Strain Fitness in Sphingobium sp. HT1-2 around GFF1210

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,229,156	-		GFF1208	0.90	+0.7
1,229,158	+				+0.9
1,229,162	-				-0.5
1,229,179	-				+0.9
1,229,193	-				-0.7
1,229,214	+				-1.9
1,229,250	+				+0.1
1,229,250	+				+1.1
1,229,258	-				-0.5
1,229,258	-				-0.6
1,229,272	+				-0.7
1,229,302	-				-0.1
1,229,304	+				-0.9
1,229,306	+				-0.5
1,229,306	+				-0.1
1,229,312	-				-0.1
1,229,312	-				-0.8
1,229,312	-				-0.8
1,229,314	-				-0.2
1,229,316	+				+0.1
1,229,316	+				-0.5
1,229,316	+				+0.4
1,229,316	+				-0.8
1,229,316	+				-0.7
1,229,316	+				-1.0
1,229,316	+				+1.1
1,229,316	+				-0.9
1,229,316	+				-2.4
1,229,316	+				+0.6
1,229,316	+				-0.4
1,229,318	+				+0.0
1,229,323	+				-1.4
1,229,324	-				+0.7
1,229,324	-				-1.5
1,229,324	-				+0.9
1,229,324	-				-0.2
1,229,324	-				-0.9
1,229,324	-				-0.6
1,229,324	-				-0.2
1,229,324	-				+0.5
1,229,324	-				-3.3
1,229,324	-				+0.8
1,229,324	-				-1.2
1,229,324	-				-0.4
1,229,324	-				-2.5
1,229,324	-				-0.5
1,229,326	-				+0.1
1,229,326	-				-0.4
1,229,331	-				-2.4
1,229,339	+				-1.0
1,229,339	+				-2.8
1,229,339	+				+0.2
1,229,339	+				-1.4
1,229,358	+				-0.9
1,229,358	-				+0.1
1,229,363	+				-0.5
1,229,363	+				-2.2
1,229,371	-				-0.5
1,229,371	-				-0.9
1,229,372	-				+0.2
1,229,407	-				-1.9
1,229,409	+				-1.9
1,229,412	-				-0.9
1,229,425	-				+0.3
1,229,425	-				-0.2
1,229,438	+				-0.4
1,229,463	+				+0.9
1,229,463	+				-0.9
1,229,482	+				-0.5
1,229,497	-				-1.3
1,229,542	+		GFF1209	0.13	-0.6
1,229,542	+		GFF1209	0.13	-0.9
1,229,570	-		GFF1209	0.17	+0.9
1,229,590	-		GFF1209	0.20	+0.3
1,229,595	-		GFF1209	0.21	-0.8
1,229,597	+		GFF1209	0.21	-1.4
1,229,605	-		GFF1209	0.22	-0.0
1,229,609	-		GFF1209	0.23	+0.6
1,229,610	-		GFF1209	0.23	-1.1
1,229,617	-		GFF1209	0.24	+0.8
1,229,645	+		GFF1209	0.28	-0.7
1,229,645	+		GFF1209	0.28	-1.5
1,229,645	+		GFF1209	0.28	-2.7
1,229,645	+		GFF1209	0.28	+0.2
1,229,645	+		GFF1209	0.28	-0.5
1,229,645	+		GFF1209	0.28	+0.5
1,229,645	+		GFF1209	0.28	+0.1
1,229,645	+		GFF1209	0.28	-0.9
1,229,645	+		GFF1209	0.28	-1.6
1,229,645	+		GFF1209	0.28	-0.2
1,229,645	+		GFF1209	0.28	-1.1
1,229,645	+		GFF1209	0.28	-0.8
1,229,645	+		GFF1209	0.28	-1.2
1,229,645	+		GFF1209	0.28	-1.2
1,229,645	+		GFF1209	0.28	+0.6
1,229,650	+		GFF1209	0.28	-1.5
1,229,650	+		GFF1209	0.28	-0.6
1,229,653	-		GFF1209	0.29	-1.4
1,229,653	-		GFF1209	0.29	+0.4
1,229,653	-		GFF1209	0.29	+0.2
1,229,653	-		GFF1209	0.29	+0.8
1,229,653	-		GFF1209	0.29	+0.1
1,229,653	-		GFF1209	0.29	-2.2
