Strain Fitness in Sphingobium sp. HT1-2 around GFF1263

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,290,893	+				-1.8
1,290,893	+				-0.6
1,290,895	-				-0.1
1,290,898	+				+0.8
1,290,901	-				+0.6
1,290,901	-				-0.4
1,290,901	-				-0.2
1,290,906	-				-1.7
1,290,929	+				+0.4
1,290,954	-				-0.6
1,290,955	-				+0.4
1,290,984	+				-0.8
1,290,984	+				-0.3
1,290,994	+				-0.3
1,291,019	+		GFF1262	0.10	-0.1
1,291,019	+		GFF1262	0.10	+0.4
1,291,019	+		GFF1262	0.10	-0.9
1,291,019	+		GFF1262	0.10	+0.3
1,291,027	-		GFF1262	0.11	+0.9
1,291,032	-		GFF1262	0.12	-2.2
1,291,032	-		GFF1262	0.12	+0.4
1,291,046	-		GFF1262	0.13	-0.4
1,291,061	+		GFF1262	0.15	-1.5
1,291,064	-		GFF1262	0.15	+0.4
1,291,064	-		GFF1262	0.15	-0.2
1,291,064	-		GFF1262	0.15	-0.4
1,291,087	+		GFF1262	0.17	-1.1
1,291,094	+		GFF1262	0.18	-1.5
1,291,095	-		GFF1262	0.18	-1.3
1,291,102	-		GFF1262	0.19	-1.5
1,291,102	-		GFF1262	0.19	+0.6
1,291,115	+		GFF1262	0.20	-2.6
1,291,139	+		GFF1262	0.23	+1.2
1,291,144	+		GFF1262	0.23	-2.0
1,291,152	-		GFF1262	0.24	+0.0
1,291,171	+		GFF1262	0.26	-0.3
1,291,189	+		GFF1262	0.28	-1.5
1,291,194	+		GFF1262	0.28	+0.5
1,291,197	-		GFF1262	0.29	-0.5
1,291,202	-		GFF1262	0.29	+0.7
1,291,208	+		GFF1262	0.30	+0.2
1,291,226	-		GFF1262	0.32	-0.2
1,291,232	+		GFF1262	0.32	-0.2
1,291,271	-		GFF1262	0.36	-0.2
1,291,273	+		GFF1262	0.37	-0.6
1,291,306	-		GFF1262	0.40	-0.4
1,291,306	-		GFF1262	0.40	-0.8
1,291,308	+		GFF1262	0.40	+0.3
1,291,308	+		GFF1262	0.40	-0.9
1,291,312	-		GFF1262	0.41	-0.2
1,291,317	-		GFF1262	0.41	+0.8
1,291,317	-		GFF1262	0.41	-0.5
1,291,327	-		GFF1262	0.42	+0.0
1,291,424	+		GFF1262	0.52	-0.5
1,291,424	+		GFF1262	0.52	-2.7
1,291,446	+		GFF1262	0.55	-1.2
1,291,463	+		GFF1262	0.56	+1.4
1,291,471	+		GFF1262	0.57	-0.5
1,291,471	+		GFF1262	0.57	-0.6
1,291,471	+		GFF1262	0.57	+0.1
1,291,479	-		GFF1262	0.58	+0.5
1,291,479	-		GFF1262	0.58	+0.4
1,291,498	-		GFF1262	0.60	-0.1
1,291,538	-		GFF1262	0.64	-1.2
1,291,538	-		GFF1262	0.64	-0.6
1,291,538	-		GFF1262	0.64	-0.8
1,291,548	+		GFF1262	0.65	+2.1
1,291,548	+		GFF1262	0.65	+0.0
1,291,552	+		GFF1262	0.66	+0.0
1,291,556	-		GFF1262	0.66	-1.0
1,291,560	-		GFF1262	0.66	+0.4
1,291,560	-		GFF1262	0.66	-0.0
1,291,565	-		GFF1262	0.67	+0.2
1,291,574	+		GFF1262	0.68	+0.1
1,291,576	+		GFF1262	0.68	+0.3
1,291,576	+		GFF1262	0.68	-1.9
1,291,590	-		GFF1262	0.69	+1.0
1,291,590	-		GFF1262	0.69	+0.5
1,291,595	-		GFF1262	0.70	-0.6
1,291,605	-		GFF1262	0.71	-2.1
1,291,605	-		GFF1262	0.71	+0.6
1,291,654	+		GFF1262	0.76	-0.6
1,291,654	+		GFF1262	0.76	-0.6
1,291,662	-		GFF1262	0.77	+0.4
1,291,672	+		GFF1262	0.78	-1.0
1,291,678	+		GFF1262	0.79	+0.5
