Strain Fitness in Sphingobium sp. HT1-2 around GFF1209

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,228,452	-		GFF1208	0.47	+0.3
1,228,452	-		GFF1208	0.47	-1.0
1,228,452	-		GFF1208	0.47	-0.6
1,228,452	-		GFF1208	0.47	-0.1
1,228,452	-		GFF1208	0.47	+0.5
1,228,452	-		GFF1208	0.47	-0.4
1,228,452	-		GFF1208	0.47	+1.5
1,228,452	-		GFF1208	0.47	-1.2
1,228,452	-		GFF1208	0.47	-0.2
1,228,452	-		GFF1208	0.47	+0.5
1,228,452	-		GFF1208	0.47	-1.9
1,228,452	-		GFF1208	0.47	+0.6
1,228,452	-		GFF1208	0.47	-2.3
1,228,452	-		GFF1208	0.47	+0.4
1,228,452	-		GFF1208	0.47	-0.4
1,228,452	-		GFF1208	0.47	-1.2
1,228,452	-		GFF1208	0.47	+0.2
1,228,452	-		GFF1208	0.47	-0.2
1,228,452	-		GFF1208	0.47	+0.0
1,228,452	-		GFF1208	0.47	-0.4
1,228,452	-		GFF1208	0.47	-1.9
1,228,452	-		GFF1208	0.47	-1.1
1,228,452	-		GFF1208	0.47	-0.1
1,228,452	-		GFF1208	0.47	-0.4
1,228,452	-		GFF1208	0.47	-1.2
1,228,452	-		GFF1208	0.47	-0.1
1,228,452	-		GFF1208	0.47	-0.7
1,228,452	-		GFF1208	0.47	-0.3
1,228,452	-		GFF1208	0.47	-1.6
1,228,452	-		GFF1208	0.47	-1.5
1,228,452	-		GFF1208	0.47	-1.5
1,228,452	-		GFF1208	0.47	-1.4
1,228,452	-		GFF1208	0.47	-0.7
1,228,452	-		GFF1208	0.47	-1.4
1,228,452	-		GFF1208	0.47	-0.4
1,228,452	-		GFF1208	0.47	+0.3
1,228,452	-		GFF1208	0.47	-0.7
1,228,452	-		GFF1208	0.47	-2.0
1,228,452	-		GFF1208	0.47	-2.2
1,228,452	-		GFF1208	0.47	-0.5
1,228,452	-		GFF1208	0.47	-1.5
1,228,452	-		GFF1208	0.47	+0.5
1,228,452	-		GFF1208	0.47	+0.3
1,228,454	+		GFF1208	0.47	-0.5
1,228,454	+		GFF1208	0.47	-0.8
1,228,454	+		GFF1208	0.47	+0.3
1,228,454	+		GFF1208	0.47	+0.8
1,228,454	+		GFF1208	0.47	+0.0
1,228,454	+		GFF1208	0.47	-0.4
1,228,454	+		GFF1208	0.47	-1.0
1,228,461	+		GFF1208	0.48	+0.1
1,228,462	+		GFF1208	0.48	+0.4
1,228,466	+		GFF1208	0.48	-1.0
1,228,466	+		GFF1208	0.48	+0.6
1,228,466	+		GFF1208	0.48	-0.3
1,228,466	+		GFF1208	0.48	+0.7
1,228,474	-		GFF1208	0.48	+0.2
1,228,474	-		GFF1208	0.48	-0.3
1,228,479	-		GFF1208	0.49	+0.1
1,228,490	+		GFF1208	0.49	-0.5
1,228,498	-		GFF1208	0.50	-1.1
1,228,498	-		GFF1208	0.50	+0.8
1,228,504	+		GFF1208	0.50	-2.0
1,228,504	+		GFF1208	0.50	-2.4
1,228,507	-		GFF1208	0.50	+0.5
1,228,507	-		GFF1208	0.50	-0.9
1,228,512	-		GFF1208	0.51	+0.6
1,228,512	-		GFF1208	0.51	+0.4
1,228,512	-		GFF1208	0.51	-0.7
1,228,520	-		GFF1208	0.51	+0.4
1,228,577	-		GFF1208	0.55	-0.1
1,228,590	+		GFF1208	0.55	-2.1
1,228,595	+		GFF1208	0.56	-0.2
1,228,595	+		GFF1208	0.56	-0.2
1,228,605	+		GFF1208	0.56	+0.0
1,228,608	+		GFF1208	0.57	+0.5
1,228,608	-		GFF1208	0.57	+0.9
1,228,615	+		GFF1208	0.57	+0.5
1,228,615	+		GFF1208	0.57	-0.9
1,228,615	+		GFF1208	0.57	-0.1
1,228,615	+		GFF1208	0.57	+1.0