1,229,653	-		GFF1209	0.29	+0.3
1,229,653	-		GFF1209	0.29	-1.2
1,229,659	-		GFF1209	0.30	+1.1
1,229,665	-		GFF1209	0.30	-1.5
1,229,679	+		GFF1209	0.32	+0.1
1,229,687	-		GFF1209	0.33	-0.5
1,229,804	+		GFF1209	0.50	-1.1
1,229,804	+		GFF1209	0.50	-0.1
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.5
1,229,812	-		GFF1209	0.51	-2.3
1,229,853	+		GFF1209	0.57	-0.2
1,229,868	+		GFF1209	0.59	-0.3
1,229,876	+		GFF1209	0.60	-1.2
1,229,876	-		GFF1209	0.60	-0.4
1,229,904	+		GFF1209	0.64	+0.5
1,229,913	+		GFF1209	0.65	-2.2
1,229,913	+		GFF1209	0.65	-0.4
1,229,913	+		GFF1209	0.65	-1.4
1,229,914	+		GFF1209	0.65	-0.8
1,229,914	+		GFF1209	0.65	-1.3
1,229,918	+		GFF1209	0.66	-0.2
1,229,921	-		GFF1209	0.66	+0.2
1,229,923	+		GFF1209	0.67	-1.5
1,229,931	-		GFF1209	0.68	-0.7
1,229,931	-		GFF1209	0.68	-1.0
1,229,931	-		GFF1209	0.68	+1.4
1,229,931	-		GFF1209	0.68	-1.8
1,229,931	-		GFF1209	0.68	+0.2
1,229,941	-		GFF1209	0.69	+0.5
1,229,950	-		GFF1209	0.70	-2.8
1,229,971	-		GFF1209	0.73	-0.6
1,229,980	-		GFF1209	0.75	+0.8
1,229,999	-		GFF1209	0.77	-0.1
1,230,030	-		GFF1209	0.82	-0.3
1,230,030	-		GFF1209	0.82	+0.8
1,230,033	+		GFF1209	0.82	-2.0
1,230,037	-		GFF1209	0.83	+0.2
1,230,041	+		GFF1209	0.83	-1.9
1,230,043	+		GFF1209	0.84	-1.1
1,230,043	+		GFF1209	0.84	+0.0
1,230,044	+		GFF1209	0.84	+1.1
1,230,044	+		GFF1209	0.84	+0.8
1,230,051	-		GFF1209	0.85	-0.0
1,230,051	-		GFF1209	0.85	-0.6
1,230,051	-		GFF1209	0.85	+0.4
1,230,051	-		GFF1209	0.85	-0.6
1,230,051	-		GFF1209	0.85	+0.3
1,230,051	-		GFF1209	0.85	+0.6
1,230,060	+		GFF1209	0.86	+0.0
1,230,071	+		GFF1209	0.87	+0.0
1,230,090	+				-0.8
1,230,108	+				-1.9
1,230,109	+				+0.9
1,230,136	-				-0.5
1,230,153	+				-0.7
1,230,178	-				+1.2
1,230,234	-				-1.3
1,230,257	-				-0.8
1,230,259	+				-1.0
1,230,291	-				+1.1
1,230,300	-		GFF1210	0.11	+0.7
1,230,328	+		GFF1210	0.13	-1.1
1,230,338	+		GFF1210	0.13	-0.4
1,230,345	+		GFF1210	0.14	-1.6
1,230,346	-		GFF1210	0.14	-2.5
1,230,412	+		GFF1210	0.19	+0.6
1,230,422	+		GFF1210	0.20	+0.6
1,230,430	+		GFF1210	0.20	-0.2
1,230,453	-		GFF1210	0.22	+0.1
1,230,499	-		GFF1210	0.25	+1.4
1,230,503	+		GFF1210	0.26	+0.3
1,230,503	+		GFF1210	0.26	-0.7
1,230,503	+		GFF1210	0.26	-0.6
1,230,511	-		GFF1210	0.26	+0.7
1,230,511	-		GFF1210	0.26	+0.5
1,230,516	-		GFF1210	0.27	-1.9
1,230,567	+		GFF1210	0.30	-0.8
1,230,594	+		GFF1210	0.32	-0.3
1,230,635	-		GFF1210	0.35	+0.1
1,230,656	-		GFF1210	0.37	+0.2
1,230,725	-		GFF1210	0.42	-0.5
1,230,745	-		GFF1210	0.43	-1.5
1,230,841	-		GFF1210	0.51	+0.1
1,230,849	-		GFF1210	0.51	+0.5
