFF127	0.75	+0.8
122,723	+		GFF127	0.75	-0.2
122,723	+		GFF127	0.75	+0.6
122,730	+		GFF127	0.75	+0.5
122,731	-		GFF127	0.75	-0.1
122,738	-		GFF127	0.76	-0.4
122,806	+		GFF127	0.80	+0.3
122,811	+		GFF127	0.81	+1.0
122,819	-		GFF127	0.81	+0.4
122,819	-		GFF127	0.81	+0.6
122,819	-		GFF127	0.81	-1.3
122,819	-		GFF127	0.81	+0.3
122,821	-		GFF127	0.81	-0.1
122,826	+		GFF127	0.82	+0.3
122,826	+		GFF127	0.82	+1.4
122,826	+		GFF127	0.82	+1.0
122,826	+		GFF127	0.82	-1.5
122,826	+		GFF127	0.82	-1.7
122,829	-		GFF127	0.82	+0.4
122,829	-		GFF127	0.82	-0.3
122,830	+		GFF127	0.82	-0.5
122,831	+		GFF127	0.82	-1.2
122,831	+		GFF127	0.82	-1.7
122,834	-		GFF127	0.82	+0.3
122,834	-		GFF127	0.82	-0.7
122,834	-		GFF127	0.82	-0.3
122,834	-		GFF127	0.82	-1.4
122,834	-		GFF127	0.82	+0.0
122,836	+		GFF127	0.83	+0.3
122,836	+		GFF127	0.83	+0.1
122,836	+		GFF127	0.83	-0.3
122,836	+		GFF127	0.83	+0.3
122,836	+		GFF127	0.83	+0.1
122,836	+		GFF127	0.83	+0.4
122,836	+		GFF127	0.83	+0.3
122,839	-		GFF127	0.83	+0.8
122,839	-		GFF127	0.83	-2.5
122,839	-		GFF127	0.83	-0.5
122,839	-		GFF127	0.83	-0.2
122,839	-		GFF127	0.83	+0.7
122,844	-		GFF127	0.83	-0.6
122,844	-		GFF127	0.83	+0.1
122,844	-		GFF127	0.83	+0.3
122,844	-		GFF127	0.83	-1.1
122,844	-		GFF127	0.83	+0.3
122,844	-		GFF127	0.83	-0.7
122,844	-		GFF127	0.83	+0.5
122,844	-		GFF127	0.83	-0.4
122,844	-		GFF127	0.83	-0.8
122,844	-		GFF127	0.83	-0.7
122,844	-		GFF127	0.83	-0.9
122,851	-		GFF127	0.84	-1.2
122,863	+		GFF127	0.84	-0.6
122,863	+		GFF127	0.84	+0.8
122,869	+		GFF127	0.85	-0.6
122,871	-		GFF127	0.85	-0.8
122,887	-		GFF127	0.86	-0.2
122,896	-		GFF127	0.87	-1.2
122,915	-		GFF127	0.88	-1.4
122,922	+		GFF127	0.89	+0.1
122,922	+		GFF127	0.89	+0.2
122,922	+		GFF127	0.89	-0.6
122,922	+		GFF127	0.89	-1.0
122,922	+		GFF127	0.89	-0.7
122,922	+		GFF127	0.89	-0.9
122,922	+		GFF127	0.89	+1.4
122,922	+		GFF127	0.89	-1.6
122,922	+		GFF127	0.89	-0.3
122,922	+		GFF127	0.89	+0.8
122,922	+		GFF127	0.89	-1.4
122,922	+		GFF127	0.89	-1.9
122,922	+		GFF127	0.89	+0.4
122,922	+		GFF127	0.89	+0.8
122,922	+		GFF127	0.89	+1.6
122,922	+		GFF127	0.89	-1.1
122,922	+		GFF127	0.89	-0.9
122,922	+		GFF127	0.89	-0.6
122,930	-		GFF127	0.89	+1.1
122,930	-		GFF127	0.89	+0.8
122,930	-		GFF127	0.89	+0.5
122,930	-		GFF127	0.89	-0.0
122,930	-		GFF127	0.89	+0.0
122,930	-		GFF127	0.89	+0.1
122,930	-		GFF127	0.89	-0.3
122,930	-		GFF127	0.89	+0.3
122,930	-		GFF127	0.89	-2.2
122,930	-		GFF127	0.89	-0.1
122,930	-		GFF127	0.89	+0.3
