Strain Fitness in Sphingobium sp. HT1-2 around GFF1260

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,288,067	+		GFF1259	0.28	-0.8
1,288,075	+		GFF1259	0.29	+0.3
1,288,132	+		GFF1259	0.33	-0.7
1,288,132	+		GFF1259	0.33	-0.1
1,288,132	+		GFF1259	0.33	-0.2
1,288,132	+		GFF1259	0.33	-0.9
1,288,132	+		GFF1259	0.33	-1.0
1,288,132	+		GFF1259	0.33	-0.2
1,288,132	+		GFF1259	0.33	-0.2
1,288,138	-		GFF1259	0.33	-1.6
1,288,139	+		GFF1259	0.33	-1.2
1,288,140	-		GFF1259	0.33	-0.8
1,288,140	-		GFF1259	0.33	-1.2
1,288,140	-		GFF1259	0.33	-1.8
1,288,140	-		GFF1259	0.33	-2.0
1,288,140	-		GFF1259	0.33	-0.1
1,288,140	-		GFF1259	0.33	-0.6
1,288,144	+		GFF1259	0.34	+0.5
1,288,144	+		GFF1259	0.34	+0.1
1,288,146	+		GFF1259	0.34	-0.9
1,288,146	+		GFF1259	0.34	-0.0
1,288,151	+		GFF1259	0.34	+0.3
1,288,151	+		GFF1259	0.34	+0.0
1,288,151	+		GFF1259	0.34	+0.6
1,288,152	+		GFF1259	0.34	-2.2
1,288,152	+		GFF1259	0.34	-0.2
1,288,152	+		GFF1259	0.34	+0.3
1,288,152	+		GFF1259	0.34	+0.7
1,288,154	-		GFF1259	0.34	-0.1
1,288,156	+		GFF1259	0.35	-0.1
1,288,159	-		GFF1259	0.35	-0.9
1,288,159	-		GFF1259	0.35	-0.4
1,288,165	-		GFF1259	0.35	-0.3
1,288,170	-		GFF1259	0.36	+0.5
1,288,173	+		GFF1259	0.36	-1.8
1,288,184	-		GFF1259	0.37	-1.2
1,288,189	+		GFF1259	0.37	+1.0
1,288,189	+		GFF1259	0.37	-0.4
1,288,190	+		GFF1259	0.37	+0.2
1,288,190	+		GFF1259	0.37	-0.9
1,288,190	+		GFF1259	0.37	-0.6
1,288,190	+		GFF1259	0.37	-2.0
1,288,197	-		GFF1259	0.38	-0.6
1,288,197	-		GFF1259	0.38	+0.6
1,288,197	-		GFF1259	0.38	+0.7
1,288,198	-		GFF1259	0.38	-1.3
1,288,198	-		GFF1259	0.38	-1.1
1,288,198	-		GFF1259	0.38	+0.0
1,288,198	-		GFF1259	0.38	-0.7
1,288,198	-		GFF1259	0.38	-2.4
1,288,198	-		GFF1259	0.38	-0.4
1,288,198	-		GFF1259	0.38	+1.3
1,288,198	-		GFF1259	0.38	-0.3
1,288,235	+		GFF1259	0.40	-1.7
1,288,235	+		GFF1259	0.40	+0.1
1,288,240	+		GFF1259	0.41	+0.3
1,288,240	+		GFF1259	0.41	-1.3
1,288,243	-		GFF1259	0.41	-0.0
1,288,289	+		GFF1259	0.44	-0.1
1,288,289	+		GFF1259	0.44	-0.1
1,288,289	+		GFF1259	0.44	+0.0
1,288,294	+		GFF1259	0.45	-0.7
1,288,295	+		GFF1259	0.45	-1.1
1,288,295	+		GFF1259	0.45	-0.6
1,288,297	-		GFF1259	0.45	-1.3
1,288,297	-		GFF1259	0.45	-0.4
1,288,297	-		GFF1259	0.45	+0.5
1,288,297	-		GFF1259	0.45	-0.0
1,288,303	-		GFF1259	0.45	+0.7
1,288,303	-		GFF1259	0.45	-0.1
1,288,316	+		GFF1259	0.46	+0.3
1,288,324	-		GFF1259	0.47	-0.3
1,288,327	+		GFF1259	0.47	-0.1
1,288,355	-		GFF1259	0.49	+0.4
1,288,357	+		GFF1259	0.49	-0.2
1,288,357	+		GFF1259	0.49	+0.3
1,288,378	-		GFF1259	0.51	+1.1
1,288,378	-		GFF1259	0.51	-0.4
1,288,384	-		GFF1259	0.51	+0.7
1,288,389	+		GFF1259	0.51	+0.1
1,288,393	-		GFF1259	0.52	+0.4
