Strain Fitness in Sphingobium sp. HT1-2 around GFF1232

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,261,846	-		GFF1231	0.26	-0.5
1,261,846	-		GFF1231	0.26	-1.1
1,261,862	+		GFF1231	0.28	-0.9
1,261,893	+		GFF1231	0.30	-0.8
1,261,963	+		GFF1231	0.37	-0.6
1,261,977	+		GFF1231	0.38	-0.3
1,261,977	+		GFF1231	0.38	+0.4
1,261,986	+		GFF1231	0.39	-0.5
1,261,996	+		GFF1231	0.40	+0.7
1,262,013	+		GFF1231	0.41	+1.0
1,262,018	+		GFF1231	0.41	-0.4
1,262,018	+		GFF1231	0.41	-1.4
1,262,021	-		GFF1231	0.42	-1.8
1,262,035	+		GFF1231	0.43	+1.0
1,262,043	-		GFF1231	0.44	-0.1
1,262,043	-		GFF1231	0.44	+0.1
1,262,043	-		GFF1231	0.44	-0.7
1,262,060	+		GFF1231	0.45	-0.1
1,262,066	+		GFF1231	0.46	+0.7
1,262,079	-		GFF1231	0.47	-0.3
1,262,089	+		GFF1231	0.48	-1.5
1,262,089	+		GFF1231	0.48	-0.2
1,262,097	-		GFF1231	0.48	-0.1
1,262,097	-		GFF1231	0.48	+0.7
1,262,116	+		GFF1231	0.50	+0.7
1,262,124	-		GFF1231	0.51	-0.6
1,262,129	-		GFF1231	0.51	-1.8
1,262,145	+		GFF1231	0.53	-2.0
1,262,145	-		GFF1231	0.53	+0.3
1,262,147	-		GFF1231	0.53	-0.2
1,262,157	-		GFF1231	0.54	+0.3
1,262,160	+		GFF1231	0.54	-1.4
1,262,160	+		GFF1231	0.54	-1.2
1,262,160	+		GFF1231	0.54	-0.5
1,262,160	+		GFF1231	0.54	-1.7
1,262,163	-		GFF1231	0.54	-0.3
1,262,168	-		GFF1231	0.55	+0.2
1,262,168	-		GFF1231	0.55	-0.3
1,262,168	-		GFF1231	0.55	+0.5
1,262,172	-		GFF1231	0.55	-1.6
1,262,182	-		GFF1231	0.56	-0.5
1,262,187	+		GFF1231	0.56	+0.2
1,262,192	+		GFF1231	0.57	-1.3
1,262,192	+		GFF1231	0.57	+0.2
1,262,192	+		GFF1231	0.57	-2.1
1,262,227	-		GFF1231	0.60	-0.9
1,262,245	+		GFF1231	0.61	+0.3
1,262,250	+		GFF1231	0.62	+0.3
1,262,250	+		GFF1231	0.62	+0.8
1,262,250	+		GFF1231	0.62	-0.7
1,262,250	+		GFF1231	0.62	-1.4
1,262,250	+		GFF1231	0.62	+0.8
1,262,250	+		GFF1231	0.62	+0.7
1,262,255	+		GFF1231	0.62	+1.5
1,262,255	+		GFF1231	0.62	-2.1
1,262,258	-		GFF1231	0.63	-2.7
1,262,258	-		GFF1231	0.63	-0.2
1,262,258	-		GFF1231	0.63	-0.8
1,262,258	-		GFF1231	0.63	+0.7
1,262,258	-		GFF1231	0.63	-0.1
1,262,258	-		GFF1231	0.63	-1.9
1,262,259	+		GFF1231	0.63	-0.1
1,262,263	-		GFF1231	0.63	-0.2
1,262,263	-		GFF1231	0.63	-0.0
1,262,267	-		GFF1231	0.63	+0.0
1,262,287	+		GFF1231	0.65	+0.2
1,262,304	+		GFF1231	0.67	+0.4
1,262,307	-		GFF1231	0.67	-1.4
1,262,324	+		GFF1231	0.68	+0.2
1,262,324	+		GFF1231	0.68	-0.8
1,262,332	-		GFF1231	0.69	-0.1
1,262,344	+		GFF1231	0.70	-1.3
1,262,351	+		GFF1231	0.71	-0.2
1,262,352	-		GFF1231	0.71	+0.0
1,262,357	+		GFF1231	0.71	-0.3
1,262,369	+		GFF1231	0.72	+0.1
1,262,388	-		GFF1231	0.74	-1.5
1,262,388	-		GFF1231	0.74	+0.2