122,930	-		GFF127	0.89	+0.3
122,930	-		GFF127	0.89	-1.2
122,930	-		GFF127	0.89	+0.0
122,930	-		GFF127	0.89	-0.7
122,930	-		GFF127	0.89	-0.8
122,930	-		GFF127	0.89	-0.5
122,930	-		GFF127	0.89	-0.9
122,930	-		GFF127	0.89	+0.4
122,930	-		GFF127	0.89	-1.1
122,930	-		GFF127	0.89	-0.7
122,930	-		GFF127	0.89	-0.2
122,973	-				-0.8
122,975	+				+0.6
122,982	+				-0.6
122,982	+				-0.1
122,982	+				-1.3
122,982	+				+0.3
122,982	+				+0.5
122,982	+				-0.3
122,982	+				-1.2
122,982	+				-1.3
122,982	+				-0.5
122,983	-				-0.1
122,983	-				-1.0
122,987	+				-0.7
122,987	+				-1.4
122,990	-				+0.1
122,990	-				-1.0
122,990	-				-1.1
122,990	-				-1.1
122,990	-				-0.3
123,011	-				-1.2
123,014	+				-1.9
123,033	-				+0.0
123,033	-				+1.3
123,041	+				+0.4
123,046	+				-0.7
123,049	-				-0.4
123,049	-				+0.3
123,054	-				+0.6
123,054	-				-0.3
123,054	-				-0.5
123,079	+				+0.3
123,079	+				-0.2
123,079	+				-1.1
123,079	+				+0.4
123,079	+				-0.1
123,087	-				+0.8
123,087	-				-0.4
123,087	-				+0.9
123,093	-				-0.1
123,156	+		GFF128	0.60	-1.2
123,156	+		GFF128	0.60	-1.0
123,156	+		GFF128	0.60	-1.5
123,157	+		GFF128	0.61	-1.0
123,157	+		GFF128	0.61	-0.1
123,164	-		GFF128	0.67	+0.3
123,164	-		GFF128	0.67	-1.9
123,167	+		GFF128	0.69	-0.8
123,167	+		GFF128	0.69	+0.6
123,167	+		GFF128	0.69	-0.6
123,167	+		GFF128	0.69	-0.8
123,167	+		GFF128	0.69	-1.6
123,167	+		GFF128	0.69	-0.6
123,170	-		GFF128	0.72	-1.4
123,175	-		GFF128	0.76	-0.3
123,175	-		GFF128	0.76	-0.9
123,188	+		GFF128	0.88	-0.7
123,188	+		GFF128	0.88	-0.7
123,188	+		GFF128	0.88	-0.3
123,188	+		GFF128	0.88	+0.3
123,188	+		GFF128	0.88	-0.3
123,196	-				+1.2
123,196	-				-2.6
123,196	-				+1.4
123,196	-				-0.6
123,211	-				-1.2
123,233	-				-0.2
123,239	+				-1.3
123,239	+				-2.4
123,248	-				+1.5
123,249	+				-1.3
123,249	+				-1.3
123,249	+				-0.1
123,249	+				-1.6
123,249	+				-0.2
123,249	+				+0.9
123,249	+				-2.0
123,249	+				+0.4
123,257	-				+1.1
123,257	-				-1.2
123,286	+				-1.0
123,294	-				-0.1
123,312	+				-1.6
123,319	+				-0.7
123,341	+				+0.1
123,344	-				+0.1
123,350	-				+0.8
123,350	-				+1.0
123,357	-				-0.7
123,358	+				-0.6
123,363	+				-0.3
123,368	+				+0.6
123,368	+				-0.0
123,376	+				-0.2
123,376	+				-0.2
123,376	-				+0.2
123,381	+		GFF129	0.10	+0.1
123,384	-		GFF129	0.11	+0.6
123,437	-		GFF129	0.14	+0.4
123,443	+		GFF129	0.14	+0.5
123,445	+		GFF129	0.14	+0.3
123,448	+		GFF129	0.15	-1.7
123,451	-		GFF129	0.15	+1.6