1,291,720	-		GFF1262	0.83	-0.2
1,291,724	-		GFF1262	0.83	+0.4
1,291,738	-		GFF1262	0.85	+0.3
1,291,742	+		GFF1262	0.85	-0.7
1,291,747	+		GFF1262	0.86	-0.3
1,291,747	+		GFF1262	0.86	-0.1
1,291,747	+		GFF1262	0.86	-0.9
1,291,747	+		GFF1262	0.86	-1.1
1,291,747	+		GFF1262	0.86	-0.7
1,291,747	+		GFF1262	0.86	-0.5
1,291,747	+		GFF1262	0.86	+0.7
1,291,747	+		GFF1262	0.86	-0.3
1,291,747	+		GFF1262	0.86	+0.9
1,291,750	-		GFF1262	0.86	+0.8
1,291,755	-		GFF1262	0.87	-0.3
1,291,755	-		GFF1262	0.87	+0.4
1,291,755	-		GFF1262	0.87	-1.7
1,291,755	-		GFF1262	0.87	+0.0
1,291,755	-		GFF1262	0.87	-0.4
1,291,755	-		GFF1262	0.87	-0.3
1,291,757	+		GFF1262	0.87	+1.1
1,291,766	+		GFF1262	0.88	+1.0
1,291,766	+		GFF1262	0.88	-1.3
1,291,766	+		GFF1262	0.88	-1.0
1,291,766	+		GFF1262	0.88	+0.6
1,291,774	-		GFF1262	0.89	-1.4
1,291,776	+		GFF1262	0.89	-1.5
1,291,776	+		GFF1262	0.89	-1.7
1,291,776	+		GFF1262	0.89	-2.2
1,291,791	+				-0.5
1,291,801	+				+1.4
1,291,809	-				-1.0
1,291,819	-				-2.1
1,291,842	+				+1.0
1,291,850	-				+0.5
1,291,852	+				-0.1
1,291,860	-				-2.6
1,291,861	+				-0.4
1,291,886	-				+0.8
1,291,886	-				+0.4
1,291,938	+				-1.2
1,291,974	+				+0.2
1,291,974	+				-1.7
1,291,974	+				+0.3
1,291,975	+				-0.1
1,291,982	-				+0.0
1,291,982	-				-0.1
1,291,982	-				-2.1
1,292,012	+		GFF1263	0.12	-1.4
1,292,017	+		GFF1263	0.12	+1.1
1,292,048	+		GFF1263	0.15	-3.3
1,292,074	-		GFF1263	0.17	-0.4
1,292,094	+		GFF1263	0.19	+0.1
1,292,102	-		GFF1263	0.20	-0.4
1,292,102	-		GFF1263	0.20	-0.6
1,292,105	+		GFF1263	0.20	-1.9
1,292,125	-		GFF1263	0.22	-1.2
1,292,146	+		GFF1263	0.24	-2.6
1,292,159	-		GFF1263	0.25	+0.4
1,292,169	+		GFF1263	0.26	+0.9
1,292,197	+		GFF1263	0.28	-2.6
1,292,197	+		GFF1263	0.28	+0.5
1,292,197	+		GFF1263	0.28	+0.8
1,292,197	+		GFF1263	0.28	-1.0
1,292,197	+		GFF1263	0.28	-0.0
1,292,197	+		GFF1263	0.28	-0.9
1,292,197	+		GFF1263	0.28	-0.9
1,292,197	+		GFF1263	0.28	-0.7
1,292,197	+		GFF1263	0.28	-1.3
1,292,197	+		GFF1263	0.28	-0.1
1,292,197	+		GFF1263	0.28	+1.4
1,292,197	+		GFF1263	0.28	+1.1
1,292,197	+		GFF1263	0.28	+0.6
1,292,197	+		GFF1263	0.28	+0.1
1,292,197	+		GFF1263	0.28	+0.3
1,292,202	+		GFF1263	0.29	-1.1
1,292,205	-		GFF1263	0.29	-0.5
1,292,205	-		GFF1263	0.29	+0.2
1,292,205	-		GFF1263	0.29	-0.9
1,292,205	-		GFF1263	0.29	-2.5
1,292,205	-		GFF1263	0.29	-0.4
1,292,205	-		GFF1263	0.29	-1.7
1,292,205	-		GFF1263	0.29	-1.2
1,292,205	-		GFF1263	0.29	-0.7
1,292,205	-		GFF1263	0.29	-0.6
1,292,205	-		GFF1263	0.29	+0.1
1,292,205	-		GFF1263	0.29	-0.6
1,292,205	-		GFF1263	0.29	+0.6
1,292,207	+		GFF1263	0.29	-0.1
1,292,207	+		GFF1263	0.29	-1.3
1,292,207	+		GFF1263	0.29	-2.1
