Strain Fitness in Sphingobium sp. HT1-2 around GFF1248

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,276,361	-		GFF1247	0.58	-1.1
1,276,363	-		GFF1247	0.58	-1.2
1,276,365	+		GFF1247	0.58	+0.1
1,276,373	-		GFF1247	0.59	+1.0
1,276,380	+		GFF1247	0.59	+0.4
1,276,383	-		GFF1247	0.59	-1.3
1,276,392	-		GFF1247	0.60	+0.0
1,276,396	+		GFF1247	0.60	+0.0
1,276,397	+		GFF1247	0.60	-0.1
1,276,404	-		GFF1247	0.60	+1.2
1,276,419	-		GFF1247	0.61	+1.0
1,276,428	-		GFF1247	0.61	-2.3
1,276,436	-		GFF1247	0.62	-0.7
1,276,471	+		GFF1247	0.63	-0.4
1,276,471	-		GFF1247	0.63	-0.9
1,276,476	-		GFF1247	0.63	-0.0
1,276,478	+		GFF1247	0.64	-0.6
1,276,478	+		GFF1247	0.64	+1.0
1,276,483	+		GFF1247	0.64	+1.2
1,276,491	-		GFF1247	0.64	+0.4
1,276,501	+		GFF1247	0.65	+0.5
1,276,501	+		GFF1247	0.65	-0.1
1,276,501	+		GFF1247	0.65	-0.0
1,276,504	-		GFF1247	0.65	-0.3
1,276,509	-		GFF1247	0.65	-0.5
1,276,514	+		GFF1247	0.65	+0.3
1,276,520	+		GFF1247	0.66	+0.2
1,276,522	-		GFF1247	0.66	-1.8
1,276,524	+		GFF1247	0.66	+0.1
1,276,532	-		GFF1247	0.66	-1.1
1,276,569	+		GFF1247	0.68	-0.1
1,276,569	+		GFF1247	0.68	+1.1
1,276,569	+		GFF1247	0.68	-0.5
1,276,570	+		GFF1247	0.68	-0.6
1,276,577	-		GFF1247	0.68	+0.4
1,276,577	-		GFF1247	0.68	-0.6
1,276,577	-		GFF1247	0.68	+0.2
1,276,580	+		GFF1247	0.68	-0.4
1,276,582	+		GFF1247	0.68	-0.1
1,276,588	-		GFF1247	0.69	-1.5
1,276,588	-		GFF1247	0.69	-1.4
1,276,588	-		GFF1247	0.69	-0.7
1,276,588	-		GFF1247	0.69	-0.6
1,276,590	-		GFF1247	0.69	+0.7
1,276,597	+		GFF1247	0.69	-0.8
1,276,597	+		GFF1247	0.69	-0.9
1,276,597	+		GFF1247	0.69	-0.7
1,276,605	-		GFF1247	0.69	-0.9
1,276,605	-		GFF1247	0.69	-0.8
1,276,605	-		GFF1247	0.69	+1.1
1,276,605	-		GFF1247	0.69	-1.2
1,276,605	-		GFF1247	0.69	-0.8
1,276,605	-		GFF1247	0.69	-1.6
1,276,605	-		GFF1247	0.69	-0.9
1,276,605	-		GFF1247	0.69	+0.2
1,276,605	-		GFF1247	0.69	-0.9
1,276,609	+		GFF1247	0.70	-0.8
1,276,610	-		GFF1247	0.70	-0.2
1,276,610	-		GFF1247	0.70	+0.9
1,276,611	-		GFF1247	0.70	-0.3
1,276,640	-		GFF1247	0.71	-1.8
1,276,650	+		GFF1247	0.72	-1.3
1,276,685	+		GFF1247	0.73	+0.1
1,276,685	+		GFF1247	0.73	-0.8
1,276,687	+		GFF1247	0.73	-1.5
1,276,687	+		GFF1247	0.73	+1.8
1,276,693	-		GFF1247	0.74	-0.5
1,276,695	-		GFF1247	0.74	+0.8
1,276,695	-		GFF1247	0.74	-0.4
1,276,695	-		GFF1247	0.74	+0.4
1,276,695	-		GFF1247	0.74	+0.1
1,276,720	-		GFF1247	0.75	-0.4
1,276,722	-		GFF1247	0.75	-0.8
1,276,736	+		GFF1247	0.76	-0.3
1,276,738	+		GFF1247	0.76	+0.2
1,276,741	-		GFF1247	0.76	+0.0
1,276,746	-		GFF1247	0.76	-0.9
1,276,746	-		GFF1247	0.76	-0.3
1,276,746	-		GFF1247	0.76	-0.1
1,276,746	-		GFF1247	0.76	-0.6
1,276,748	+		GFF1247	0.76	-0.8
1,276,751	-		GFF1247	0.76	+0.5
1,276,756	-		GFF1247	0.76	-1.3
1,276,769	+		GFF1247	0.77	+1.7
1,276,777	-		GFF1247	0.77	-0.1
1,276,777	-		GFF1247	0.77	-0.9
1,276,787	+		GFF1247	0.78	+0.8
