Strain Fitness in Sphingobium sp. HT1-2 around GFF12

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
6,798	+		GFF11	0.37	-0.0
6,865	-		GFF11	0.41	-0.2
6,868	+		GFF11	0.41	+1.3
6,873	+		GFF11	0.42	-1.7
6,873	+		GFF11	0.42	-2.0
6,881	-		GFF11	0.42	-0.3
6,881	-		GFF11	0.42	-2.0
6,885	+		GFF11	0.42	+0.8
6,891	+		GFF11	0.43	+0.7
6,895	+		GFF11	0.43	-2.2
6,905	+		GFF11	0.44	-0.4
6,905	+		GFF11	0.44	+0.7
6,913	-		GFF11	0.44	-1.1
6,914	+		GFF11	0.44	+1.1
6,923	+		GFF11	0.45	-1.5
6,962	+		GFF11	0.47	-0.4
6,965	-		GFF11	0.48	-1.9
6,965	-		GFF11	0.48	-1.1
6,968	+		GFF11	0.48	+0.6
6,968	+		GFF11	0.48	-0.2
6,976	-		GFF11	0.48	+0.1
6,980	+		GFF11	0.48	-1.2
6,985	+		GFF11	0.49	+1.0
6,985	+		GFF11	0.49	-1.2
6,985	+		GFF11	0.49	+0.6
6,985	+		GFF11	0.49	+0.3
6,985	+		GFF11	0.49	-0.2
6,993	-		GFF11	0.49	+0.2
6,995	-		GFF11	0.49	-2.8
7,032	+		GFF11	0.52	-1.2
7,036	+		GFF11	0.52	-0.3
7,037	-		GFF11	0.52	-0.2
7,039	-		GFF11	0.52	+0.6
7,040	-		GFF11	0.52	+0.1
7,043	+		GFF11	0.53	-0.6
7,045	-		GFF11	0.53	+0.6
7,051	-		GFF11	0.53	-0.5
7,063	+		GFF11	0.54	+0.4
7,066	+		GFF11	0.54	+0.8
7,079	-		GFF11	0.55	-0.4
7,098	-		GFF11	0.56	-1.7
7,131	-		GFF11	0.58	-0.3
7,136	-		GFF11	0.58	+0.6
7,138	+		GFF11	0.59	+0.1
7,147	-		GFF11	0.59	-0.7
7,150	+		GFF11	0.59	+0.3
7,186	+		GFF11	0.62	-0.2
7,193	+		GFF11	0.62	-0.7
7,194	-		GFF11	0.62	-2.0
7,203	+		GFF11	0.63	+0.6
7,209	+		GFF11	0.63	+0.3
7,217	-		GFF11	0.64	-0.6
7,217	-		GFF11	0.64	-1.5
7,219	+		GFF11	0.64	+0.3
7,219	+		GFF11	0.64	-0.9
7,219	+		GFF11	0.64	-0.0
7,219	+		GFF11	0.64	+0.1
7,227	-		GFF11	0.64	-0.4
7,227	-		GFF11	0.64	-0.1
7,227	-		GFF11	0.64	+0.9
7,228	+		GFF11	0.64	+0.2
7,236	-		GFF11	0.65	-1.1
7,245	+		GFF11	0.65	+0.2
7,245	+		GFF11	0.65	+0.7
7,270	+		GFF11	0.67	-0.5
7,273	+		GFF11	0.67	-2.1
7,279	-		GFF11	0.68	-0.1
7,279	-		GFF11	0.68	+0.3
7,279	-		GFF11	0.68	+0.1
7,279	-		GFF11	0.68	-1.4
7,293	+		GFF11	0.69	+0.2
7,293	+		GFF11	0.69	+0.7
7,293	+		GFF11	0.69	-1.5
7,301	-		GFF11	0.69	-0.7
7,303	-		GFF11	0.69	+0.0
7,330	+		GFF11	0.71	-0.5
