Strain Fitness in Sphingobium sp. HT1-2 around GFF1262

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,289,959	+				+0.7
1,289,966	+				+1.1
1,289,974	-				-2.1
1,289,975	-				-1.7
1,290,016	+				-0.4
1,290,019	-				+0.3
1,290,022	-				-1.7
1,290,022	-				-0.4
1,290,024	-				+0.7
1,290,024	-				+0.0
1,290,032	+				+0.1
1,290,051	+				+0.7
1,290,059	-				-0.7
1,290,062	+				-1.3
1,290,064	-				-1.7
1,290,065	-				-0.1
1,290,075	-		GFF1261	0.10	-0.9
1,290,075	-		GFF1261	0.10	-0.2
1,290,097	+		GFF1261	0.13	+0.9
1,290,105	+		GFF1261	0.13	-0.4
1,290,120	-		GFF1261	0.15	-0.5
1,290,160	-		GFF1261	0.19	+0.8
1,290,165	-		GFF1261	0.20	+1.3
1,290,165	-		GFF1261	0.20	-2.1
1,290,170	-		GFF1261	0.20	-0.7
1,290,172	+		GFF1261	0.21	-0.0
1,290,172	+		GFF1261	0.21	+0.5
1,290,209	+		GFF1261	0.25	-0.3
1,290,209	-		GFF1261	0.25	+0.2
1,290,213	-		GFF1261	0.25	+1.4
1,290,226	-		GFF1261	0.26	-2.9
1,290,257	-		GFF1261	0.30	-0.3
1,290,259	+		GFF1261	0.30	+0.8
1,290,262	-		GFF1261	0.30	-0.4
1,290,274	+		GFF1261	0.31	+1.8
1,290,277	+		GFF1261	0.32	-0.7
1,290,282	-		GFF1261	0.32	+0.5
1,290,312	+		GFF1261	0.35	+0.1
1,290,327	+		GFF1261	0.37	+0.4
1,290,330	-		GFF1261	0.37	+0.9
1,290,366	+		GFF1261	0.41	-0.3
1,290,372	+		GFF1261	0.42	+0.2
1,290,375	-		GFF1261	0.42	-0.8
1,290,379	-		GFF1261	0.43	-1.7
1,290,403	-		GFF1261	0.45	-0.4
1,290,404	-		GFF1261	0.45	+0.6
1,290,418	+		GFF1261	0.47	-0.2
1,290,418	+		GFF1261	0.47	-1.4
1,290,418	+		GFF1261	0.47	-0.7
1,290,421	-		GFF1261	0.47	-1.0
1,290,426	-		GFF1261	0.48	-0.2
1,290,426	-		GFF1261	0.48	-0.3
1,290,431	-		GFF1261	0.48	+0.4
1,290,433	+		GFF1261	0.48	-0.2
1,290,433	+		GFF1261	0.48	-0.7
1,290,437	+		GFF1261	0.49	-1.0
1,290,444	+		GFF1261	0.49	-0.1
1,290,444	+		GFF1261	0.49	+1.0
1,290,450	-		GFF1261	0.50	-0.4
1,290,452	-		GFF1261	0.50	-0.7
1,290,453	+		GFF1261	0.50	-1.3
1,290,463	+		GFF1261	0.51	+0.3
1,290,468	+		GFF1261	0.52	-0.8
1,290,473	+		GFF1261	0.53	+0.4
1,290,473	+		GFF1261	0.53	-1.2
1,290,477	+		GFF1261	0.53	+0.7
1,290,481	-		GFF1261	0.53	-2.7
1,290,482	+		GFF1261	0.54	-1.2
1,290,482	+		GFF1261	0.54	-1.7
1,290,493	-		GFF1261	0.55	-0.5
1,290,495	-		GFF1261	0.55	-2.0
1,290,495	-		GFF1261	0.55	-1.0
1,290,495	-		GFF1261	0.55	-0.5
1,290,495	-		GFF1261	0.55	-2.3
1,290,495	-		GFF1261	0.55	+0.0
1,290,510	-		GFF1261	0.56	-2.3
1,290,517	-		GFF1261	0.57	-0.8
1,290,556	+		GFF1261	0.61	+0.4
1,290,564	-		GFF1261	0.62	+0.3
1,290,567	+		GFF1261	0.63	+0.5
1,290,586	-		GFF1261	0.65	-0.1
1,290,602	-		GFF1261	0.66	+0.7
1,290,604	+		GFF1261	0.66	-0.3
1,290,615	+		GFF1261	0.68	+1.3
1,290,615	+		GFF1261	0.68	+0.1
1,290,615	+		GFF1261	0.68	-3.1
1,290,615	+		GFF1261	0.68	+1.1
