Strain Fitness in Sphingobium sp. HT1-2 around GFF1249

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,276,886	+		GFF1247	0.83	-2.8
1,276,886	+		GFF1247	0.83	-0.3
1,276,886	+		GFF1247	0.83	-2.3
1,276,891	+		GFF1247	0.83	+0.5
1,276,894	-		GFF1247	0.83	-0.2
1,276,899	-		GFF1247	0.83	+0.5
1,276,943	+		GFF1247	0.85	+0.2
1,276,952	+		GFF1247	0.86	-1.3
1,276,970	+		GFF1247	0.86	-1.3
1,276,970	+		GFF1247	0.86	-1.0
1,276,970	+		GFF1247	0.86	-1.2
1,276,972	-		GFF1247	0.87	-1.3
1,276,977	-		GFF1247	0.87	-0.8
1,276,996	+		GFF1247	0.88	-1.6
1,276,997	+		GFF1247	0.88	+0.5
1,277,003	+		GFF1247	0.88	-1.7
1,277,005	+		GFF1247	0.88	+1.1
1,277,005	+		GFF1247	0.88	-1.1
1,277,005	-		GFF1247	0.88	-2.3
1,277,011	-		GFF1247	0.88	+0.5
1,277,011	-		GFF1247	0.88	+0.4
1,277,041	+		GFF1247	0.90	+0.2
1,277,043	+		GFF1247	0.90	-0.8
1,277,043	+		GFF1247	0.90	-0.8
1,277,048	+				-1.1
1,277,048	+				-1.0
1,277,048	+				-0.3
1,277,048	+				+0.5
1,277,048	+				-1.6
1,277,049	-				-0.3
1,277,056	-				+0.4
1,277,056	-				+0.3
1,277,056	-				-0.3
1,277,056	-				-0.0
1,277,056	-				-0.2
1,277,056	-				-0.3
1,277,058	+				-0.3
1,277,061	+				+0.7
1,277,075	+				-0.0
1,277,112	+				-0.6
1,277,112	+				-2.5
1,277,120	-				+0.6
1,277,130	+				+1.1
1,277,134	+				-0.4
1,277,148	+				+0.2
1,277,148	+				+0.5
1,277,148	+				-1.2
1,277,160	+				-0.3
1,277,168	-				+0.8
1,277,169	+				+0.7
1,277,169	+				-1.3
1,277,188	+				+0.1
1,277,188	+				-0.7
1,277,188	+				-0.4
1,277,188	+				+0.4
1,277,196	-				-0.1
1,277,196	-				+1.0
1,277,196	-				-0.8
1,277,229	+				-0.5
1,277,256	+				-0.3
1,277,264	-				-0.7
1,277,280	+				+0.7
1,277,313	+				-0.8
1,277,317	-				+0.5
1,277,321	-				-0.6
1,277,321	-				+0.1
1,277,321	-				+1.2
1,277,369	+				-0.9
1,277,377	-				-0.2
1,277,379	+				+1.0
1,277,397	+		GFF1248	0.17	-0.5
1,277,397	+		GFF1248	0.17	+0.9
1,277,405	-		GFF1248	0.20	-0.0
1,277,405	-		GFF1248	0.20	+0.7
1,277,405	-		GFF1248	0.20	-2.1
1,277,405	-		GFF1248	0.20	+0.4
1,277,405	-		GFF1248	0.20	-0.6
1,277,405	-		GFF1248	0.20	+0.9
1,277,426	+		GFF1248	0.29	-0.4
1,277,426	+		GFF1248	0.29	-1.1
1,277,426	+		GFF1248	0.29	-0.2
1,277,426	+		GFF1248	0.29	-1.4
1,277,431	+		GFF1248	0.32	-0.1
1,277,439	-		GFF1248	0.35	-0.7
1,277,452	-		GFF1248	0.41	-0.1
1,277,479	-		GFF1248	0.52	-0.9
1,277,482	+		GFF1248	0.54	-1.5
1,277,525	-		GFF1248	0.72	+0.0
1,277,535	+		GFF1248	0.77	-1.2