7,338	-		GFF11	0.71	+0.8
7,339	-		GFF11	0.71	+1.0
7,384	+		GFF11	0.74	-1.6
7,384	+		GFF11	0.74	-0.6
7,386	+		GFF11	0.74	+0.5
7,386	+		GFF11	0.74	-0.8
7,392	-		GFF11	0.75	-1.4
7,394	-		GFF11	0.75	-0.3
7,396	+		GFF11	0.75	-0.1
7,410	+		GFF11	0.76	+0.0
7,418	-		GFF11	0.77	-0.6
7,430	-		GFF11	0.77	+0.6
7,472	+		GFF11	0.80	-1.7
7,474	-		GFF11	0.80	-0.5
7,480	-		GFF11	0.80	-1.1
7,517	+		GFF11	0.83	-1.4
7,517	+		GFF11	0.83	-0.3
7,520	-		GFF11	0.83	-1.5
7,520	-		GFF11	0.83	-1.9
7,525	-		GFF11	0.83	-0.8
7,525	-		GFF11	0.83	+0.0
7,528	+		GFF11	0.84	-1.1
7,535	-		GFF11	0.84	+0.2
7,535	-		GFF11	0.84	-0.3
7,607	-		GFF11	0.89	+0.4
7,634	+				+0.9
7,648	+				+1.6
7,648	+				+1.1
7,648	+				+1.4
7,648	+				+0.1
7,649	-				-0.4
7,649	-				-2.6
7,656	-				+0.4
7,656	-				+0.3
7,656	-				-1.3
7,656	-				-0.4
7,672	+				-0.2
7,672	+				-0.5
7,676	+				-0.2
7,680	-				-0.3
7,682	+				+0.8
7,682	+				-3.6
7,682	+				+1.6
7,690	-				-2.4
7,690	-				+0.9
7,690	-				+0.1
7,690	-				-0.6
7,693	+				-0.3
7,709	+				-0.9
7,715	+				-1.0
7,717	-				+0.9
7,723	-				-0.5
7,767	-				+0.6
7,855	+				-0.5
7,870	-				-1.1
7,920	+		GFF12	0.10	+0.1
7,966	-		GFF12	0.14	-0.3
7,966	-		GFF12	0.14	-0.5
7,966	-		GFF12	0.14	-0.4
7,988	+		GFF12	0.16	-1.1
7,989	+		GFF12	0.16	-1.3
7,990	-		GFF12	0.16	+1.3
7,996	-		GFF12	0.16	-1.4
7,997	-		GFF12	0.16	-0.1
7,999	+		GFF12	0.16	-1.2
8,018	-		GFF12	0.18	-1.9
8,034	+		GFF12	0.19	+0.5
8,041	+		GFF12	0.20	+0.3
8,060	-		GFF12	0.21	-0.2
8,070	-		GFF12	0.22	-0.2
8,074	-		GFF12	0.22	-1.0
8,076	+		GFF12	0.23	-0.3
8,097	-		GFF12	0.24	+0.5
8,122	+		GFF12	0.26	-2.2
8,122	+		GFF12	0.26	+0.3
8,151	-		GFF12	0.29	+0.8
8,153	+		GFF12	0.29	-0.1
8,161	-		GFF12	0.30	-1.3
8,162	-		GFF12	0.30	+0.3
8,203	+		GFF12	0.33	+1.8
8,227	-		GFF12	0.35	-1.3
8,291	-		GFF12	0.40	-1.5
8,291	-		GFF12	0.40	-0.1
8,298	-		GFF12	0.41	-2.4
8,320	-		GFF12	0.42	-0.3
8,321	+		GFF12	0.42	-0.1
8,321	+		GFF12	0.42	+1.6
8,322	+		GFF12	0.43	-0.4
8,329	-		GFF12	0.43	-1.5
8,329	-		GFF12	0.43	+0.2
8,347	-		GFF12	0.45	-1.4