1,228,623	-		GFF1208	0.57	-0.0
1,228,623	-		GFF1208	0.57	-0.1
1,228,623	-		GFF1208	0.57	-0.8
1,228,623	-		GFF1208	0.57	-1.8
1,228,623	-		GFF1208	0.57	+0.2
1,228,637	-		GFF1208	0.58	-0.7
1,228,637	-		GFF1208	0.58	-0.8
1,228,640	+		GFF1208	0.59	+0.4
1,228,640	+		GFF1208	0.59	-0.5
1,228,646	+		GFF1208	0.59	+1.1
1,228,646	+		GFF1208	0.59	-2.2
1,228,648	-		GFF1208	0.59	-1.4
1,228,658	-		GFF1208	0.60	-0.1
1,228,658	-		GFF1208	0.60	-0.0
1,228,658	-		GFF1208	0.60	-1.5
1,228,658	-		GFF1208	0.60	+0.1
1,228,659	-		GFF1208	0.60	-1.2
1,228,669	+		GFF1208	0.60	-0.5
1,228,676	-		GFF1208	0.61	-1.7
1,228,686	-		GFF1208	0.61	-2.2
1,228,710	+		GFF1208	0.63	+0.1
1,228,718	-		GFF1208	0.63	-1.7
1,228,727	-		GFF1208	0.64	-1.2
1,228,727	-		GFF1208	0.64	-0.7
1,228,728	-		GFF1208	0.64	-0.2
1,228,748	+		GFF1208	0.65	+0.2
1,228,748	+		GFF1208	0.65	-0.4
1,228,748	+		GFF1208	0.65	-1.7
1,228,777	+		GFF1208	0.67	+0.1
1,228,797	-		GFF1208	0.68	+0.2
1,228,797	-		GFF1208	0.68	+0.1
1,228,803	+		GFF1208	0.68	-1.2
1,228,873	+		GFF1208	0.73	-0.8
1,228,882	+		GFF1208	0.73	+1.1
1,228,882	+		GFF1208	0.73	+0.2
1,228,906	+		GFF1208	0.75	-0.2
1,228,915	+		GFF1208	0.75	-0.1
1,228,915	+		GFF1208	0.75	-1.2
1,228,915	+		GFF1208	0.75	+0.0
1,228,915	+		GFF1208	0.75	-1.4
1,228,915	+		GFF1208	0.75	+0.6
1,228,923	-		GFF1208	0.76	-1.9
1,228,923	-		GFF1208	0.76	+0.4
1,228,923	-		GFF1208	0.76	-0.7
1,228,936	-		GFF1208	0.77	-0.6
1,228,936	-		GFF1208	0.77	-0.4
1,228,939	-		GFF1208	0.77	-0.0
1,228,941	-		GFF1208	0.77	-0.0
1,228,964	+		GFF1208	0.78	-1.6
1,228,964	+		GFF1208	0.78	-2.3
1,228,964	+		GFF1208	0.78	+0.3
1,228,965	+		GFF1208	0.78	-0.2
1,228,965	+		GFF1208	0.78	-0.6
1,228,968	-		GFF1208	0.78	-0.2
1,229,001	+		GFF1208	0.80	-0.4
1,229,014	-		GFF1208	0.81	-0.6
1,229,014	-		GFF1208	0.81	+0.8
1,229,014	-		GFF1208	0.81	-0.2
1,229,024	+		GFF1208	0.82	-2.4
1,229,024	-		GFF1208	0.82	+1.0
1,229,029	-		GFF1208	0.82	+0.9
1,229,034	+		GFF1208	0.82	+1.8
1,229,034	+		GFF1208	0.82	+0.0
1,229,034	+		GFF1208	0.82	-0.2
1,229,042	-		GFF1208	0.83	-0.8
1,229,042	-		GFF1208	0.83	-0.2
1,229,042	-		GFF1208	0.83	-0.6
1,229,042	-		GFF1208	0.83	-0.3
1,229,060	+		GFF1208	0.84	-1.8
1,229,074	-		GFF1208	0.85	+0.8
1,229,076	+		GFF1208	0.85	-0.7
1,229,084	-		GFF1208	0.85	+1.0
1,229,090	-		GFF1208	0.86	+0.8
1,229,120	-		GFF1208	0.88	-0.3
1,229,120	-		GFF1208	0.88	+0.5
1,229,132	+		GFF1208	0.88	-1.0
1,229,132	+		GFF1208	0.88	+0.7
1,229,140	-		GFF1208	0.89	-0.1
1,229,156	-		GFF1208	0.90	+0.7
1,229,158	+				+0.9
1,229,162	-				-0.5
1,229,179	-				+0.9
1,229,193	-				-0.7
1,229,214	+				-1.9
1,229,250	+				+0.1
1,229,250	+				+1.1
1,229,258	-				-0.5