1,277,535	-		GFF1248	0.77	-0.5
1,277,535	-		GFF1248	0.77	+0.3
1,277,543	-		GFF1248	0.80	+1.4
1,277,543	-		GFF1248	0.80	+0.4
1,277,549	-		GFF1248	0.83	-2.1
1,277,554	-		GFF1248	0.85	-0.7
1,277,554	-		GFF1248	0.85	+0.9
1,277,558	+		GFF1248	0.87	+0.4
1,277,558	+		GFF1248	0.87	-0.1
1,277,558	+		GFF1248	0.87	-0.4
1,277,566	-				-0.7
1,277,577	+				-0.3
1,277,577	+				+0.2
1,277,577	-				-0.7
1,277,607	+				+0.7
1,277,628	-				-1.5
1,277,635	-				-1.3
1,277,637	-				-0.4
1,277,697	+				+0.1
1,277,705	+				-0.2
1,277,756	+				-0.8
1,277,764	-				+0.7
1,277,764	-				-0.3
1,277,764	-				-0.2
1,277,769	-				+1.1
1,277,799	+				-0.7
1,277,809	-				-0.6
1,277,825	+				-0.5
1,277,825	+				+0.2
1,277,848	-				-0.1
1,277,848	-				-0.1
1,277,850	-				+1.2
1,277,860	+				-0.5
1,277,860	+				+0.2
1,277,868	-				+0.6
1,277,868	-				-1.3
1,277,909	+				+2.2
1,277,920	-				-0.0
1,277,953	-				-1.3
1,277,953	-				+0.4
1,277,957	+				+1.5
1,277,957	+				+0.2
1,277,966	-				-1.8
1,277,971	-				+0.0
1,277,991	-				-1.2
1,278,004	+				-0.0
1,278,011	+				-1.5
1,278,012	-				+0.1
1,278,012	-				-0.0
1,278,012	-				-2.8
1,278,019	-		GFF1249	0.10	+2.0
1,278,019	-		GFF1249	0.10	+0.4
1,278,034	+		GFF1249	0.11	+0.1
1,278,035	+		GFF1249	0.11	-1.3
1,278,053	-		GFF1249	0.13	-1.4
1,278,057	-		GFF1249	0.13	+0.4
1,278,062	-		GFF1249	0.13	-0.0
1,278,064	+		GFF1249	0.14	-0.2
1,278,067	-		GFF1249	0.14	+0.0
1,278,067	-		GFF1249	0.14	-0.6
1,278,085	-		GFF1249	0.15	+0.8
1,278,101	-		GFF1249	0.16	-0.3
1,278,108	+		GFF1249	0.17	+0.3
1,278,116	+		GFF1249	0.17	+1.5
1,278,138	-		GFF1249	0.19	-0.3
1,278,140	+		GFF1249	0.19	+1.6
1,278,161	+		GFF1249	0.21	+0.0
1,278,161	+		GFF1249	0.21	+0.7
1,278,161	+		GFF1249	0.21	-2.3
1,278,166	+		GFF1249	0.21	-0.4
1,278,169	-		GFF1249	0.21	-0.2
1,278,169	-		GFF1249	0.21	-0.2
1,278,174	-		GFF1249	0.21	+0.7
1,278,177	+		GFF1249	0.22	+0.5
1,278,187	+		GFF1249	0.22	-0.3
1,278,213	-		GFF1249	0.24	-1.0
1,278,215	+		GFF1249	0.24	-0.8
1,278,223	-		GFF1249	0.25	-0.9
1,278,223	-		GFF1249	0.25	-2.0
1,278,247	+		GFF1249	0.27	-0.4
1,278,249	+		GFF1249	0.27	-0.7
1,278,254	+		GFF1249	0.27	-0.0
1,278,254	+		GFF1249	0.27	-0.2
1,278,262	-		GFF1249	0.28	-1.2
1,278,262	-		GFF1249	0.28	-2.1
1,278,282	+		GFF1249	0.29	-1.9
1,278,290	-		GFF1249	0.30	+0.9
1,278,332	+		GFF1249	0.33	+0.4
1,278,337	+		GFF1249	0.33	-0.9
1,278,352	+		GFF1249	0.34	-0.7