1,290,615	+		GFF1261	0.68	+2.1
1,290,615	+		GFF1261	0.68	+0.7
1,290,615	+		GFF1261	0.68	-0.1
1,290,615	+		GFF1261	0.68	-1.7
1,290,615	+		GFF1261	0.68	-0.1
1,290,623	-		GFF1261	0.68	+1.0
1,290,623	-		GFF1261	0.68	-0.2
1,290,623	-		GFF1261	0.68	-0.6
1,290,623	-		GFF1261	0.68	-0.7
1,290,623	-		GFF1261	0.68	+0.3
1,290,623	-		GFF1261	0.68	-0.9
1,290,633	+		GFF1261	0.70	-1.2
1,290,641	-		GFF1261	0.70	-0.6
1,290,651	+		GFF1261	0.71	-0.7
1,290,654	-		GFF1261	0.72	-1.4
1,290,666	+		GFF1261	0.73	-0.8
1,290,666	+		GFF1261	0.73	-0.3
1,290,666	+		GFF1261	0.73	-0.3
1,290,666	+		GFF1261	0.73	-2.3
1,290,666	+		GFF1261	0.73	-1.1
1,290,666	+		GFF1261	0.73	-0.5
1,290,671	+		GFF1261	0.74	-0.6
1,290,673	-		GFF1261	0.74	+0.1
1,290,674	-		GFF1261	0.74	+0.0
1,290,674	-		GFF1261	0.74	-1.3
1,290,674	-		GFF1261	0.74	+1.1
1,290,707	+		GFF1261	0.77	+0.6
1,290,710	+		GFF1261	0.78	-2.1
1,290,710	+		GFF1261	0.78	+0.1
1,290,718	-		GFF1261	0.79	-1.4
1,290,720	+		GFF1261	0.79	+0.7
1,290,723	+		GFF1261	0.79	-1.7
1,290,728	-		GFF1261	0.80	-0.7
1,290,786	+		GFF1261	0.86	-1.1
1,290,796	-		GFF1261	0.87	+1.5
1,290,806	-		GFF1261	0.88	-0.0
1,290,815	+		GFF1261	0.89	+0.8
1,290,825	+				-0.3
1,290,854	+				+1.9
1,290,854	-				-2.2
1,290,856	+				-2.1
1,290,864	+				+0.3
1,290,864	+				+0.6
1,290,864	+				-0.1
1,290,893	+				-1.8
1,290,893	+				-0.6
1,290,895	-				-0.1
1,290,898	+				+0.8
1,290,901	-				+0.6
1,290,901	-				-0.4
1,290,901	-				-0.2
1,290,906	-				-1.7
1,290,929	+				+0.4
1,290,954	-				-0.6
1,290,955	-				+0.4
1,290,984	+				-0.8
1,290,984	+				-0.3
1,290,994	+				-0.3
1,291,019	+		GFF1262	0.10	-0.1
1,291,019	+		GFF1262	0.10	+0.4
1,291,019	+		GFF1262	0.10	-0.9
1,291,019	+		GFF1262	0.10	+0.3
1,291,027	-		GFF1262	0.11	+0.9
1,291,032	-		GFF1262	0.12	-2.2
1,291,032	-		GFF1262	0.12	+0.4
1,291,046	-		GFF1262	0.13	-0.4
1,291,061	+		GFF1262	0.15	-1.5
1,291,064	-		GFF1262	0.15	+0.4
1,291,064	-		GFF1262	0.15	-0.2
1,291,064	-		GFF1262	0.15	-0.4
1,291,087	+		GFF1262	0.17	-1.1
1,291,094	+		GFF1262	0.18	-1.5
1,291,095	-		GFF1262	0.18	-1.3
1,291,102	-		GFF1262	0.19	-1.5
1,291,102	-		GFF1262	0.19	+0.6
1,291,115	+		GFF1262	0.20	-2.6
1,291,139	+		GFF1262	0.23	+1.2
1,291,144	+		GFF1262	0.23	-2.0
1,291,152	-		GFF1262	0.24	+0.0
1,291,171	+		GFF1262	0.26	-0.3
1,291,189	+		GFF1262	0.28	-1.5
1,291,194	+		GFF1262	0.28	+0.5
1,291,197	-		GFF1262	0.29	-0.5
1,291,202	-		GFF1262	0.29	+0.7
1,291,208	+		GFF1262	0.30	+0.2
1,291,226	-		GFF1262	0.32	-0.2
1,291,232	+		GFF1262	0.32	-0.2
1,291,271	-		GFF1262	0.36	-0.2
1,291,273	+		GFF1262	0.37	-0.6
1,291,306	-		GFF1262	0.40	-0.4
1,291,306	-		GFF1262	0.40	-0.8