1,229,258	-				-0.6
1,229,272	+				-0.7
1,229,302	-				-0.1
1,229,304	+				-0.9
1,229,306	+				-0.5
1,229,306	+				-0.1
1,229,312	-				-0.1
1,229,312	-				-0.8
1,229,312	-				-0.8
1,229,314	-				-0.2
1,229,316	+				+0.1
1,229,316	+				-0.5
1,229,316	+				+0.4
1,229,316	+				-0.8
1,229,316	+				-0.7
1,229,316	+				-1.0
1,229,316	+				+1.1
1,229,316	+				-0.9
1,229,316	+				-2.4
1,229,316	+				+0.6
1,229,316	+				-0.4
1,229,318	+				+0.0
1,229,323	+				-1.4
1,229,324	-				+0.7
1,229,324	-				-1.5
1,229,324	-				+0.9
1,229,324	-				-0.2
1,229,324	-				-0.9
1,229,324	-				-0.6
1,229,324	-				-0.2
1,229,324	-				+0.5
1,229,324	-				-3.3
1,229,324	-				+0.8
1,229,324	-				-1.2
1,229,324	-				-0.4
1,229,324	-				-2.5
1,229,324	-				-0.5
1,229,326	-				+0.1
1,229,326	-				-0.4
1,229,331	-				-2.4
1,229,339	+				-1.0
1,229,339	+				-2.8
1,229,339	+				+0.2
1,229,339	+				-1.4
1,229,358	+				-0.9
1,229,358	-				+0.1
1,229,363	+				-0.5
1,229,363	+				-2.2
1,229,371	-				-0.5
1,229,371	-				-0.9
1,229,372	-				+0.2
1,229,407	-				-1.9
1,229,409	+				-1.9
1,229,412	-				-0.9
1,229,425	-				+0.3
1,229,425	-				-0.2
1,229,438	+				-0.4
1,229,463	+				+0.9
1,229,463	+				-0.9
1,229,482	+				-0.5
1,229,497	-				-1.3
1,229,542	+		GFF1209	0.13	-0.6
1,229,542	+		GFF1209	0.13	-0.9
1,229,570	-		GFF1209	0.17	+0.9
1,229,590	-		GFF1209	0.20	+0.3
1,229,595	-		GFF1209	0.21	-0.8
1,229,597	+		GFF1209	0.21	-1.4
1,229,605	-		GFF1209	0.22	-0.0
1,229,609	-		GFF1209	0.23	+0.6
1,229,610	-		GFF1209	0.23	-1.1
1,229,617	-		GFF1209	0.24	+0.8
1,229,645	+		GFF1209	0.28	-0.7
1,229,645	+		GFF1209	0.28	-1.5
1,229,645	+		GFF1209	0.28	-2.7
1,229,645	+		GFF1209	0.28	+0.2
1,229,645	+		GFF1209	0.28	-0.5
1,229,645	+		GFF1209	0.28	+0.5
1,229,645	+		GFF1209	0.28	+0.1
1,229,645	+		GFF1209	0.28	-0.9
1,229,645	+		GFF1209	0.28	-1.6
1,229,645	+		GFF1209	0.28	-0.2
1,229,645	+		GFF1209	0.28	-1.1
1,229,645	+		GFF1209	0.28	-0.8
1,229,645	+		GFF1209	0.28	-1.2
1,229,645	+		GFF1209	0.28	-1.2
1,229,645	+		GFF1209	0.28	+0.6
1,229,650	+		GFF1209	0.28	-1.5
1,229,650	+		GFF1209	0.28	-0.6
1,229,653	-		GFF1209	0.29	-1.4
1,229,653	-		GFF1209	0.29	+0.4
1,229,653	-		GFF1209	0.29	+0.2
1,229,653	-		GFF1209	0.29	+0.8
1,229,653	-		GFF1209	0.29	+0.1
1,229,653	-		GFF1209	0.29	-2.2
1,229,653	-		GFF1209	0.29	+0.3
1,229,653	-		GFF1209	0.29	-1.2
1,229,659	-		GFF1209	0.30	+1.1
1,229,665	-		GFF1209	0.30	-1.5
1,229,679	+		GFF1209	0.32	+0.1
1,229,687	-		GFF1209	0.33	-0.5
1,229,804	+		GFF1209	0.50	-1.1
1,229,804	+		GFF1209	0.50	-0.1
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.2
1,229,812	-		GFF1209	0.51	-0.5
1,229,812	-		GFF1209	0.51	-2.3