1,288,396	+		GFF1259	0.52	-2.2
1,288,396	+		GFF1259	0.52	-0.7
1,288,404	-		GFF1259	0.53	-1.3
1,288,404	-		GFF1259	0.53	-0.8
1,288,404	-		GFF1259	0.53	-0.7
1,288,420	-		GFF1259	0.54	-1.4
1,288,420	-		GFF1259	0.54	-2.0
1,288,422	+		GFF1259	0.54	-1.7
1,288,425	-		GFF1259	0.54	+0.3
1,288,435	+		GFF1259	0.55	-0.8
1,288,435	+		GFF1259	0.55	-0.5
1,288,447	+		GFF1259	0.56	+1.4
1,288,449	+		GFF1259	0.56	-0.7
1,288,449	+		GFF1259	0.56	+0.0
1,288,449	+		GFF1259	0.56	-1.3
1,288,449	+		GFF1259	0.56	-1.6
1,288,449	+		GFF1259	0.56	+0.5
1,288,449	+		GFF1259	0.56	+0.6
1,288,449	+		GFF1259	0.56	+0.8
1,288,455	-		GFF1259	0.56	-0.9
1,288,457	-		GFF1259	0.56	-1.4
1,288,459	+		GFF1259	0.57	+0.4
1,288,482	-		GFF1259	0.58	+0.3
1,288,482	-		GFF1259	0.58	-0.6
1,288,513	+		GFF1259	0.60	+0.4
1,288,513	+		GFF1259	0.60	-0.7
1,288,513	+		GFF1259	0.60	-0.7
1,288,520	+		GFF1259	0.61	+0.3
1,288,521	-		GFF1259	0.61	+0.6
1,288,521	-		GFF1259	0.61	-0.8
1,288,531	-		GFF1259	0.62	-0.3
1,288,536	-		GFF1259	0.62	-0.0
1,288,561	+		GFF1259	0.64	-1.9
1,288,569	-		GFF1259	0.64	-0.7
1,288,587	-		GFF1259	0.66	+0.5
1,288,623	+		GFF1259	0.68	+0.4
1,288,625	+		GFF1259	0.69	-0.2
1,288,626	-		GFF1259	0.69	+1.3
1,288,630	+		GFF1259	0.69	+0.7
1,288,630	+		GFF1259	0.69	-1.0
1,288,631	+		GFF1259	0.69	+0.1
1,288,639	+		GFF1259	0.70	-0.6
1,288,692	+		GFF1259	0.73	-0.8
1,288,728	+		GFF1259	0.76	+0.4
1,288,747	-		GFF1259	0.77	+0.7
1,288,775	-		GFF1259	0.79	-1.7
1,288,775	-		GFF1259	0.79	-1.3
1,288,776	+		GFF1259	0.79	-1.3
1,288,782	+		GFF1259	0.80	+0.0
1,288,794	-		GFF1259	0.81	+0.5
1,288,795	+		GFF1259	0.81	+0.3
1,288,798	+		GFF1259	0.81	-0.3
1,288,803	+		GFF1259	0.81	+0.4
1,288,847	+		GFF1259	0.85	-0.4
1,288,852	+		GFF1259	0.85	+1.5
1,288,855	-		GFF1259	0.85	-1.2
1,288,855	-		GFF1259	0.85	-0.5
1,288,870	+		GFF1259	0.86	+0.6
1,288,883	+		GFF1259	0.87	+0.3
1,288,935	+				-0.5
1,288,945	+				-1.0
1,288,945	+				-2.1
1,288,953	-				+0.6
1,288,954	-				+1.3
1,288,979	+				-1.0
1,288,982	-				+0.2
1,288,987	-				-0.5
1,288,987	-				-2.0
1,288,987	-				+2.1
1,288,987	-				+0.0
1,288,989	+				-0.6
1,288,989	+				-0.0
1,289,036	+				-0.2
1,289,038	+				-0.6
1,289,043	+				-1.3
1,289,046	-				-1.0
1,289,056	-				+0.0
1,289,061	+				-1.1
1,289,069	+				-0.1
1,289,110	+				-1.3
1,289,110	+				+1.1
1,289,110	+				-0.1
1,289,110	+				-1.8
1,289,110	+				-1.6
1,289,110	+				+0.3
1,289,110	+				-1.1
1,289,110	+				-1.1
1,289,118	-				+0.8
1,289,118	-				+1.6
1,289,118	-				+0.5
1,289,118	-				-1.5
1,289,118	-				-2.4
1,289,118	-				+0.6
1,289,173	+		GFF1260	0.13	-0.2
1,289,173	+		GFF1260	0.13	+0.2
1,289,173	+		GFF1260	0.13	+0.5
1,289,173	+		GFF1260	0.13	-0.7