1,291,308	+		GFF1262	0.40	+0.3
1,291,308	+		GFF1262	0.40	-0.9
1,291,312	-		GFF1262	0.41	-0.2
1,291,317	-		GFF1262	0.41	+0.8
1,291,317	-		GFF1262	0.41	-0.5
1,291,327	-		GFF1262	0.42	+0.0
1,291,424	+		GFF1262	0.52	-0.5
1,291,424	+		GFF1262	0.52	-2.7
1,291,446	+		GFF1262	0.55	-1.2
1,291,463	+		GFF1262	0.56	+1.4
1,291,471	+		GFF1262	0.57	-0.5
1,291,471	+		GFF1262	0.57	-0.6
1,291,471	+		GFF1262	0.57	+0.1
1,291,479	-		GFF1262	0.58	+0.5
1,291,479	-		GFF1262	0.58	+0.4
1,291,498	-		GFF1262	0.60	-0.1
1,291,538	-		GFF1262	0.64	-1.2
1,291,538	-		GFF1262	0.64	-0.6
1,291,538	-		GFF1262	0.64	-0.8
1,291,548	+		GFF1262	0.65	+2.1
1,291,548	+		GFF1262	0.65	+0.0
1,291,552	+		GFF1262	0.66	+0.0
1,291,556	-		GFF1262	0.66	-1.0
1,291,560	-		GFF1262	0.66	+0.4
1,291,560	-		GFF1262	0.66	-0.0
1,291,565	-		GFF1262	0.67	+0.2
1,291,574	+		GFF1262	0.68	+0.1
1,291,576	+		GFF1262	0.68	+0.3
1,291,576	+		GFF1262	0.68	-1.9
1,291,590	-		GFF1262	0.69	+1.0
1,291,590	-		GFF1262	0.69	+0.5
1,291,595	-		GFF1262	0.70	-0.6
1,291,605	-		GFF1262	0.71	-2.1
1,291,605	-		GFF1262	0.71	+0.6
1,291,654	+		GFF1262	0.76	-0.6
1,291,654	+		GFF1262	0.76	-0.6
1,291,662	-		GFF1262	0.77	+0.4
1,291,672	+		GFF1262	0.78	-1.0
1,291,678	+		GFF1262	0.79	+0.5
1,291,720	-		GFF1262	0.83	-0.2
1,291,724	-		GFF1262	0.83	+0.4
1,291,738	-		GFF1262	0.85	+0.3
1,291,742	+		GFF1262	0.85	-0.7
1,291,747	+		GFF1262	0.86	-0.3
1,291,747	+		GFF1262	0.86	-0.1
1,291,747	+		GFF1262	0.86	-0.9
1,291,747	+		GFF1262	0.86	-1.1
1,291,747	+		GFF1262	0.86	-0.7
1,291,747	+		GFF1262	0.86	-0.5
1,291,747	+		GFF1262	0.86	+0.7
1,291,747	+		GFF1262	0.86	-0.3
1,291,747	+		GFF1262	0.86	+0.9
1,291,750	-		GFF1262	0.86	+0.8
1,291,755	-		GFF1262	0.87	-0.3
1,291,755	-		GFF1262	0.87	+0.4
1,291,755	-		GFF1262	0.87	-1.7
1,291,755	-		GFF1262	0.87	+0.0
1,291,755	-		GFF1262	0.87	-0.4
1,291,755	-		GFF1262	0.87	-0.3
1,291,757	+		GFF1262	0.87	+1.1
1,291,766	+		GFF1262	0.88	+1.0
1,291,766	+		GFF1262	0.88	-1.3
1,291,766	+		GFF1262	0.88	-1.0
1,291,766	+		GFF1262	0.88	+0.6
1,291,774	-		GFF1262	0.89	-1.4
1,291,776	+		GFF1262	0.89	-1.5
1,291,776	+		GFF1262	0.89	-1.7
1,291,776	+		GFF1262	0.89	-2.2
1,291,791	+				-0.5
1,291,801	+				+1.4
1,291,809	-				-1.0
1,291,819	-				-2.1
1,291,842	+				+1.0
1,291,850	-				+0.5
1,291,852	+				-0.1
1,291,860	-				-2.6
1,291,861	+				-0.4
1,291,886	-				+0.8
1,291,886	-				+0.4
1,291,938	+				-1.2
1,291,974	+				+0.2
1,291,974	+				-1.7
1,291,974	+				+0.3
1,291,975	+				-0.1
1,291,982	-				+0.0
1,291,982	-				-0.1
1,291,982	-				-2.1
1,292,012	+		GFF1263	0.12	-1.4
1,292,017	+		GFF1263	0.12	+1.1
1,292,048	+		GFF1263	0.15	-3.3
1,292,074	-		GFF1263	0.17	-0.4
