Strain Fitness in Sphingobium sp. HT1-2 around GFF1230

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,259,505	-				-1.2
1,259,515	-				+0.4
1,259,555	-				-2.0
1,259,561	-				-0.9
1,259,643	+		GFF1228	0.47	-1.2
1,259,736	-				+0.1
1,259,776	-				-0.9
1,259,781	-				+0.7
1,259,781	-				+0.0
1,259,790	-				-1.2
1,259,794	+				+0.3
1,259,802	-				-3.3
1,259,802	-				-2.5
1,259,819	-				+0.1
1,259,831	-		GFF1229	0.10	-1.5
1,259,833	+		GFF1229	0.11	-1.6
1,259,840	+		GFF1229	0.12	-0.1
1,259,841	-		GFF1229	0.12	-0.3
1,259,858	+		GFF1229	0.14	+0.8
1,259,919	+		GFF1229	0.22	-0.6
1,259,919	+		GFF1229	0.22	-0.3
1,259,919	+		GFF1229	0.22	+0.0
1,259,919	+		GFF1229	0.22	+0.0
1,259,919	+		GFF1229	0.22	-0.6
1,259,919	+		GFF1229	0.22	+0.1
1,259,919	+		GFF1229	0.22	-0.6
1,259,919	+		GFF1229	0.22	-1.6
1,259,919	+		GFF1229	0.22	-0.2
1,259,922	-		GFF1229	0.23	-0.2
1,259,924	+		GFF1229	0.23	-2.3
1,259,924	+		GFF1229	0.23	-2.5
1,259,924	+		GFF1229	0.23	-0.4
1,259,924	+		GFF1229	0.23	-0.0
1,259,927	-		GFF1229	0.23	-0.2
1,259,927	-		GFF1229	0.23	+0.0
1,259,927	-		GFF1229	0.23	-0.1
1,259,927	-		GFF1229	0.23	-0.4
1,259,936	+		GFF1229	0.25	-0.4
1,259,937	-		GFF1229	0.25	-0.6
1,259,944	-		GFF1229	0.26	+0.9
1,259,944	-		GFF1229	0.26	-0.1
1,259,950	+		GFF1229	0.26	+1.5
1,259,951	+		GFF1229	0.27	+0.3
1,259,963	+		GFF1229	0.28	+0.6
1,259,963	+		GFF1229	0.28	-1.6
1,259,963	-		GFF1229	0.28	-1.4
1,259,963	-		GFF1229	0.28	+1.5
1,259,969	-		GFF1229	0.29	+1.0
1,259,971	-		GFF1229	0.29	-1.8
1,260,028	+		GFF1229	0.37	-1.8
1,260,028	+		GFF1229	0.37	+0.2
1,260,028	+		GFF1229	0.37	-0.8
1,260,036	-		GFF1229	0.38	-0.9
1,260,054	-		GFF1229	0.40	+0.1
1,260,071	-		GFF1229	0.43	-0.2
1,260,098	-		GFF1229	0.46	-1.3
1,260,123	+		GFF1229	0.50	-0.1
1,260,131	-		GFF1229	0.51	+0.6
1,260,135	+		GFF1229	0.51	-0.2
1,260,149	-		GFF1229	0.53	-0.1
1,260,152	+		GFF1229	0.54	-0.5
1,260,199	-		GFF1229	0.60	-0.5
1,260,226	-		GFF1229	0.64	+0.5
1,260,233	-		GFF1229	0.65	-0.9
1,260,240	+		GFF1229	0.65	+0.1
1,260,240	+		GFF1229	0.65	-0.6
1,260,240	+		GFF1229	0.65	+0.0
1,260,248	-		GFF1229	0.67	-0.2
1,260,248	-		GFF1229	0.67	+0.5
1,260,248	-		GFF1229	0.67	-0.1
1,260,262	+		GFF1229	0.68	+1.6
1,260,262	+		GFF1229	0.68	-0.9
1,260,262	+		GFF1229	0.68	-0.4
1,260,262	+		GFF1229	0.68	+0.2
1,260,267	+		GFF1229	0.69	-0.5
1,260,270	-		GFF1229	0.69	-1.1
1,260,270	-		GFF1229	0.69	-0.6
1,260,270	-		GFF1229	0.69	+1.2
1,260,270	-		GFF1229	0.69	-2.3
1,260,270	-		GFF1229	0.69	+0.7
1,260,270	-		GFF1229	0.69	-2.3
1,260,270	-		GFF1229	0.69	+1.5
1,260,270	-		GFF1229	0.69	-0.8
1,260,281	-		GFF1229	0.71	-0.7
1,260,303	+		GFF1229	0.74	-1.5
1,260,316	-		GFF1229	0.76	-0.5