1,262,413	+		GFF1231	0.76	-0.2
1,262,413	+		GFF1231	0.76	-2.0
1,262,413	+		GFF1231	0.76	+0.6
1,262,418	+		GFF1231	0.77	-0.7
1,262,426	-		GFF1231	0.77	-0.1
1,262,426	-		GFF1231	0.77	+0.2
1,262,440	+		GFF1231	0.79	-1.5
1,262,440	+		GFF1231	0.79	-1.3
1,262,440	+		GFF1231	0.79	-1.3
1,262,440	+		GFF1231	0.79	+0.1
1,262,448	-		GFF1231	0.79	-0.8
1,262,448	-		GFF1231	0.79	-0.6
1,262,448	-		GFF1231	0.79	-0.4
1,262,475	+		GFF1231	0.82	-2.2
1,262,483	+		GFF1231	0.82	-1.9
1,262,488	+		GFF1231	0.83	-1.1
1,262,491	-		GFF1231	0.83	-0.1
1,262,491	-		GFF1231	0.83	-0.8
1,262,493	+		GFF1231	0.83	-0.9
1,262,493	+		GFF1231	0.83	-0.2
1,262,493	+		GFF1231	0.83	-0.5
1,262,493	+		GFF1231	0.83	-0.5
1,262,493	+		GFF1231	0.83	+0.8
1,262,493	+		GFF1231	0.83	-0.3
1,262,493	+		GFF1231	0.83	-0.8
1,262,493	+		GFF1231	0.83	+1.5
1,262,493	+		GFF1231	0.83	+0.9
1,262,493	+		GFF1231	0.83	+0.2
1,262,493	+		GFF1231	0.83	-1.7
1,262,493	+		GFF1231	0.83	-0.8
1,262,501	-		GFF1231	0.84	-0.7
1,262,501	-		GFF1231	0.84	-1.1
1,262,501	-		GFF1231	0.84	-1.1
1,262,501	-		GFF1231	0.84	-0.6
1,262,501	-		GFF1231	0.84	-1.0
1,262,501	-		GFF1231	0.84	+0.3
1,262,501	-		GFF1231	0.84	-1.6
1,262,501	-		GFF1231	0.84	-2.1
1,262,501	-		GFF1231	0.84	+0.1
1,262,501	-		GFF1231	0.84	-0.2
1,262,501	-		GFF1231	0.84	+0.4
1,262,501	-		GFF1231	0.84	-0.1
1,262,503	-		GFF1231	0.84	-0.6
1,262,511	+		GFF1231	0.85	-0.1
1,262,511	+		GFF1231	0.85	-1.5
1,262,534	+		GFF1231	0.87	-1.4
1,262,534	-		GFF1231	0.87	+0.3
1,262,566	+		GFF1231	0.90	-1.6
1,262,569	+				+0.4
1,262,569	+				-0.1
1,262,569	+				+1.2
1,262,569	+				-0.8
1,262,576	-				-0.7
1,262,577	-				-0.6
1,262,577	-				+0.8
1,262,577	-				-0.3
1,262,577	-				-2.4
1,262,577	-				+1.0
1,262,577	-				-2.5
1,262,602	+				-2.0
1,262,610	-				-1.5
1,262,632	+				-0.0
1,262,642	+				-1.1
1,262,642	+				-1.7
1,262,649	+				-2.3
1,262,657	-				-1.2
1,262,657	-				-0.9
1,262,657	-				+0.2
1,262,659	+				-0.9
1,262,672	+				+1.1
1,262,736	-				+0.7
1,262,777	+				+0.7
1,262,782	+				-1.2
1,262,785	+				-0.8
1,262,785	-				+0.7
1,262,785	-				-1.5
1,262,792	+				-1.7
1,262,798	-				-0.1
1,262,811	+				+0.6
1,262,814	-				-1.2
1,262,816	+				+0.2
1,262,824	-				+0.3
1,262,824	-				+0.3
1,262,824	-				-0.1
1,262,834	-				-0.1
1,262,839	+		GFF1232	0.10	+0.1
1,262,847	-		GFF1232	0.13	+0.3
1,262,857	+		GFF1232	0.16	+0.2
1,262,857	+		GFF1232	0.16	-0.9
1,262,868	-		GFF1232	0.19	-0.2
1,262,870	+		GFF1232	0.20	-0.5
1,262,870	+		GFF1232	0.20	-1.1
1,262,870	+		GFF1232	0.20	+0.4
1,262,870	+		GFF1232	0.20	+0.8
1,262,872	+		GFF1232	0.21	+0.5