1,230,865	+		GFF1210	0.52	-0.4
1,230,881	-		GFF1210	0.53	+0.4
1,230,894	+		GFF1210	0.54	-2.4
1,230,894	+		GFF1210	0.54	-0.3
1,230,894	+		GFF1210	0.54	+0.5
1,230,897	-		GFF1210	0.55	-1.2
1,230,899	-		GFF1210	0.55	+1.3
1,230,907	-		GFF1210	0.55	+0.9
1,230,916	+		GFF1210	0.56	-0.9
1,230,924	-		GFF1210	0.57	+0.2
1,230,924	-		GFF1210	0.57	-0.5
1,230,962	+		GFF1210	0.59	-2.1
1,230,962	+		GFF1210	0.59	-0.2
1,231,044	-		GFF1210	0.65	+0.4
1,231,044	-		GFF1210	0.65	+0.7
1,231,055	+		GFF1210	0.66	+0.8
1,231,055	+		GFF1210	0.66	-1.4
1,231,056	+		GFF1210	0.66	-1.2
1,231,115	+		GFF1210	0.71	-1.2
1,231,115	+		GFF1210	0.71	-0.4
1,231,123	-		GFF1210	0.71	+0.9
1,231,123	-		GFF1210	0.71	-1.2
1,231,198	+		GFF1210	0.77	-1.1
1,231,198	+		GFF1210	0.77	-1.2
1,231,198	+		GFF1210	0.77	-1.9
1,231,203	+		GFF1210	0.77	+1.1
1,231,203	+		GFF1210	0.77	+0.1
1,231,203	+		GFF1210	0.77	-1.5
1,231,203	+		GFF1210	0.77	-2.5
1,231,203	+		GFF1210	0.77	+1.1
1,231,203	+		GFF1210	0.77	+0.2
1,231,203	+		GFF1210	0.77	-1.2
1,231,203	+		GFF1210	0.77	-1.1
1,231,203	+		GFF1210	0.77	-1.6
1,231,206	-		GFF1210	0.77	-0.6
1,231,206	-		GFF1210	0.77	+0.1
1,231,206	-		GFF1210	0.77	-0.7
1,231,206	-		GFF1210	0.77	+0.4
1,231,206	-		GFF1210	0.77	-0.0
1,231,211	-		GFF1210	0.78	-0.2
1,231,211	-		GFF1210	0.78	-0.9
1,231,211	-		GFF1210	0.78	+0.3
1,231,211	-		GFF1210	0.78	+1.0
1,231,211	-		GFF1210	0.78	-0.7
1,231,211	-		GFF1210	0.78	+0.4
1,231,233	-		GFF1210	0.79	-0.3
1,231,234	+		GFF1210	0.79	-0.2
1,231,267	-		GFF1210	0.82	+0.0
1,231,305	+		GFF1210	0.85	+0.8
1,231,324	-		GFF1210	0.86	-0.2
1,231,324	-		GFF1210	0.86	+0.5
1,231,337	+		GFF1210	0.87	-0.5
1,231,355	-		GFF1210	0.88	+0.1
1,231,355	-		GFF1210	0.88	-1.8
1,231,359	-		GFF1210	0.89	-0.8
1,231,362	+		GFF1210	0.89	-0.1
1,231,378	-				+0.1
1,231,403	+				-0.6
1,231,410	+				-1.2
1,231,482	+				-1.8
1,231,507	+				+0.2
1,231,507	+				+0.1
1,231,515	+				+0.0
1,231,515	-				-0.5
1,231,515	-				-0.4
1,231,515	-				-0.7
1,231,541	-				-1.2
1,231,563	+				+1.2
1,231,573	+				-2.0
1,231,582	+				+0.1
1,231,584	+				+0.3
1,231,590	-				-0.2
1,231,590	-				-1.3
1,231,592	-				-0.3
1,231,622	+				-1.5
1,231,622	+				-0.7
1,231,623	+				-0.2
1,231,630	-				+0.3
1,231,630	-				-1.1
1,231,630	-				+0.2
1,231,659	+				+0.6
1,231,674	+				-2.2
1,231,674	+				-1.0
1,231,674	+				-2.1
1,231,674	+				-0.9
1,231,674	+				+0.6
1,231,674	+				-0.4
1,231,674	+				-0.7
1,231,674	+				+1.5
1,231,682	-				-0.6
1,231,682	-				-0.8
1,231,682	-				-2.1
1,231,682	-				-0.9
1,231,682	-				+0.1
1,231,682	-				-1.0
1,231,682	-				-1.2
1,231,682	-				+1.4