8,356	+		GFF12	0.45	-1.1
8,356	+		GFF12	0.45	+0.9
8,356	+		GFF12	0.45	-0.7
8,356	+		GFF12	0.45	-0.2
8,356	+		GFF12	0.45	-0.2
8,356	+		GFF12	0.45	+0.1
8,356	+		GFF12	0.45	+0.2
8,364	-		GFF12	0.46	-0.7
8,364	-		GFF12	0.46	-1.3
8,364	-		GFF12	0.46	-0.5
8,364	-		GFF12	0.46	+0.3
8,372	-		GFF12	0.47	-1.4
8,425	-		GFF12	0.51	+1.0
8,444	+		GFF12	0.52	+0.6
8,444	+		GFF12	0.52	-0.7
8,457	-		GFF12	0.53	+0.9
8,471	+		GFF12	0.55	-0.4
8,490	-		GFF12	0.56	+0.2
8,490	-		GFF12	0.56	+0.3
8,507	-		GFF12	0.58	-0.1
8,517	+		GFF12	0.58	-1.0
8,520	-		GFF12	0.59	-0.1
8,536	+		GFF12	0.60	-0.7
8,544	-		GFF12	0.61	-0.3
8,544	-		GFF12	0.61	+0.9
8,555	-		GFF12	0.61	-0.4
8,566	+		GFF12	0.62	+0.2
8,566	+		GFF12	0.62	-0.6
8,573	+		GFF12	0.63	-1.3
8,574	-		GFF12	0.63	-1.4
8,574	-		GFF12	0.63	-1.2
8,583	+		GFF12	0.64	-1.5
8,589	-		GFF12	0.64	-0.0
8,589	-		GFF12	0.64	+0.9
8,615	-		GFF12	0.66	-1.5
8,671	+		GFF12	0.71	-1.0
8,673	-		GFF12	0.71	+1.6
8,690	+		GFF12	0.72	-0.7
8,695	+		GFF12	0.73	+1.0
8,695	+		GFF12	0.73	-1.2
8,697	+		GFF12	0.73	-0.5
8,697	+		GFF12	0.73	-1.0
8,698	-		GFF12	0.73	-0.2
8,698	-		GFF12	0.73	-2.1
8,703	-		GFF12	0.73	-0.9
8,706	+		GFF12	0.74	+1.3
8,706	+		GFF12	0.74	-0.8
8,714	-		GFF12	0.74	-1.4
8,716	+		GFF12	0.74	-0.1
8,719	-		GFF12	0.75	-0.1
8,737	+		GFF12	0.76	-0.1
8,737	+		GFF12	0.76	+0.9
8,737	+		GFF12	0.76	-0.2
8,745	-		GFF12	0.77	+1.1
8,745	-		GFF12	0.77	+1.0
8,745	-		GFF12	0.77	-0.5
8,745	-		GFF12	0.77	+0.1
8,745	-		GFF12	0.77	+0.4
8,773	+		GFF12	0.79	-0.1
8,781	-		GFF12	0.80	-0.4
8,796	+		GFF12	0.81	+0.3
8,821	-		GFF12	0.83	-0.1
8,823	-		GFF12	0.83	-1.1
8,823	-		GFF12	0.83	-0.7
8,829	+		GFF12	0.84	-0.6
8,829	-		GFF12	0.84	+0.1
8,837	-		GFF12	0.84	-1.6
8,939	+				-2.4
8,947	-				-0.5
8,947	-				-0.7
8,948	-				-0.3
8,948	-				-0.3
8,949	+				+0.2
8,967	+				-0.2
8,967	-				-0.2
8,971	+				+0.7
8,971	+				+0.3
8,973	+				+0.4
8,973	+				+0.1
8,979	+				-1.4
8,979	-				+1.6
8,981	-				-1.7
8,981	-				-1.5
8,981	-				+0.6
8,981	-				-0.8
8,981	-				-0.1
8,985	+				-1.1
9,000	+				-1.2