1,260,316	-		GFF1229	0.76	-0.7
1,260,326	+		GFF1229	0.77	-1.3
1,260,326	+		GFF1229	0.77	+1.8
1,260,326	+		GFF1229	0.77	-1.6
1,260,329	-		GFF1229	0.77	-0.9
1,260,331	+		GFF1229	0.78	-0.3
1,260,331	+		GFF1229	0.78	-0.2
1,260,331	+		GFF1229	0.78	-1.5
1,260,331	+		GFF1229	0.78	+0.8
1,260,331	+		GFF1229	0.78	-0.8
1,260,331	+		GFF1229	0.78	-0.6
1,260,334	-		GFF1229	0.78	-0.9
1,260,334	-		GFF1229	0.78	+0.9
1,260,334	-		GFF1229	0.78	-1.2
1,260,334	-		GFF1229	0.78	-0.1
1,260,334	-		GFF1229	0.78	+0.3
1,260,336	+		GFF1229	0.78	+0.2
1,260,336	+		GFF1229	0.78	-1.8
1,260,339	-		GFF1229	0.79	+0.5
1,260,339	-		GFF1229	0.79	-0.1
1,260,339	-		GFF1229	0.79	+0.0
1,260,339	-		GFF1229	0.79	-1.9
1,260,339	-		GFF1229	0.79	+0.7
1,260,344	-		GFF1229	0.79	-0.7
1,260,344	-		GFF1229	0.79	+0.9
1,260,344	-		GFF1229	0.79	-0.2
1,260,346	+		GFF1229	0.80	-1.3
1,260,346	+		GFF1229	0.80	-0.6
1,260,353	+		GFF1229	0.81	-1.0
1,260,354	-		GFF1229	0.81	-0.9
1,260,366	+		GFF1229	0.82	+0.2
1,260,387	+		GFF1229	0.85	+0.4
1,260,395	-		GFF1229	0.86	+0.0
1,260,402	+		GFF1229	0.87	-0.8
1,260,445	+				-0.4
1,260,458	+				+1.9
1,260,458	+				-0.5
1,260,458	+				+0.3
1,260,466	-				-0.6
1,260,515	-				-1.2
1,260,535	+				+0.0
1,260,535	+				-1.8
1,260,535	+				-0.0
1,260,535	+				-1.5
1,260,535	+				-1.1
1,260,543	-				+0.1
1,260,543	-				-0.6
1,260,543	-				-1.3
1,260,551	+				-0.0
1,260,569	-				+0.5
1,260,571	+				+0.2
1,260,620	+		GFF1230	0.11	+0.9
1,260,620	+		GFF1230	0.11	+0.2
1,260,620	+		GFF1230	0.11	+0.8
1,260,628	-		GFF1230	0.12	+0.1
1,260,654	+		GFF1230	0.14	-1.5
1,260,660	-		GFF1230	0.15	-0.6
1,260,660	-		GFF1230	0.15	-0.5
1,260,662	-		GFF1230	0.15	-1.5
1,260,669	+		GFF1230	0.16	-1.0
1,260,682	+		GFF1230	0.17	+0.2
1,260,682	-		GFF1230	0.17	+0.4
1,260,682	-		GFF1230	0.17	-0.6
1,260,718	+		GFF1230	0.20	+0.2
1,260,718	+		GFF1230	0.20	+0.8
1,260,719	+		GFF1230	0.20	+1.3
1,260,726	-		GFF1230	0.21	-0.8
1,260,727	+		GFF1230	0.21	-0.3
1,260,729	+		GFF1230	0.21	-0.8
1,260,729	+		GFF1230	0.21	-1.7
1,260,729	+		GFF1230	0.21	+0.1
1,260,735	-		GFF1230	0.22	-1.6
1,260,737	-		GFF1230	0.22	-1.5
1,260,737	-		GFF1230	0.22	+0.2
1,260,737	-		GFF1230	0.22	+1.5
1,260,750	+		GFF1230	0.23	-1.8
1,260,763	+		GFF1230	0.25	-1.9
1,260,763	+		GFF1230	0.25	-2.0
1,260,765	+		GFF1230	0.25	-1.7
1,260,765	+		GFF1230	0.25	-0.4
1,260,771	-		GFF1230	0.25	-0.6
1,260,771	-		GFF1230	0.25	-0.3
1,260,771	-		GFF1230	0.25	-0.1
1,260,771	-		GFF1230	0.25	+0.1
1,260,771	-		GFF1230	0.25	-0.3
1,260,773	-		GFF1230	0.26	-0.1
1,260,773	-		GFF1230	0.26	-0.7
1,260,776	+		GFF1230	0.26	-2.0
1,260,783	-		GFF1230	0.27	+1.2
1,260,793	+		GFF1230	0.28	-1.1
1,260,796	-		GFF1230	0.28	+0.3