1,231,686	-				+1.0
1,231,725	-		GFF1211	0.10	-0.9
1,231,762	-		GFF1211	0.13	-1.1
1,231,763	-		GFF1211	0.13	-0.3
1,231,774	-		GFF1211	0.14	-3.0
1,231,783	+		GFF1211	0.15	-0.5
1,231,786	-		GFF1211	0.15	+1.6
1,231,789	+		GFF1211	0.16	+0.1
1,231,789	+		GFF1211	0.16	-0.5
1,231,789	+		GFF1211	0.16	-0.6
1,231,791	-		GFF1211	0.16	+0.6
1,231,797	-		GFF1211	0.16	-2.6
1,231,815	+		GFF1211	0.18	+0.1
1,231,815	+		GFF1211	0.18	-1.8
1,231,815	+		GFF1211	0.18	+1.4
1,231,815	+		GFF1211	0.18	-1.3
1,231,815	+		GFF1211	0.18	-0.1
1,231,815	+		GFF1211	0.18	+0.4
1,231,816	+		GFF1211	0.18	-0.1
1,231,821	-		GFF1211	0.18	+0.5
1,231,823	-		GFF1211	0.18	+0.6
1,231,854	-		GFF1211	0.21	+0.6
1,231,854	-		GFF1211	0.21	+0.5
1,231,873	+		GFF1211	0.22	-1.4
1,231,873	+		GFF1211	0.22	+0.5
1,231,881	-		GFF1211	0.23	-0.5
1,231,881	-		GFF1211	0.23	-0.5
1,231,916	-		GFF1211	0.26	+0.6
1,231,942	+		GFF1211	0.28	+0.1
1,231,942	+		GFF1211	0.28	-1.4
1,231,950	-		GFF1211	0.29	-1.2
1,231,957	+		GFF1211	0.29	-1.9
1,231,960	+		GFF1211	0.30	-2.0
1,231,961	+		GFF1211	0.30	+0.8
1,231,988	-		GFF1211	0.32	-0.3
1,232,002	-		GFF1211	0.33	+0.0
1,232,007	-		GFF1211	0.34	+0.6
1,232,010	-		GFF1211	0.34	+0.1
1,232,012	+		GFF1211	0.34	-1.8
1,232,019	-		GFF1211	0.35	-1.3
1,232,020	-		GFF1211	0.35	+0.1
1,232,029	+		GFF1211	0.35	-0.1
1,232,041	+		GFF1211	0.36	-1.0
1,232,102	-		GFF1211	0.41	+0.7
1,232,122	+		GFF1211	0.43	+1.5
1,232,122	+		GFF1211	0.43	+1.1
1,232,122	+		GFF1211	0.43	+1.0
1,232,130	-		GFF1211	0.44	-0.8
1,232,151	-		GFF1211	0.46	-0.2
1,232,162	-		GFF1211	0.46	-0.2
1,232,184	+		GFF1211	0.48	-1.3
1,232,205	+		GFF1211	0.50	-0.2
1,232,205	+		GFF1211	0.50	-0.5
1,232,205	+		GFF1211	0.50	+0.2
1,232,213	-		GFF1211	0.51	-1.2
1,232,213	-		GFF1211	0.51	+0.5
1,232,244	+		GFF1211	0.53	+1.6
1,232,251	+		GFF1211	0.54	+1.0
1,232,276	+		GFF1211	0.56	-0.4
1,232,276	+		GFF1211	0.56	-2.0
1,232,279	+		GFF1211	0.56	-1.2
1,232,279	-		GFF1211	0.56	-1.1
1,232,287	-		GFF1211	0.57	+0.8
1,232,304	-		GFF1211	0.58	-0.7
1,232,315	+		GFF1211	0.59	+0.4
1,232,315	+		GFF1211	0.59	-0.6
1,232,328	-		GFF1211	0.60	-2.6
1,232,330	+		GFF1211	0.60	+0.7
1,232,331	-		GFF1211	0.60	-0.5
1,232,338	-		GFF1211	0.61	-2.5
1,232,350	-		GFF1211	0.62	-1.7
1,232,367	-		GFF1211	0.63	+0.1
1,232,378	+		GFF1211	0.64	+0.2
1,232,421	+		GFF1211	0.68	-0.3
1,232,421	+		GFF1211	0.68	+0.4
1,232,426	+		GFF1211	0.68	-1.7
1,232,442	+		GFF1211	0.70	-0.2
1,232,442	+		GFF1211	0.70	-0.5
1,232,450	-		GFF1211	0.70	-2.1
1,232,450	-		GFF1211	0.70	-0.1
1,232,505	+		GFF1211	0.75	+0.1
1,232,505	+		GFF1211	0.75	-0.6