1,229,853	+		GFF1209	0.57	-0.2
1,229,868	+		GFF1209	0.59	-0.3
1,229,876	+		GFF1209	0.60	-1.2
1,229,876	-		GFF1209	0.60	-0.4
1,229,904	+		GFF1209	0.64	+0.5
1,229,913	+		GFF1209	0.65	-2.2
1,229,913	+		GFF1209	0.65	-0.4
1,229,913	+		GFF1209	0.65	-1.4
1,229,914	+		GFF1209	0.65	-0.8
1,229,914	+		GFF1209	0.65	-1.3
1,229,918	+		GFF1209	0.66	-0.2
1,229,921	-		GFF1209	0.66	+0.2
1,229,923	+		GFF1209	0.67	-1.5
1,229,931	-		GFF1209	0.68	-0.7
1,229,931	-		GFF1209	0.68	-1.0
1,229,931	-		GFF1209	0.68	+1.4
1,229,931	-		GFF1209	0.68	-1.8
1,229,931	-		GFF1209	0.68	+0.2
1,229,941	-		GFF1209	0.69	+0.5
1,229,950	-		GFF1209	0.70	-2.8
1,229,971	-		GFF1209	0.73	-0.6
1,229,980	-		GFF1209	0.75	+0.8
1,229,999	-		GFF1209	0.77	-0.1
1,230,030	-		GFF1209	0.82	-0.3
1,230,030	-		GFF1209	0.82	+0.8
1,230,033	+		GFF1209	0.82	-2.0
1,230,037	-		GFF1209	0.83	+0.2
1,230,041	+		GFF1209	0.83	-1.9
1,230,043	+		GFF1209	0.84	-1.1
1,230,043	+		GFF1209	0.84	+0.0
1,230,044	+		GFF1209	0.84	+1.1
1,230,044	+		GFF1209	0.84	+0.8
1,230,051	-		GFF1209	0.85	-0.0
1,230,051	-		GFF1209	0.85	-0.6
1,230,051	-		GFF1209	0.85	+0.4
1,230,051	-		GFF1209	0.85	-0.6
1,230,051	-		GFF1209	0.85	+0.3
1,230,051	-		GFF1209	0.85	+0.6
1,230,060	+		GFF1209	0.86	+0.0
1,230,071	+		GFF1209	0.87	+0.0
1,230,090	+				-0.8
1,230,108	+				-1.9
1,230,109	+				+0.9
1,230,136	-				-0.5
1,230,153	+				-0.7
1,230,178	-				+1.2
1,230,234	-				-1.3
1,230,257	-				-0.8
1,230,259	+				-1.0
1,230,291	-				+1.1
1,230,300	-		GFF1210	0.11	+0.7
1,230,328	+		GFF1210	0.13	-1.1
1,230,338	+		GFF1210	0.13	-0.4
1,230,345	+		GFF1210	0.14	-1.6
1,230,346	-		GFF1210	0.14	-2.5
1,230,412	+		GFF1210	0.19	+0.6
1,230,422	+		GFF1210	0.20	+0.6
1,230,430	+		GFF1210	0.20	-0.2
1,230,453	-		GFF1210	0.22	+0.1
1,230,499	-		GFF1210	0.25	+1.4
1,230,503	+		GFF1210	0.26	+0.3
1,230,503	+		GFF1210	0.26	-0.7
1,230,503	+		GFF1210	0.26	-0.6
1,230,511	-		GFF1210	0.26	+0.7
1,230,511	-		GFF1210	0.26	+0.5
1,230,516	-		GFF1210	0.27	-1.9
1,230,567	+		GFF1210	0.30	-0.8
1,230,594	+		GFF1210	0.32	-0.3
1,230,635	-		GFF1210	0.35	+0.1
1,230,656	-		GFF1210	0.37	+0.2
1,230,725	-		GFF1210	0.42	-0.5
1,230,745	-		GFF1210	0.43	-1.5
1,230,841	-		GFF1210	0.51	+0.1
1,230,849	-		GFF1210	0.51	+0.5
1,230,865	+		GFF1210	0.52	-0.4
1,230,881	-		GFF1210	0.53	+0.4
1,230,894	+		GFF1210	0.54	-2.4
1,230,894	+		GFF1210	0.54	-0.3
1,230,894	+		GFF1210	0.54	+0.5
1,230,897	-		GFF1210	0.55	-1.2
1,230,899	-		GFF1210	0.55	+1.3
1,230,907	-		GFF1210	0.55	+0.9
1,230,916	+		GFF1210	0.56	-0.9
1,230,924	-		GFF1210	0.57	+0.2
1,230,924	-		GFF1210	0.57	-0.5
1,230,962	+		GFF1210	0.59	-2.1
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