1,292,210	-		GFF1263	0.29	-1.2
1,292,210	-		GFF1263	0.29	-1.0
1,292,210	-		GFF1263	0.29	-0.8
1,292,210	-		GFF1263	0.29	-1.5
1,292,215	-		GFF1263	0.30	-1.9
1,292,239	+		GFF1263	0.32	-2.0
1,292,271	-		GFF1263	0.35	-0.6
1,292,317	+		GFF1263	0.39	-0.8
1,292,333	+		GFF1263	0.40	+0.8
1,292,341	-		GFF1263	0.41	+0.1
1,292,346	-		GFF1263	0.41	-0.1
1,292,353	-		GFF1263	0.42	-0.9
1,292,382	+		GFF1263	0.45	+1.1
1,292,401	+		GFF1263	0.46	+1.3
1,292,407	-		GFF1263	0.47	+0.4
1,292,427	+		GFF1263	0.49	-0.5
1,292,442	+		GFF1263	0.50	-0.4
1,292,460	-		GFF1263	0.52	-0.6
1,292,473	+		GFF1263	0.53	+0.1
1,292,473	+		GFF1263	0.53	+0.2
1,292,478	+		GFF1263	0.53	-0.8
1,292,478	+		GFF1263	0.53	-0.5
1,292,478	+		GFF1263	0.53	-0.4
1,292,478	+		GFF1263	0.53	-1.6
1,292,481	-		GFF1263	0.53	-0.7
1,292,483	+		GFF1263	0.54	-1.6
1,292,486	-		GFF1263	0.54	-0.5
1,292,505	+		GFF1263	0.56	-0.3
1,292,513	-		GFF1263	0.56	+0.4
1,292,546	+		GFF1263	0.59	-0.9
1,292,570	+		GFF1263	0.61	-1.4
1,292,571	-		GFF1263	0.61	-0.9
1,292,575	+		GFF1263	0.62	-0.7
1,292,580	+		GFF1263	0.62	-1.0
1,292,597	-		GFF1263	0.64	-1.2
1,292,609	-		GFF1263	0.65	-0.3
1,292,612	+		GFF1263	0.65	+0.6
1,292,621	-		GFF1263	0.66	-1.7
1,292,630	+		GFF1263	0.67	-0.0
1,292,638	-		GFF1263	0.67	+0.6
1,292,675	-		GFF1263	0.71	-2.1
1,292,677	+		GFF1263	0.71	-0.1
1,292,677	+		GFF1263	0.71	-1.6
1,292,677	+		GFF1263	0.71	-0.1
1,292,677	+		GFF1263	0.71	+0.8
1,292,682	+		GFF1263	0.71	+0.1
1,292,682	+		GFF1263	0.71	-0.7
1,292,685	-		GFF1263	0.72	+0.7
1,292,685	-		GFF1263	0.72	+0.4
1,292,685	-		GFF1263	0.72	-1.0
1,292,704	+		GFF1263	0.73	+0.2
1,292,705	+		GFF1263	0.73	-1.5
1,292,705	+		GFF1263	0.73	-0.4
1,292,713	-		GFF1263	0.74	-1.1
1,292,740	+		GFF1263	0.77	+0.1
1,292,767	+		GFF1263	0.79	-0.2
1,292,774	-		GFF1263	0.80	+2.0
1,292,801	-		GFF1263	0.82	+0.4
1,292,801	-		GFF1263	0.82	-2.2
1,292,820	+		GFF1263	0.84	-2.2
1,292,823	-		GFF1263	0.84	-0.3
1,292,825	+		GFF1263	0.84	-3.0
1,292,825	+		GFF1263	0.84	-1.3
1,292,827	+		GFF1263	0.84	+0.7
1,292,827	+		GFF1263	0.84	+1.7
1,292,827	+		GFF1263	0.84	-0.0
1,292,828	-		GFF1263	0.84	+0.5
1,292,830	-		GFF1263	0.85	-2.3
1,292,833	-		GFF1263	0.85	+1.2
1,292,835	-		GFF1263	0.85	+0.3
1,292,835	-		GFF1263	0.85	-0.1
1,292,835	-		GFF1263	0.85	-0.1
1,292,835	-		GFF1263	0.85	+1.4
1,292,835	-		GFF1263	0.85	+0.9
1,292,835	-		GFF1263	0.85	+0.9
1,292,835	-		GFF1263	0.85	-1.4
1,292,848	+		GFF1263	0.86	-0.2
1,292,856	-		GFF1263	0.87	-0.9
1,292,871	+		GFF1263	0.88	+1.5
1,292,871	+		GFF1263	0.88	-0.7
1,292,879	-		GFF1263	0.89	-0.8
1,292,879	-		GFF1263	0.89	-0.5
1,292,905	+				-0.3
1,292,905	+				+0.4
1,292,905	+				-0.3
1,292,910	+				+0.4