1,292,094	+		GFF1263	0.19	+0.1
1,292,102	-		GFF1263	0.20	-0.4
1,292,102	-		GFF1263	0.20	-0.6
1,292,105	+		GFF1263	0.20	-1.9
1,292,125	-		GFF1263	0.22	-1.2
1,292,146	+		GFF1263	0.24	-2.6
1,292,159	-		GFF1263	0.25	+0.4
1,292,169	+		GFF1263	0.26	+0.9
1,292,197	+		GFF1263	0.28	-2.6
1,292,197	+		GFF1263	0.28	+0.5
1,292,197	+		GFF1263	0.28	+0.8
1,292,197	+		GFF1263	0.28	-1.0
1,292,197	+		GFF1263	0.28	-0.0
1,292,197	+		GFF1263	0.28	-0.9
1,292,197	+		GFF1263	0.28	-0.9
1,292,197	+		GFF1263	0.28	-0.7
1,292,197	+		GFF1263	0.28	-1.3
1,292,197	+		GFF1263	0.28	-0.1
1,292,197	+		GFF1263	0.28	+1.4
1,292,197	+		GFF1263	0.28	+1.1
1,292,197	+		GFF1263	0.28	+0.6
1,292,197	+		GFF1263	0.28	+0.1
1,292,197	+		GFF1263	0.28	+0.3
1,292,202	+		GFF1263	0.29	-1.1
1,292,205	-		GFF1263	0.29	-0.5
1,292,205	-		GFF1263	0.29	+0.2
1,292,205	-		GFF1263	0.29	-0.9
1,292,205	-		GFF1263	0.29	-2.5
1,292,205	-		GFF1263	0.29	-0.4
1,292,205	-		GFF1263	0.29	-1.7
1,292,205	-		GFF1263	0.29	-1.2
1,292,205	-		GFF1263	0.29	-0.7
1,292,205	-		GFF1263	0.29	-0.6
1,292,205	-		GFF1263	0.29	+0.1
1,292,205	-		GFF1263	0.29	-0.6
1,292,205	-		GFF1263	0.29	+0.6
1,292,207	+		GFF1263	0.29	-0.1
1,292,207	+		GFF1263	0.29	-1.3
1,292,207	+		GFF1263	0.29	-2.1
1,292,210	-		GFF1263	0.29	-1.2
1,292,210	-		GFF1263	0.29	-1.0
1,292,210	-		GFF1263	0.29	-0.8
1,292,210	-		GFF1263	0.29	-1.5
1,292,215	-		GFF1263	0.30	-1.9
1,292,239	+		GFF1263	0.32	-2.0
1,292,271	-		GFF1263	0.35	-0.6
1,292,317	+		GFF1263	0.39	-0.8
1,292,333	+		GFF1263	0.40	+0.8
1,292,341	-		GFF1263	0.41	+0.1
1,292,346	-		GFF1263	0.41	-0.1
1,292,353	-		GFF1263	0.42	-0.9
1,292,382	+		GFF1263	0.45	+1.1
1,292,401	+		GFF1263	0.46	+1.3
1,292,407	-		GFF1263	0.47	+0.4
1,292,427	+		GFF1263	0.49	-0.5
1,292,442	+		GFF1263	0.50	-0.4
1,292,460	-		GFF1263	0.52	-0.6
1,292,473	+		GFF1263	0.53	+0.1
1,292,473	+		GFF1263	0.53	+0.2
1,292,478	+		GFF1263	0.53	-0.8
1,292,478	+		GFF1263	0.53	-0.5
1,292,478	+		GFF1263	0.53	-0.4
1,292,478	+		GFF1263	0.53	-1.6
1,292,481	-		GFF1263	0.53	-0.7
1,292,483	+		GFF1263	0.54	-1.6
1,292,486	-		GFF1263	0.54	-0.5
1,292,505	+		GFF1263	0.56	-0.3
1,292,513	-		GFF1263	0.56	+0.4
1,292,546	+		GFF1263	0.59	-0.9
1,292,570	+		GFF1263	0.61	-1.4
1,292,571	-		GFF1263	0.61	-0.9
1,292,575	+		GFF1263	0.62	-0.7
1,292,580	+		GFF1263	0.62	-1.0
1,292,597	-		GFF1263	0.64	-1.2
1,292,609	-		GFF1263	0.65	-0.3
1,292,612	+		GFF1263	0.65	+0.6
1,292,621	-		GFF1263	0.66	-1.7
1,292,630	+		GFF1263	0.67	-0.0
1,292,638	-		GFF1263	0.67	+0.6
1,292,675	-		GFF1263	0.71	-2.1
1,292,677	+		GFF1263	0.71	-0.1
1,292,677	+		GFF1263	0.71	-1.6
1,292,677	+		GFF1263	0.71	-0.1
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