9,000	+				-1.4
9,003	-				+0.1
9,005	+				+1.8
9,008	-				-0.8
9,008	-				-0.4
9,013	-				-0.5
9,013	-				+1.5
9,013	-				-0.5
9,013	-				+0.3
9,017	-				-0.6
9,018	-				+1.1
9,019	-				+0.6
9,026	+				+0.6
9,051	+				+0.7
9,053	+				+0.4
9,053	+				+1.0
9,053	+				-0.1
9,053	+				-2.5
9,053	+				+1.2
9,059	-				-1.6
9,059	-				+0.3
9,059	-				-0.5
9,059	-				+0.0
9,061	-				+0.1
9,061	-				-0.1
9,061	-				-2.6
9,061	-				-0.2
9,061	-				-1.1
9,061	-				+0.1
9,083	-				+1.3
9,167	+		GFF13	0.16	+0.7
9,198	+		GFF13	0.20	-0.3
9,198	+		GFF13	0.20	-0.9
9,206	-		GFF13	0.20	-0.6
9,206	-		GFF13	0.20	+0.2
9,216	-		GFF13	0.22	-1.2
9,219	-		GFF13	0.22	+0.5
9,219	-		GFF13	0.22	+0.4
9,220	+		GFF13	0.22	+0.6
9,229	-		GFF13	0.23	+0.7
9,257	-		GFF13	0.27	+0.5
9,298	-		GFF13	0.32	-2.6
9,310	+		GFF13	0.33	-0.4
9,318	+		GFF13	0.34	-1.3
9,319	+		GFF13	0.34	-0.6
9,326	-		GFF13	0.35	+0.1
9,343	+		GFF13	0.37	-0.6
9,343	+		GFF13	0.37	-1.6
9,351	-		GFF13	0.38	+0.3
9,368	+		GFF13	0.40	+0.4
9,376	-		GFF13	0.41	-1.4
9,404	+		GFF13	0.45	-0.3
9,426	+		GFF13	0.48	-1.9
9,426	+		GFF13	0.48	-0.8
9,426	+		GFF13	0.48	-1.7
9,426	+		GFF13	0.48	-0.5
9,426	+		GFF13	0.48	-0.5
9,426	+		GFF13	0.48	-1.2
9,434	-		GFF13	0.49	-0.6
9,434	-		GFF13	0.49	-0.3
9,434	-		GFF13	0.49	-0.3
9,434	-		GFF13	0.49	+0.4
9,434	-		GFF13	0.49	-1.1
9,434	-		GFF13	0.49	+0.3
9,461	-		GFF13	0.52	+0.7
9,483	-		GFF13	0.55	-1.1
9,496	+		GFF13	0.56	-0.8
9,496	+		GFF13	0.56	-1.7
9,496	+		GFF13	0.56	-1.6
9,504	-		GFF13	0.57	-1.5
9,504	-		GFF13	0.57	+0.3
9,504	-		GFF13	0.57	+0.7
9,504	-		GFF13	0.57	-0.5
9,504	-		GFF13	0.57	+0.4
9,504	-		GFF13	0.57	+0.5
9,504	-		GFF13	0.57	-2.3
9,528	+		GFF13	0.60	+0.4
9,536	-		GFF13	0.61	-0.4
9,596	-		GFF13	0.69	+0.5
9,617	-		GFF13	0.71	-1.3
9,743	-		GFF13	0.87	-1.5
9,797	-				+1.3
9,813	-				+1.5
9,814	-				-1.9
9,814	-				+0.3
9,814	-				+1.1
9,870	-				+0.6
9,912	-				-0.2
9,958	-		GFF14	0.11	+0.2
9,958	-		GFF14	0.11	+1.4
9,986	+		GFF14	0.14	+0.1
9,996	-		GFF14	0.15	-1.7
10,013	-		GFF14	0.16	-0.4
10,029	-		GFF14	0.18	+0.8