1,289,174	+		GFF1260	0.13	-1.3
1,289,201	+		GFF1260	0.16	-0.5
1,289,223	+		GFF1260	0.18	+0.0
1,289,223	+		GFF1260	0.18	-1.3
1,289,226	-		GFF1260	0.19	+0.6
1,289,227	+		GFF1260	0.19	-0.9
1,289,233	+		GFF1260	0.19	-0.7
1,289,247	+		GFF1260	0.21	+0.5
1,289,255	-		GFF1260	0.22	-1.6
1,289,255	-		GFF1260	0.22	+1.7
1,289,274	-		GFF1260	0.24	-1.2
1,289,274	-		GFF1260	0.24	-0.7
1,289,276	+		GFF1260	0.24	+0.3
1,289,277	+		GFF1260	0.24	-1.7
1,289,291	+		GFF1260	0.26	-0.7
1,289,296	+		GFF1260	0.26	-2.1
1,289,301	+		GFF1260	0.27	-1.1
1,289,309	-		GFF1260	0.28	-0.1
1,289,317	+		GFF1260	0.28	+0.7
1,289,323	+		GFF1260	0.29	-0.6
1,289,329	-		GFF1260	0.30	-0.4
1,289,341	+		GFF1260	0.31	+0.6
1,289,364	+		GFF1260	0.34	-1.3
1,289,364	+		GFF1260	0.34	-0.6
1,289,367	-		GFF1260	0.34	-0.4
1,289,368	+		GFF1260	0.34	-0.3
1,289,372	-		GFF1260	0.34	-0.1
1,289,376	-		GFF1260	0.35	-2.6
1,289,384	+		GFF1260	0.36	-0.7
1,289,422	+		GFF1260	0.40	-1.8
1,289,422	-		GFF1260	0.40	-2.0
1,289,427	+		GFF1260	0.40	+0.0
1,289,427	+		GFF1260	0.40	-1.5
1,289,432	+		GFF1260	0.41	-1.4
1,289,435	-		GFF1260	0.41	-0.5
1,289,435	-		GFF1260	0.41	-0.8
1,289,436	+		GFF1260	0.41	-0.1
1,289,454	-		GFF1260	0.43	-0.6
1,289,463	+		GFF1260	0.44	+1.8
1,289,463	+		GFF1260	0.44	+0.1
1,289,466	-		GFF1260	0.45	-0.2
1,289,480	+		GFF1260	0.46	+0.8
1,289,480	+		GFF1260	0.46	-0.1
1,289,480	+		GFF1260	0.46	-0.8
1,289,488	-		GFF1260	0.47	+0.7
1,289,488	-		GFF1260	0.47	-0.3
1,289,488	-		GFF1260	0.47	-1.7
1,289,493	-		GFF1260	0.47	-1.0
1,289,504	+		GFF1260	0.49	-0.6
1,289,504	+		GFF1260	0.49	-0.3
1,289,504	+		GFF1260	0.49	-0.6
1,289,504	+		GFF1260	0.49	-1.4
1,289,512	-		GFF1260	0.49	+1.3
1,289,512	-		GFF1260	0.49	-1.4
1,289,512	-		GFF1260	0.49	+0.5
1,289,512	-		GFF1260	0.49	-1.4
1,289,512	-		GFF1260	0.49	-0.7
1,289,523	+		GFF1260	0.51	-1.6
1,289,528	-		GFF1260	0.51	-0.4
1,289,530	-		GFF1260	0.51	+0.0
1,289,530	-		GFF1260	0.51	+1.0
1,289,531	-		GFF1260	0.52	+0.7
1,289,533	+		GFF1260	0.52	+1.3
1,289,541	+		GFF1260	0.53	-0.6
1,289,541	+		GFF1260	0.53	+1.3
1,289,541	+		GFF1260	0.53	-1.2
1,289,541	+		GFF1260	0.53	-1.6
1,289,541	-		GFF1260	0.53	+1.4
1,289,584	+		GFF1260	0.57	+0.2
1,289,609	-		GFF1260	0.60	-0.7
1,289,609	-		GFF1260	0.60	+0.6
1,289,622	-		GFF1260	0.61	-1.0
1,289,637	+		GFF1260	0.63	+0.1
1,289,652	+		GFF1260	0.65	-1.4
1,289,679	+		GFF1260	0.67	+0.4
1,289,704	-		GFF1260	0.70	-0.1
1,289,731	-		GFF1260	0.73	-0.2
1,289,780	-		GFF1260	0.78	+0.5
1,289,781	-		GFF1260	0.78	-2.2
1,289,797	+		GFF1260	0.80	-1.8
1,289,817	-		GFF1260	0.82	+0.6
1,289,861	+		GFF1260	0.87	+0.5
1,289,873	-		GFF1260	0.88	-0.3
1,289,873	-		GFF1260	0.88	+0.3
1,289,873	-		GFF1260	0.88	+0.5