1,262,878	-		GFF1232	0.23	-1.5
1,262,878	-		GFF1232	0.23	-0.4
1,262,880	+		GFF1232	0.23	+1.3
1,262,897	-		GFF1232	0.29	-0.2
1,262,899	+		GFF1232	0.29	+0.7
1,262,899	+		GFF1232	0.29	+0.6
1,262,900	+		GFF1232	0.30	+0.2
1,262,907	-		GFF1232	0.32	+0.3
1,262,908	-		GFF1232	0.32	+0.2
1,262,908	-		GFF1232	0.32	+0.8
1,262,910	-		GFF1232	0.33	-1.0
1,262,926	-		GFF1232	0.38	+0.3
1,262,931	-		GFF1232	0.39	-0.9
1,262,931	-		GFF1232	0.39	-0.1
1,262,941	-		GFF1232	0.43	-0.6
1,263,031	-		GFF1232	0.71	-2.4
1,263,061	+		GFF1232	0.81	-1.4
1,263,069	-		GFF1232	0.83	-0.9
1,263,082	+		GFF1232	0.87	-0.0
1,263,082	+		GFF1232	0.87	-0.3
1,263,082	+		GFF1232	0.87	+0.2
1,263,083	+		GFF1232	0.88	-0.6
1,263,090	-				-1.2
1,263,091	-				+1.3
1,263,122	+				+0.2
1,263,122	+				-0.8
1,263,122	+				+0.2
1,263,123	+				+0.8
1,263,128	+				-0.8
1,263,130	-				+0.9
1,263,130	-				+0.4
1,263,140	+				-1.4
1,263,140	+				-1.5
1,263,184	+				-0.6
1,263,191	+				-0.8
1,263,216	+				+0.2
1,263,218	-				+1.0
1,263,220	+		GFF1233	0.10	-1.2
1,263,220	+		GFF1233	0.10	-0.3
1,263,223	-		GFF1233	0.11	+0.4
1,263,223	-		GFF1233	0.11	-0.1
1,263,223	-		GFF1233	0.11	+1.1
1,263,225	+		GFF1233	0.11	-0.3
1,263,232	+		GFF1233	0.12	+0.2
1,263,241	-		GFF1233	0.14	+0.8
1,263,241	-		GFF1233	0.14	-0.4
1,263,241	-		GFF1233	0.14	+0.9
1,263,243	+		GFF1233	0.14	-1.0
1,263,245	-		GFF1233	0.14	-1.3
1,263,251	-		GFF1233	0.15	-0.2
1,263,251	-		GFF1233	0.15	-0.8
1,263,269	-		GFF1233	0.18	-0.2
1,263,269	-		GFF1233	0.18	-0.2
1,263,280	+		GFF1233	0.20	-0.5
1,263,280	+		GFF1233	0.20	-1.2
1,263,280	+		GFF1233	0.20	-0.9
1,263,288	-		GFF1233	0.22	+0.4
1,263,300	+		GFF1233	0.24	-1.5
1,263,319	-		GFF1233	0.27	-0.2
1,263,322	-		GFF1233	0.27	+0.0
1,263,329	-		GFF1233	0.29	+0.6
1,263,339	+		GFF1233	0.30	-0.1
1,263,351	-		GFF1233	0.32	-0.1
1,263,352	+		GFF1233	0.32	-0.3
1,263,352	+		GFF1233	0.32	-0.1
1,263,352	+		GFF1233	0.32	-0.6
1,263,352	+		GFF1233	0.32	-1.2
1,263,352	+		GFF1233	0.32	+0.2
1,263,352	+		GFF1233	0.32	+0.6
1,263,352	+		GFF1233	0.32	-0.6
1,263,352	+		GFF1233	0.32	+1.1
1,263,352	+		GFF1233	0.32	-0.0
1,263,360	-		GFF1233	0.34	-0.9
1,263,360	-		GFF1233	0.34	+0.2
1,263,360	-		GFF1233	0.34	-1.3
1,263,360	-		GFF1233	0.34	-0.1
1,263,421	-		GFF1233	0.44	-0.1
1,263,421	-		GFF1233	0.44	-0.6
1,263,431	-		GFF1233	0.46	-0.1
1,263,433	+		GFF1233	0.46	-0.1
1,263,433	-		GFF1233	0.46	-1.2
1,263,441	-		GFF1233	0.48	+0.2
1,263,464	+		GFF1233	0.51	+0.7
1,263,464	+		GFF1233	0.51	+0.5
1,263,464	+		GFF1233	0.51	+0.1
1,263,464	+		GFF1233	0.51	-1.5
1,263,472	-		GFF1233	0.53	+0.4