1,276,792	+		GFF1247	0.78	+0.7
1,276,797	+		GFF1247	0.78	-0.8
1,276,800	-		GFF1247	0.79	-1.1
1,276,800	-		GFF1247	0.79	+0.7
1,276,800	-		GFF1247	0.79	-0.9
1,276,800	-		GFF1247	0.79	-1.8
1,276,805	-		GFF1247	0.79	+0.9
1,276,817	+		GFF1247	0.79	+0.6
1,276,826	+		GFF1247	0.80	-0.2
1,276,849	+		GFF1247	0.81	-0.7
1,276,857	-		GFF1247	0.81	-0.0
1,276,857	-		GFF1247	0.81	-1.0
1,276,886	+		GFF1247	0.83	-2.8
1,276,886	+		GFF1247	0.83	-0.3
1,276,886	+		GFF1247	0.83	-2.3
1,276,891	+		GFF1247	0.83	+0.5
1,276,894	-		GFF1247	0.83	-0.2
1,276,899	-		GFF1247	0.83	+0.5
1,276,943	+		GFF1247	0.85	+0.2
1,276,952	+		GFF1247	0.86	-1.3
1,276,970	+		GFF1247	0.86	-1.3
1,276,970	+		GFF1247	0.86	-1.0
1,276,970	+		GFF1247	0.86	-1.2
1,276,972	-		GFF1247	0.87	-1.3
1,276,977	-		GFF1247	0.87	-0.8
1,276,996	+		GFF1247	0.88	-1.6
1,276,997	+		GFF1247	0.88	+0.5
1,277,003	+		GFF1247	0.88	-1.7
1,277,005	+		GFF1247	0.88	+1.1
1,277,005	+		GFF1247	0.88	-1.1
1,277,005	-		GFF1247	0.88	-2.3
1,277,011	-		GFF1247	0.88	+0.5
1,277,011	-		GFF1247	0.88	+0.4
1,277,041	+		GFF1247	0.90	+0.2
1,277,043	+		GFF1247	0.90	-0.8
1,277,043	+		GFF1247	0.90	-0.8
1,277,048	+				-1.1
1,277,048	+				-1.0
1,277,048	+				-0.3
1,277,048	+				+0.5
1,277,048	+				-1.6
1,277,049	-				-0.3
1,277,056	-				+0.4
1,277,056	-				+0.3
1,277,056	-				-0.3
1,277,056	-				-0.0
1,277,056	-				-0.2
1,277,056	-				-0.3
1,277,058	+				-0.3
1,277,061	+				+0.7
1,277,075	+				-0.0
1,277,112	+				-0.6
1,277,112	+				-2.5
1,277,120	-				+0.6
1,277,130	+				+1.1
1,277,134	+				-0.4
1,277,148	+				+0.2
1,277,148	+				+0.5
1,277,148	+				-1.2
1,277,160	+				-0.3
1,277,168	-				+0.8
1,277,169	+				+0.7
1,277,169	+				-1.3
1,277,188	+				+0.1
1,277,188	+				-0.7
1,277,188	+				-0.4
1,277,188	+				+0.4
1,277,196	-				-0.1
1,277,196	-				+1.0
1,277,196	-				-0.8
1,277,229	+				-0.5
1,277,256	+				-0.3
1,277,264	-				-0.7
1,277,280	+				+0.7
1,277,313	+				-0.8
1,277,317	-				+0.5
1,277,321	-				-0.6
1,277,321	-				+0.1
1,277,321	-				+1.2
1,277,369	+				-0.9
1,277,377	-				-0.2
1,277,379	+				+1.0
1,277,397	+		GFF1248	0.17	-0.5
1,277,397	+		GFF1248	0.17	+0.9
1,277,405	-		GFF1248	0.20	-0.0
1,277,405	-		GFF1248	0.20	+0.7
1,277,405	-		GFF1248	0.20	-2.1
1,277,405	-		GFF1248	0.20	+0.4
1,277,405	-		GFF1248	0.20	-0.6
1,277,405	-		GFF1248	0.20	+0.9
1,277,426	+		GFF1248	0.29	-0.4
1,277,426	+		GFF1248	0.29	-1.1
1,277,426	+		GFF1248	0.29	-0.2
1,277,426	+		GFF1248	0.29	-1.4
1,277,431	+		GFF1248	0.32	-0.1
1,277,439	-		GFF1248	0.35	-0.7
1,277,452	-		GFF1248	0.41	-0.1
1,277,479	-		GFF1248	0.52	-0.9
1,277,482	+		GFF1248	0.54	-1.5
1,277,525	-		GFF1248	0.72	+0.0
1,277,535	+		GFF1248	0.77	-1.2
1,277,535	-		GFF1248	0.77	-0.5
1,277,535	-		GFF1248	0.77	+0.3
1,277,543	-		GFF1248	0.80	+1.4
1,277,543	-		GFF1248	0.80	+0.4
1,277,549	-		GFF1248	0.83	-2.1
1,277,554	-		GFF1248	0.85	-0.7
1,277,554	-		GFF1248	0.85	+0.9