123,458	+		GFF129	0.15	-1.7
123,501	+		GFF129	0.18	+0.3
123,501	+		GFF129	0.18	+0.1
123,501	+		GFF129	0.18	+0.8
123,501	+		GFF129	0.18	-2.0
123,509	-		GFF129	0.19	-0.2
123,513	+		GFF129	0.19	+0.3
123,521	-		GFF129	0.19	-1.4
123,534	-		GFF129	0.20	-0.4
123,544	+		GFF129	0.21	-1.6
123,558	+		GFF129	0.22	-0.3
123,559	+		GFF129	0.22	-0.4
123,559	+		GFF129	0.22	+0.1
123,579	+		GFF129	0.23	+0.3
123,580	-		GFF129	0.23	-0.7
123,587	-		GFF129	0.24	+0.6
123,594	+		GFF129	0.24	-1.4
123,603	+		GFF129	0.25	-1.6
123,607	-		GFF129	0.25	-0.5
123,607	-		GFF129	0.25	-0.2
123,609	+		GFF129	0.25	+0.6
123,611	-		GFF129	0.25	-1.5
123,624	+		GFF129	0.26	+0.2
123,643	-		GFF129	0.27	+1.2
123,654	-		GFF129	0.28	+0.3
123,662	+		GFF129	0.29	-1.2
123,664	-		GFF129	0.29	+0.4
123,700	+		GFF129	0.31	-1.7
123,705	+		GFF129	0.31	-1.2
123,705	+		GFF129	0.31	-0.5
123,724	-		GFF129	0.33	-0.2
123,744	+		GFF129	0.34	+0.8
123,770	+		GFF129	0.36	+1.3
123,783	+		GFF129	0.37	-1.0
123,783	+		GFF129	0.37	-1.3
123,809	+		GFF129	0.38	-0.9
123,809	+		GFF129	0.38	+0.2
123,809	+		GFF129	0.38	+0.2
123,817	-		GFF129	0.39	-0.3
123,817	-		GFF129	0.39	+1.3
123,817	-		GFF129	0.39	+0.7
123,817	-		GFF129	0.39	-0.9
123,817	-		GFF129	0.39	-1.6
123,819	+		GFF129	0.39	-0.0
123,819	+		GFF129	0.39	-0.2
123,819	+		GFF129	0.39	-0.5
123,819	+		GFF129	0.39	-0.5
123,820	+		GFF129	0.39	-1.4
123,827	-		GFF129	0.39	-0.2
123,827	-		GFF129	0.39	-0.5
123,827	-		GFF129	0.39	-1.6
123,827	-		GFF129	0.39	-0.5
123,856	+		GFF129	0.41	+0.1
123,856	+		GFF129	0.41	+0.6
123,856	+		GFF129	0.41	-0.7
123,856	+		GFF129	0.41	+1.1
123,864	-		GFF129	0.42	-1.1
123,885	+		GFF129	0.43	+0.3
123,887	+		GFF129	0.43	+0.6
123,887	+		GFF129	0.43	-0.3
123,920	+		GFF129	0.45	-2.1
123,996	+		GFF129	0.50	+0.2
123,996	+		GFF129	0.50	+0.9
124,001	+		GFF129	0.51	+0.9
124,008	+		GFF129	0.51	+0.3
124,009	-		GFF129	0.51	-0.6
124,009	-		GFF129	0.51	-0.7
124,010	+		GFF129	0.51	-2.2
124,017	-		GFF129	0.52	-0.5
124,029	-		GFF129	0.53	-0.9
124,039	-		GFF129	0.53	-0.3
124,044	+		GFF129	0.54	-1.1
124,052	-		GFF129	0.54	-1.1
124,052	-		GFF129	0.54	+1.0
124,055	+		GFF129	0.54	-1.0
124,065	+		GFF129	0.55	-0.1
124,065	+		GFF129	0.55	-1.7
124,065	+		GFF129	0.55	-0.1
124,073	-		GFF129	0.55	+0.1
124,076	+		GFF129	0.56	+0.1
124,096	+		GFF129	0.57	-0.2
124,147	+		GFF129	0.60	-0.4
124,157	+		GFF129	0.61	-0.2
124,167	+		GFF129	0.62	+0.7
124,175	-		GFF129	0.62	-1.3
124,175	-		GFF129	0.62	-1.3
124,181	-		GFF129	0.62	-0.5
124,181	-		GFF129	0.62	+0.0