1,260,819	+		GFF1230	0.30	+0.2
1,260,820	+		GFF1230	0.30	+0.7
1,260,834	-		GFF1230	0.32	-1.1
1,260,842	-		GFF1230	0.32	-0.8
1,260,870	+		GFF1230	0.35	+0.0
1,260,878	-		GFF1230	0.36	-0.5
1,260,888	+		GFF1230	0.37	-1.8
1,260,896	-		GFF1230	0.37	-0.3
1,260,896	-		GFF1230	0.37	-0.9
1,260,921	+		GFF1230	0.40	-1.6
1,260,921	+		GFF1230	0.40	+1.3
1,260,921	+		GFF1230	0.40	+0.1
1,260,929	-		GFF1230	0.41	-0.6
1,260,929	-		GFF1230	0.41	-0.4
1,260,929	-		GFF1230	0.41	-2.2
1,260,939	+		GFF1230	0.42	+0.1
1,260,940	+		GFF1230	0.42	-0.6
1,260,947	-		GFF1230	0.42	-0.6
1,260,947	-		GFF1230	0.42	-0.5
1,261,011	-		GFF1230	0.48	-0.8
1,261,011	-		GFF1230	0.48	+1.8
1,261,021	-		GFF1230	0.49	+0.1
1,261,026	+		GFF1230	0.50	+0.4
1,261,039	+		GFF1230	0.51	-1.3
1,261,051	+		GFF1230	0.52	-2.0
1,261,053	+		GFF1230	0.52	+0.7
1,261,059	+		GFF1230	0.53	-0.5
1,261,059	-		GFF1230	0.53	+0.0
1,261,064	+		GFF1230	0.54	+0.3
1,261,064	+		GFF1230	0.54	-0.8
1,261,064	+		GFF1230	0.54	-0.9
1,261,064	+		GFF1230	0.54	+1.0
1,261,064	+		GFF1230	0.54	-1.2
1,261,069	+		GFF1230	0.54	-0.6
1,261,072	-		GFF1230	0.54	+1.0
1,261,072	-		GFF1230	0.54	+0.2
1,261,072	-		GFF1230	0.54	+0.9
1,261,072	-		GFF1230	0.54	-1.1
1,261,072	-		GFF1230	0.54	-2.4
1,261,072	-		GFF1230	0.54	+0.4
1,261,072	-		GFF1230	0.54	-0.7
1,261,072	-		GFF1230	0.54	-0.4
1,261,072	-		GFF1230	0.54	-0.9
1,261,077	-		GFF1230	0.55	-2.1
1,261,077	-		GFF1230	0.55	-0.0
1,261,078	+		GFF1230	0.55	-1.3
1,261,083	+		GFF1230	0.55	+0.1
1,261,083	+		GFF1230	0.55	-0.4
1,261,083	+		GFF1230	0.55	+1.1
1,261,083	+		GFF1230	0.55	-0.3
1,261,083	+		GFF1230	0.55	+0.4
1,261,083	+		GFF1230	0.55	+0.7
1,261,083	+		GFF1230	0.55	-0.0
1,261,084	+		GFF1230	0.55	-0.0
1,261,091	-		GFF1230	0.56	-0.7
1,261,091	-		GFF1230	0.56	-0.9
1,261,091	-		GFF1230	0.56	-0.3
1,261,092	-		GFF1230	0.56	-0.4
1,261,092	-		GFF1230	0.56	-0.3
1,261,100	+		GFF1230	0.57	+1.6
1,261,100	+		GFF1230	0.57	+1.2
1,261,100	+		GFF1230	0.57	-1.9
1,261,100	+		GFF1230	0.57	-1.5
1,261,100	+		GFF1230	0.57	+1.1
1,261,100	+		GFF1230	0.57	-0.0
1,261,108	-		GFF1230	0.58	-1.9
1,261,108	-		GFF1230	0.58	-0.7
1,261,108	-		GFF1230	0.58	-0.6
1,261,108	-		GFF1230	0.58	-0.6
1,261,113	-		GFF1230	0.58	+0.2
1,261,113	-		GFF1230	0.58	+0.2
1,261,117	+		GFF1230	0.59	+0.8
1,261,119	+		GFF1230	0.59	-0.5
1,261,136	+		GFF1230	0.60	+1.5
1,261,144	-		GFF1230	0.61	-0.6
1,261,144	-		GFF1230	0.61	+0.5
1,261,188	+		GFF1230	0.65	-0.4
1,261,212	+		GFF1230	0.68	+0.1
1,261,227	+		GFF1230	0.69	+0.4
1,261,232	+		GFF1230	0.70	-2.5
1,261,235	-		GFF1230	0.70	-2.0
1,261,240	-		GFF1230	0.70	-0.0
1,261,242	+		GFF1230	0.71	+0.5
1,261,242	+		GFF1230	0.71	-0.3