1,277,558	+		GFF1248	0.87	+0.4
1,277,558	+		GFF1248	0.87	-0.1
1,277,558	+		GFF1248	0.87	-0.4
1,277,566	-				-0.7
1,277,577	+				-0.3
1,277,577	+				+0.2
1,277,577	-				-0.7
1,277,607	+				+0.7
1,277,628	-				-1.5
1,277,635	-				-1.3
1,277,637	-				-0.4
1,277,697	+				+0.1
1,277,705	+				-0.2
1,277,756	+				-0.8
1,277,764	-				+0.7
1,277,764	-				-0.3
1,277,764	-				-0.2
1,277,769	-				+1.1
1,277,799	+				-0.7
1,277,809	-				-0.6
1,277,825	+				-0.5
1,277,825	+				+0.2
1,277,848	-				-0.1
1,277,848	-				-0.1
1,277,850	-				+1.2
1,277,860	+				-0.5
1,277,860	+				+0.2
1,277,868	-				+0.6
1,277,868	-				-1.3
1,277,909	+				+2.2
1,277,920	-				-0.0
1,277,953	-				-1.3
1,277,953	-				+0.4
1,277,957	+				+1.5
1,277,957	+				+0.2
1,277,966	-				-1.8
1,277,971	-				+0.0
1,277,991	-				-1.2
1,278,004	+				-0.0
1,278,011	+				-1.5
1,278,012	-				+0.1
1,278,012	-				-0.0
1,278,012	-				-2.8
1,278,019	-		GFF1249	0.10	+2.0
1,278,019	-		GFF1249	0.10	+0.4
1,278,034	+		GFF1249	0.11	+0.1
1,278,035	+		GFF1249	0.11	-1.3
1,278,053	-		GFF1249	0.13	-1.4
1,278,057	-		GFF1249	0.13	+0.4
1,278,062	-		GFF1249	0.13	-0.0
1,278,064	+		GFF1249	0.14	-0.2
1,278,067	-		GFF1249	0.14	+0.0
1,278,067	-		GFF1249	0.14	-0.6
1,278,085	-		GFF1249	0.15	+0.8
1,278,101	-		GFF1249	0.16	-0.3
1,278,108	+		GFF1249	0.17	+0.3
1,278,116	+		GFF1249	0.17	+1.5
1,278,138	-		GFF1249	0.19	-0.3
1,278,140	+		GFF1249	0.19	+1.6
1,278,161	+		GFF1249	0.21	+0.0
1,278,161	+		GFF1249	0.21	+0.7
1,278,161	+		GFF1249	0.21	-2.3
1,278,166	+		GFF1249	0.21	-0.4
1,278,169	-		GFF1249	0.21	-0.2
1,278,169	-		GFF1249	0.21	-0.2
1,278,174	-		GFF1249	0.21	+0.7
1,278,177	+		GFF1249	0.22	+0.5
1,278,187	+		GFF1249	0.22	-0.3
1,278,213	-		GFF1249	0.24	-1.0
1,278,215	+		GFF1249	0.24	-0.8
1,278,223	-		GFF1249	0.25	-0.9
1,278,223	-		GFF1249	0.25	-2.0
1,278,247	+		GFF1249	0.27	-0.4
1,278,249	+		GFF1249	0.27	-0.7
1,278,254	+		GFF1249	0.27	-0.0
1,278,254	+		GFF1249	0.27	-0.2
1,278,262	-		GFF1249	0.28	-1.2
1,278,262	-		GFF1249	0.28	-2.1
1,278,282	+		GFF1249	0.29	-1.9
1,278,290	-		GFF1249	0.30	+0.9
1,278,332	+		GFF1249	0.33	+0.4
1,278,337	+		GFF1249	0.33	-0.9
1,278,352	+		GFF1249	0.34	-0.7
1,278,375	+		GFF1249	0.36	-1.6
1,278,419	+		GFF1249	0.39	-0.6
1,278,427	-		GFF1249	0.40	-1.3
1,278,427	-		GFF1249	0.40	-0.3
1,278,427	-		GFF1249	0.40	+0.6
1,278,427	-		GFF1249	0.40	-0.2
1,278,449	+		GFF1249	0.41	-0.9
1,278,449	+		GFF1249	0.41	-1.0
1,278,464	+		GFF1249	0.42	-1.5
1,278,472	-		GFF1249	0.43	+0.7
1,278,517	-		GFF1249	0.46	+1.0
1,278,519	+		GFF1249	0.46	+0.2
1,278,519	+		GFF1249	0.46	+0.3
1,278,527	-		GFF1249	0.47	+0.3
1,278,527	-		GFF1249	0.47	+0.4
1,278,541	-		GFF1249	0.48	-0.4
1,278,554	+		GFF1249	0.49	-2.2
1,278,554	+		GFF1249	0.49	-1.6
1,278,562	-		GFF1249	0.49	-0.2
1,278,562	-		GFF1249	0.49	-1.1
1,278,565	+		GFF1249	0.50	-0.8
1,278,579	+		GFF1249	0.51	+1.9