1,278,375	+		GFF1249	0.36	-1.6
1,278,419	+		GFF1249	0.39	-0.6
1,278,427	-		GFF1249	0.40	-1.3
1,278,427	-		GFF1249	0.40	-0.3
1,278,427	-		GFF1249	0.40	+0.6
1,278,427	-		GFF1249	0.40	-0.2
1,278,449	+		GFF1249	0.41	-0.9
1,278,449	+		GFF1249	0.41	-1.0
1,278,464	+		GFF1249	0.42	-1.5
1,278,472	-		GFF1249	0.43	+0.7
1,278,517	-		GFF1249	0.46	+1.0
1,278,519	+		GFF1249	0.46	+0.2
1,278,519	+		GFF1249	0.46	+0.3
1,278,527	-		GFF1249	0.47	+0.3
1,278,527	-		GFF1249	0.47	+0.4
1,278,541	-		GFF1249	0.48	-0.4
1,278,554	+		GFF1249	0.49	-2.2
1,278,554	+		GFF1249	0.49	-1.6
1,278,562	-		GFF1249	0.49	-0.2
1,278,562	-		GFF1249	0.49	-1.1
1,278,565	+		GFF1249	0.50	-0.8
1,278,579	+		GFF1249	0.51	+1.9
1,278,593	+		GFF1249	0.52	-1.2
1,278,610	+		GFF1249	0.53	-0.3
1,278,610	+		GFF1249	0.53	+1.2
1,278,610	+		GFF1249	0.53	-2.1
1,278,610	+		GFF1249	0.53	-0.3
1,278,610	+		GFF1249	0.53	+0.4
1,278,610	+		GFF1249	0.53	+0.4
1,278,610	+		GFF1249	0.53	-0.6
1,278,610	+		GFF1249	0.53	-0.3
1,278,610	+		GFF1249	0.53	+0.4
1,278,610	+		GFF1249	0.53	+1.1
1,278,618	-		GFF1249	0.53	-1.3
1,278,618	-		GFF1249	0.53	+0.2
1,278,618	-		GFF1249	0.53	+0.1
1,278,618	-		GFF1249	0.53	+0.4
1,278,618	-		GFF1249	0.53	+0.8
1,278,618	-		GFF1249	0.53	-1.1
1,278,618	-		GFF1249	0.53	+1.1
1,278,618	-		GFF1249	0.53	-1.9
1,278,618	-		GFF1249	0.53	-0.4
1,278,618	-		GFF1249	0.53	+0.8
1,278,618	-		GFF1249	0.53	-1.3
1,278,618	-		GFF1249	0.53	-1.1
1,278,619	+		GFF1249	0.53	+0.2
1,278,625	-		GFF1249	0.54	-1.7
1,278,642	-		GFF1249	0.55	-1.8
1,278,662	+		GFF1249	0.57	-0.2
1,278,664	+		GFF1249	0.57	+1.8
1,278,665	-		GFF1249	0.57	-1.3
1,278,674	+		GFF1249	0.57	-0.0
1,278,695	+		GFF1249	0.59	-0.0
1,278,695	+		GFF1249	0.59	-1.1
1,278,699	+		GFF1249	0.59	+0.2
1,278,700	+		GFF1249	0.59	-1.1
1,278,700	+		GFF1249	0.59	+1.2
1,278,703	-		GFF1249	0.59	-0.6
1,278,708	-		GFF1249	0.60	+2.0
1,278,708	-		GFF1249	0.60	-1.4
1,278,710	+		GFF1249	0.60	-0.3
1,278,710	+		GFF1249	0.60	-0.1
1,278,710	+		GFF1249	0.60	+0.2
1,278,718	-		GFF1249	0.61	+0.2
1,278,718	-		GFF1249	0.61	+0.8
1,278,718	-		GFF1249	0.61	+1.0
1,278,718	-		GFF1249	0.61	+0.7
1,278,733	+		GFF1249	0.62	-0.7
1,278,751	+		GFF1249	0.63	-2.0
1,278,792	-		GFF1249	0.66	-0.1
1,278,792	-		GFF1249	0.66	+0.8
1,278,799	+		GFF1249	0.66	-0.5
1,278,807	-		GFF1249	0.67	+0.7
1,278,828	-		GFF1249	0.68	+1.0
1,278,840	+		GFF1249	0.69	-2.5
1,278,848	-		GFF1249	0.70	-0.4
1,278,854	+		GFF1249	0.70	+0.0