1,292,913	-				+0.3
1,292,913	-				+0.1
1,292,920	+				-0.5
1,292,920	+				+0.4
1,292,920	+				-0.1
1,292,923	-				-0.7
1,292,928	-				+0.2
1,292,939	+				+1.8
1,292,963	-				+0.4
1,293,020	+				-0.5
1,293,028	-				-0.0
1,293,028	-				+0.2
1,293,042	+				+0.1
1,293,047	+				+0.3
1,293,047	+				+0.0
1,293,050	-				-0.4
1,293,052	+				+0.1
1,293,055	+				-1.2
1,293,055	-				+0.8
1,293,055	-				+1.2
1,293,057	+				-1.0
1,293,065	-				-0.6
1,293,065	-				+0.1
1,293,080	+				+0.3
1,293,080	+				+1.1
1,293,087	-				-1.6
1,293,157	-		GFF1264	0.15	+0.9
1,293,171	+		GFF1264	0.16	-0.3
1,293,182	+		GFF1264	0.17	-1.0
1,293,192	+		GFF1264	0.18	-0.2
1,293,200	-		GFF1264	0.19	+1.1
1,293,209	+		GFF1264	0.19	+1.6
1,293,226	-		GFF1264	0.21	-0.1
1,293,228	+		GFF1264	0.21	+0.7
1,293,234	-		GFF1264	0.22	+0.8
1,293,241	+		GFF1264	0.22	-1.6
1,293,241	+		GFF1264	0.22	+0.8
1,293,241	+		GFF1264	0.22	-0.8
1,293,244	-		GFF1264	0.23	+0.1
1,293,249	-		GFF1264	0.23	+1.3
1,293,249	-		GFF1264	0.23	+0.3
1,293,254	-		GFF1264	0.23	-0.6
1,293,261	+		GFF1264	0.24	+0.9
1,293,266	+		GFF1264	0.25	+0.0
1,293,282	+		GFF1264	0.26	+0.8
1,293,289	-		GFF1264	0.27	-0.5
1,293,292	+		GFF1264	0.27	-0.1
1,293,301	+		GFF1264	0.28	-0.7
1,293,309	-		GFF1264	0.29	+0.4
1,293,309	-		GFF1264	0.29	-0.4
1,293,321	+		GFF1264	0.30	-1.3
1,293,321	+		GFF1264	0.30	-1.8
1,293,329	-		GFF1264	0.30	-0.3
1,293,329	-		GFF1264	0.30	-0.0
1,293,329	-		GFF1264	0.30	+0.7
1,293,331	+		GFF1264	0.31	-1.3
1,293,331	+		GFF1264	0.31	-0.8
1,293,331	+		GFF1264	0.31	-0.2
1,293,339	-		GFF1264	0.31	-1.5
1,293,341	-		GFF1264	0.31	-0.5
1,293,359	+		GFF1264	0.33	+0.3
1,293,359	+		GFF1264	0.33	-0.6
1,293,359	+		GFF1264	0.33	-0.4
1,293,367	-		GFF1264	0.34	-2.1
1,293,367	-		GFF1264	0.34	-1.1
1,293,367	-		GFF1264	0.34	+1.1
1,293,374	-		GFF1264	0.35	-0.9
1,293,374	-		GFF1264	0.35	+1.0
1,293,377	-		GFF1264	0.35	-0.9
1,293,408	-		GFF1264	0.38	-0.8
1,293,414	+		GFF1264	0.38	+1.3
1,293,414	+		GFF1264	0.38	+0.4
1,293,414	+		GFF1264	0.38	-0.2
1,293,422	-		GFF1264	0.39	-0.4
1,293,422	-		GFF1264	0.39	-1.4
1,293,422	-		GFF1264	0.39	-0.1
1,293,422	-		GFF1264	0.39	+0.2
1,293,422	-		GFF1264	0.39	-0.9
1,293,436	+		GFF1264	0.40	-0.2
1,293,444	-		GFF1264	0.41	-1.3
1,293,444	-		GFF1264	0.41	-0.1
1,293,455	+		GFF1264	0.42	-0.9
1,293,463	-		GFF1264	0.43	-0.4
1,293,478	-		GFF1264	0.44	+0.0
1,293,496	+		GFF1264	0.46	-0.8
1,293,504	-		GFF1264	0.47	+0.0
1,293,520	+		GFF1264	0.48	-0.1
1,293,520	+		GFF1264	0.48	-0.7
1,293,533	-		GFF1264	0.49	-1.0
1,293,557	-		GFF1264	0.51	-0.2
1,293,565	+		GFF1264	0.52	-0.7
1,293,565	+		GFF1264	0.52	+0.4
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