1,263,472	-		GFF1233	0.53	-1.2
1,263,472	-		GFF1233	0.53	-1.1
1,263,472	-		GFF1233	0.53	+1.2
1,263,472	-		GFF1233	0.53	+0.0
1,263,472	-		GFF1233	0.53	-0.0
1,263,482	-		GFF1233	0.54	-0.1
1,263,492	+		GFF1233	0.56	+0.2
1,263,492	+		GFF1233	0.56	-0.7
1,263,492	+		GFF1233	0.56	-0.0
1,263,495	-		GFF1233	0.57	-0.3
1,263,497	+		GFF1233	0.57	+0.4
1,263,500	-		GFF1233	0.58	-0.4
1,263,501	+		GFF1233	0.58	+1.4
1,263,505	-		GFF1233	0.58	-0.2
1,263,505	-		GFF1233	0.58	-0.4
1,263,505	-		GFF1233	0.58	-1.3
1,263,508	-		GFF1233	0.59	-1.3
1,263,524	+		GFF1233	0.62	+0.2
1,263,524	+		GFF1233	0.62	-0.6
1,263,524	+		GFF1233	0.62	-2.5
1,263,545	+		GFF1233	0.65	+0.8
1,263,555	+		GFF1233	0.67	+1.1
1,263,650	+		GFF1233	0.83	+1.4
1,263,650	+		GFF1233	0.83	+0.0
1,263,650	+		GFF1233	0.83	+0.9
1,263,650	+		GFF1233	0.83	-2.0
1,263,655	+		GFF1233	0.84	-0.8
1,263,658	-		GFF1233	0.84	+0.1
1,263,658	-		GFF1233	0.84	-0.3
1,263,658	-		GFF1233	0.84	+0.4
1,263,668	-		GFF1233	0.86	-1.5
1,263,673	-		GFF1233	0.87	-1.8
1,263,675	+		GFF1233	0.87	-1.2
1,263,693	-				-0.8
1,263,717	+				-0.7
1,263,740	-				+0.8
1,263,741	-				+0.2
1,263,741	-				+0.6
1,263,741	-				-1.3
1,263,741	-				-1.2
1,263,741	-				-2.0
1,263,741	-				-0.5
1,263,741	-				+0.8
1,263,745	-				-0.0
1,263,755	+				-0.2
1,263,763	-				-0.0
1,263,778	+				-0.2
1,263,786	-				+0.0
1,263,786	-				+1.5
1,263,828	+		GFF1234	0.26	+0.3
1,263,837	-		GFF1234	0.30	+0.1
1,263,837	-		GFF1234	0.30	-0.3
1,263,854	+		GFF1234	0.37	+0.7
1,263,854	+		GFF1234	0.37	+0.3
1,263,863	+		GFF1234	0.40	-0.3
1,263,873	+		GFF1234	0.44	+0.8
1,263,910	+		GFF1234	0.59	+0.3
1,263,910	+		GFF1234	0.59	+0.1
1,263,912	+		GFF1234	0.60	-0.5
1,263,946	+		GFF1234	0.73	+0.3
1,263,966	+		GFF1234	0.82	+0.5
1,263,969	-		GFF1234	0.83	-0.2
1,264,000	+				-0.0
1,264,009	-				+1.2
1,264,014	-				-0.7
1,264,019	+				-1.9
1,264,021	+				-0.8
1,264,021	+				-1.2
1,264,021	+				+0.9
1,264,027	-				-0.6
1,264,027	-				-0.5
1,264,037	+				-1.2
1,264,037	+				-0.5
1,264,046	+				-0.2
1,264,051	+				+1.1
1,264,051	+				+0.0
1,264,056	+				-1.5
1,264,063	+				+0.7
1,264,063	+				+0.0
1,264,090	+				-0.1
1,264,090	+				+1.1
1,264,090	+				+1.0
1,264,095	+				-0.4
1,264,095	+				-0.2
1,264,095	+				-1.8
1,264,095	+				-0.3
1,264,095	+				-0.2
1,264,098	-				-1.9
1,264,098	-				+0.1
1,264,098	-				-0.0
1,264,100	+				-1.3
1,264,100	+				-1.7
1,264,103	-				-0.9
1,264,103	-				-0.9
1,264,103	-				-0.8
1,264,103	-				-0.7
1,264,105	+				+0.7
1,264,108	-				-0.3
1,264,108	-				-0.3
1,264,108	-				-1.7
1,264,108	-				-0.9