1,278,854	+		GFF1249	0.70	-0.1
1,278,854	+		GFF1249	0.70	+0.2
1,278,856	-		GFF1249	0.70	-0.7
1,278,862	+		GFF1249	0.71	-0.9
1,278,862	-		GFF1249	0.71	-1.6
1,278,862	-		GFF1249	0.71	-0.3
1,278,862	-		GFF1249	0.71	-1.7
1,278,862	-		GFF1249	0.71	-1.7
1,278,864	+		GFF1249	0.71	+0.4
1,278,864	+		GFF1249	0.71	+1.0
1,278,872	-		GFF1249	0.72	-1.8
1,278,872	-		GFF1249	0.72	-0.6
1,278,883	+		GFF1249	0.72	+0.4
1,278,884	+		GFF1249	0.72	-0.4
1,278,884	+		GFF1249	0.72	-0.6
1,278,884	+		GFF1249	0.72	-0.2
1,278,884	+		GFF1249	0.72	-1.5
1,278,884	+		GFF1249	0.72	-1.1
1,278,884	+		GFF1249	0.72	+0.3
1,278,892	-		GFF1249	0.73	+0.2
1,278,892	-		GFF1249	0.73	-0.8
1,278,892	-		GFF1249	0.73	-0.7
1,278,892	-		GFF1249	0.73	+2.4
1,278,892	-		GFF1249	0.73	-0.8
1,278,944	+		GFF1249	0.77	-0.3
1,278,947	-		GFF1249	0.77	-0.9
1,278,961	+		GFF1249	0.78	-0.2
1,278,974	-		GFF1249	0.79	-0.5
1,278,982	+		GFF1249	0.80	+1.0
1,278,986	+		GFF1249	0.80	-2.2
1,278,995	+		GFF1249	0.80	-0.4
1,279,010	+		GFF1249	0.82	-0.8
1,279,010	+		GFF1249	0.82	-2.3
1,279,018	-		GFF1249	0.82	+0.2
1,279,020	+		GFF1249	0.82	+0.4
1,279,028	-		GFF1249	0.83	-1.1
1,279,028	-		GFF1249	0.83	-0.0
1,279,028	-		GFF1249	0.83	-2.4
1,279,043	-		GFF1249	0.84	+0.7
1,279,088	+		GFF1249	0.87	-0.6
1,279,103	+		GFF1249	0.88	-0.7
1,279,108	+		GFF1249	0.89	-0.9
1,279,108	+		GFF1249	0.89	+1.5
1,279,108	+		GFF1249	0.89	-0.2
1,279,108	+		GFF1249	0.89	-0.1
1,279,108	+		GFF1249	0.89	-0.8
1,279,111	-		GFF1249	0.89	+1.5
1,279,116	-		GFF1249	0.89	-0.3
1,279,116	-		GFF1249	0.89	-0.7
1,279,116	-		GFF1249	0.89	-0.2
1,279,116	-		GFF1249	0.89	-0.9
1,279,116	-		GFF1249	0.89	+1.0
1,279,116	-		GFF1249	0.89	+0.2
1,279,153	+				-0.8
1,279,153	+				-1.1
1,279,153	+				+0.3
1,279,153	+				+1.1
1,279,179	+				+0.5
1,279,186	+				-2.5
1,279,193	+				-1.3
1,279,193	+				+0.3
1,279,193	+				+0.1
1,279,193	+				-0.2
1,279,193	+				-0.8
1,279,193	+				+0.5
1,279,193	+				-0.4
1,279,193	+				-2.3
1,279,198	+				-2.3
1,279,201	-				-0.5
1,279,201	-				-0.5
1,279,219	+				-0.4
1,279,224	+				+0.4
1,279,232	-				-0.4
1,279,234	+				+1.2
1,279,242	-				+0.5
1,279,259	-				-1.2
1,279,259	-				-1.6
1,279,259	-				-0.9
1,279,259	-				+0.7
1,279,284	+				-1.0
1,279,285	+				-2.1
1,279,292	-				-1.4
1,279,292	-				-1.2
1,279,292	-				+0.2
1,279,292	-				+0.1
1,279,302	+				-1.8
1,279,310	-				-0.5
1,279,312	+				+0.7