1,261,242	+		GFF1230	0.71	+0.3
1,261,242	+		GFF1230	0.71	-0.5
1,261,242	+		GFF1230	0.71	-0.0
1,261,242	+		GFF1230	0.71	-1.1
1,261,242	+		GFF1230	0.71	-1.2
1,261,242	+		GFF1230	0.71	-0.3
1,261,242	+		GFF1230	0.71	+0.7
1,261,242	+		GFF1230	0.71	+1.1
1,261,245	-		GFF1230	0.71	+0.0
1,261,247	+		GFF1230	0.71	-0.1
1,261,248	+		GFF1230	0.71	-0.7
1,261,250	-		GFF1230	0.71	-0.9
1,261,250	-		GFF1230	0.71	+1.1
1,261,250	-		GFF1230	0.71	-1.5
1,261,250	-		GFF1230	0.71	+0.1
1,261,250	-		GFF1230	0.71	-0.2
1,261,250	-		GFF1230	0.71	+1.3
1,261,250	-		GFF1230	0.71	+0.2
1,261,261	+		GFF1230	0.72	-1.6
1,261,271	+		GFF1230	0.73	-0.8
1,261,274	-		GFF1230	0.74	-0.2
1,261,306	+		GFF1230	0.77	+0.3
1,261,330	+		GFF1230	0.79	-1.8
1,261,338	-		GFF1230	0.80	+1.1
1,261,364	-		GFF1230	0.82	+0.1
1,261,369	-		GFF1230	0.83	+1.2
1,261,369	-		GFF1230	0.83	-2.1
1,261,389	+		GFF1230	0.85	+0.7
1,261,397	+		GFF1230	0.85	+0.1
1,261,449	+				-0.3
1,261,449	+				-0.3
1,261,449	+				-0.6
1,261,450	+				-0.0
1,261,450	+				-0.5
1,261,456	+				+0.3
1,261,456	+				-0.6
1,261,457	-				-1.5
1,261,457	-				-0.3
1,261,457	-				+0.9
1,261,458	-				-3.3
1,261,458	-				-0.4
1,261,479	-				+0.7
1,261,483	-				+1.7
1,261,496	+				-1.0
1,261,496	+				-0.7
1,261,496	+				-0.3
1,261,496	+				-0.1
1,261,501	+				+0.7
1,261,502	+				+0.1
1,261,502	+				-0.1
1,261,504	-				-1.9
1,261,510	-				+0.8
1,261,510	-				-0.4
1,261,510	-				-0.1
1,261,513	+				+0.0
1,261,513	+				-0.9
1,261,533	+				-0.5
1,261,550	-				+0.4
1,261,550	-				-0.2
1,261,550	-				-1.0
1,261,552	+				-0.5
1,261,552	+				-2.1
1,261,557	+				-0.3
1,261,560	-				-1.2
1,261,560	-				+0.8
1,261,562	+				+0.7
1,261,562	+				+0.0
1,261,562	+				+1.5
1,261,565	-				+0.9
1,261,601	+				-1.5
1,261,606	+				-1.1
1,261,609	-				-0.9
1,261,619	-				+0.5
1,261,641	+				-0.6
1,261,641	+				-0.6
1,261,644	-				-1.5
1,261,667	-		GFF1231	0.10	+0.4
1,261,679	+		GFF1231	0.12	-1.0
1,261,720	+		GFF1231	0.15	-0.6
1,261,727	+		GFF1231	0.16	-1.2
1,261,727	+		GFF1231	0.16	-0.8
1,261,727	+		GFF1231	0.16	-0.6
1,261,727	+		GFF1231	0.16	-0.4
1,261,727	+		GFF1231	0.16	-1.5
1,261,727	+		GFF1231	0.16	+0.0
1,261,727	+		GFF1231	0.16	-0.9
1,261,727	+		GFF1231	0.16	+0.2
1,261,727	+		GFF1231	0.16	-0.2
1,261,727	+		GFF1231	0.16	-2.3
1,261,727	+		GFF1231	0.16	-0.0
1,261,735	-		GFF1231	0.16	-0.2
1,261,754	-		GFF1231	0.18	-0.2
1,261,759	-		GFF1231	0.19	-1.5
1,261,759	-		GFF1231	0.19	-0.9
1,261,759	-		GFF1231	0.19	-1.3
1,261,778	-		GFF1231	0.20	-1.6
1,261,778	-		GFF1231	0.20	-0.3
1,261,792	+		GFF1231	0.22	+1.1
1,261,792	+		GFF1231	0.22	-1.2
1,261,797	+		GFF1231	0.22	+0.6
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