1,289,873	-		GFF1260	0.88	-1.8
1,289,873	-		GFF1260	0.88	-0.6
1,289,901	-				-1.1
1,289,906	+				-0.9
1,289,911	-				+1.8
1,289,911	-				+0.6
1,289,914	-				-0.2
1,289,959	+				+0.7
1,289,966	+				+1.1
1,289,974	-				-2.1
1,289,975	-				-1.7
1,290,016	+				-0.4
1,290,019	-				+0.3
1,290,022	-				-1.7
1,290,022	-				-0.4
1,290,024	-				+0.7
1,290,024	-				+0.0
1,290,032	+				+0.1
1,290,051	+				+0.7
1,290,059	-				-0.7
1,290,062	+				-1.3
1,290,064	-				-1.7
1,290,065	-				-0.1
1,290,075	-		GFF1261	0.10	-0.9
1,290,075	-		GFF1261	0.10	-0.2
1,290,097	+		GFF1261	0.13	+0.9
1,290,105	+		GFF1261	0.13	-0.4
1,290,120	-		GFF1261	0.15	-0.5
1,290,160	-		GFF1261	0.19	+0.8
1,290,165	-		GFF1261	0.20	+1.3
1,290,165	-		GFF1261	0.20	-2.1
1,290,170	-		GFF1261	0.20	-0.7
1,290,172	+		GFF1261	0.21	-0.0
1,290,172	+		GFF1261	0.21	+0.5
1,290,209	+		GFF1261	0.25	-0.3
1,290,209	-		GFF1261	0.25	+0.2
1,290,213	-		GFF1261	0.25	+1.4
1,290,226	-		GFF1261	0.26	-2.9
1,290,257	-		GFF1261	0.30	-0.3
1,290,259	+		GFF1261	0.30	+0.8
1,290,262	-		GFF1261	0.30	-0.4
1,290,274	+		GFF1261	0.31	+1.8
1,290,277	+		GFF1261	0.32	-0.7
1,290,282	-		GFF1261	0.32	+0.5
1,290,312	+		GFF1261	0.35	+0.1
1,290,327	+		GFF1261	0.37	+0.4
1,290,330	-		GFF1261	0.37	+0.9
1,290,366	+		GFF1261	0.41	-0.3
1,290,372	+		GFF1261	0.42	+0.2
1,290,375	-		GFF1261	0.42	-0.8
1,290,379	-		GFF1261	0.43	-1.7
1,290,403	-		GFF1261	0.45	-0.4
1,290,404	-		GFF1261	0.45	+0.6
1,290,418	+		GFF1261	0.47	-0.2
1,290,418	+		GFF1261	0.47	-1.4
1,290,418	+		GFF1261	0.47	-0.7
1,290,421	-		GFF1261	0.47	-1.0
1,290,426	-		GFF1261	0.48	-0.2
1,290,426	-		GFF1261	0.48	-0.3
1,290,431	-		GFF1261	0.48	+0.4
1,290,433	+		GFF1261	0.48	-0.2
1,290,433	+		GFF1261	0.48	-0.7
1,290,437	+		GFF1261	0.49	-1.0
1,290,444	+		GFF1261	0.49	-0.1
1,290,444	+		GFF1261	0.49	+1.0
1,290,450	-		GFF1261	0.50	-0.4
1,290,452	-		GFF1261	0.50	-0.7
1,290,453	+		GFF1261	0.50	-1.3
1,290,463	+		GFF1261	0.51	+0.3
1,290,468	+		GFF1261	0.52	-0.8
1,290,473	+		GFF1261	0.53	+0.4
1,290,473	+		GFF1261	0.53	-1.2
1,290,477	+		GFF1261	0.53	+0.7
1,290,481	-		GFF1261	0.53	-2.7
1,290,482	+		GFF1261	0.54	-1.2
1,290,482	+		GFF1261	0.54	-1.7
1,290,493	-		GFF1261	0.55	-0.5
1,290,495	-		GFF1261	0.55	-2.0
1,290,495	-		GFF1261	0.55	-1.0
1,290,495	-		GFF1261	0.55	-0.5
1,290,495	-		GFF1261	0.55	-2.3
1,290,495	-		GFF1261	0.55	+0.0
1,290,510	-		GFF1261	0.56	-2.3
1,290,517	-		GFF1261	0.57	-0.8
1,290,556	+		GFF1261	0.61	+0.4
1,290,564	-		GFF1261	0.62	+0.3
1,290,567	+		GFF1261	0.63	+0.5
1,290,586	-		GFF1261	0.65	-0.1
1,290,602	-		GFF1261	0.66	+0.7
1,290,604	+		GFF1261	0.66	-0.3
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