1,279,312	+				+1.2
1,279,315	-				+0.2
1,279,320	-				+0.1
1,279,360	-				-0.3
1,279,373	-				-0.2
1,279,374	+				-0.4
1,279,382	-				-0.2
1,279,433	+				+0.7
1,279,441	+				+0.6
1,279,497	+		GFF1250	0.26	+1.2
1,279,497	+		GFF1250	0.26	-1.8
1,279,516	+		GFF1250	0.36	-1.2
1,279,529	+		GFF1250	0.42	+0.0
1,279,529	+		GFF1250	0.42	+0.0
1,279,539	+		GFF1250	0.47	+0.6
1,279,547	-		GFF1250	0.51	+0.9
1,279,556	+		GFF1250	0.56	+0.8
1,279,576	+		GFF1250	0.66	-0.0
1,279,586	+		GFF1250	0.71	-1.1
1,279,586	+		GFF1250	0.71	-0.1
1,279,591	+		GFF1250	0.73	+0.1
1,279,594	+		GFF1250	0.75	+1.6
1,279,594	+		GFF1250	0.75	-1.1
1,279,594	-		GFF1250	0.75	-1.7
1,279,594	-		GFF1250	0.75	+1.2
1,279,594	-		GFF1250	0.75	-1.0
1,279,630	+				+0.3
1,279,638	+				-0.6
1,279,667	+				+1.2
1,279,669	+				-0.1
1,279,675	-				+0.6
1,279,687	+				-0.0
1,279,687	+				-0.7
1,279,700	+				+0.2
1,279,745	+				-0.5
1,279,752	+				+0.2
1,279,754	+				-0.8
1,279,754	+				+0.5
1,279,762	-				-0.6
1,279,787	+		GFF1251	0.19	+0.2
1,279,818	-		GFF1251	0.41	+0.0
1,279,857	+		GFF1251	0.70	-0.5
1,279,911	-				-1.8
1,279,922	+				+1.0
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1,279,922	+				+0.5
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1,279,930	-				+0.2
1,279,939	+				+0.0
1,279,944	+				-0.7
1,279,944	+				-0.1
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1,279,944	+				+0.3
1,279,944	+				-0.3
1,279,952	-				-1.3
1,279,952	-				-0.1
1,279,952	-				+0.8
1,279,952	-				-1.5
1,279,952	-				+0.7
1,279,952	-				-0.1
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1,279,959	+				-0.7
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1,279,967	-				-0.7
1,279,967	-				+1.0
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1,279,967	-				+0.7
1,279,969	+				-1.7
1,279,994	+				-2.6
1,279,996	-				+0.0
1,280,002	-				+0.2
1,280,002	-				-1.2
1,280,002	-				-1.7
1,280,002	-				-0.6
1,280,002	-				+1.3
1,280,009	-				-1.8
1,280,047	+		GFF1252	0.12	+0.1
1,280,072	+		GFF1252	0.14	-1.6
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1,280,080	-		GFF1252	0.15	-1.5
1,280,092	+		GFF1252	0.16	-0.6
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1,280,100	-		GFF1252	0.17	-2.9
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1,280,107	+		GFF1252	0.17	-2.5
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1,280,250	-		GFF1252	0.30	-0.5