Strain Fitness in Sphingobium sp. HT1-2 around GFF1179

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,181,435	+		GFF1177	0.57	-0.1
1,181,443	-		GFF1177	0.58	-0.0
1,181,448	+		GFF1177	0.59	+0.5
1,181,496	+		GFF1177	0.64	+0.5
1,181,524	+		GFF1177	0.67	-0.2
1,181,552	-		GFF1177	0.70	-0.8
1,181,561	+		GFF1177	0.71	-1.4
1,181,653	+		GFF1177	0.81	+0.8
1,181,672	-		GFF1177	0.83	-1.4
1,181,716	+		GFF1177	0.87	-1.5
1,181,732	+		GFF1177	0.89	-1.5
1,181,757	+				+1.2
1,181,757	+				-0.2
1,181,757	+				+0.1
1,181,757	+				-0.5
1,181,757	+				+0.2
1,181,765	-				-0.6
1,181,765	-				-0.8
1,181,765	-				-0.8
1,181,765	-				-0.3
1,181,829	+				-0.9
1,181,857	-				-1.9
1,181,949	-		GFF1178	0.20	+0.9
1,181,951	+		GFF1178	0.20	+0.4
1,181,952	-		GFF1178	0.20	-2.4
1,182,045	-		GFF1178	0.35	+0.2
1,182,072	+		GFF1178	0.40	+0.1
1,182,112	+		GFF1178	0.46	-0.0
1,182,114	+		GFF1178	0.47	-2.4
1,182,120	-		GFF1178	0.48	-0.3
1,182,120	-		GFF1178	0.48	-1.0
1,182,120	-		GFF1178	0.48	+0.4
1,182,122	-		GFF1178	0.48	-1.4
1,182,142	-		GFF1178	0.51	-1.1
1,182,142	-		GFF1178	0.51	-0.6
1,182,144	+		GFF1178	0.52	+0.3
1,182,146	+		GFF1178	0.52	-2.0
1,182,154	-		GFF1178	0.53	+0.6
1,182,162	-		GFF1178	0.55	+1.8
1,182,188	+		GFF1178	0.59	-0.4
1,182,196	-		GFF1178	0.60	-1.2
1,182,210	+		GFF1178	0.62	+0.8
1,182,218	-		GFF1178	0.64	-0.7
1,182,260	+		GFF1178	0.71	-1.0
1,182,284	+		GFF1178	0.75	-0.4
1,182,292	-		GFF1178	0.76	+1.3
1,182,292	-		GFF1178	0.76	-0.3
1,182,292	-		GFF1178	0.76	+0.2
1,182,292	-		GFF1178	0.76	-0.5
1,182,292	-		GFF1178	0.76	-1.0
1,182,367	+		GFF1178	0.88	-0.2
1,182,385	-				-2.1
1,182,406	+				-0.1
1,182,428	+				+0.7
1,182,428	+				+0.3
1,182,428	+				-2.0
1,182,428	+				+1.2
1,182,436	-				-0.3
1,182,436	-				-0.8
1,182,480	-				+0.4
1,182,509	+				-0.6
1,182,514	+				+1.1
1,182,517	-				+0.1
1,182,522	-				+0.9
1,182,525	-				-1.7
1,182,537	-				-0.9
1,182,553	+				+1.1
1,182,600	-		GFF1179	0.10	+0.5
1,182,614	+		GFF1179	0.11	-1.0
1,182,624	-		GFF1179	0.12	+0.4
1,182,640	+		GFF1179	0.13	-1.9
1,182,640	+		GFF1179	0.13	-1.1
1,182,640	+		GFF1179	0.13	-1.5
1,182,645	+		GFF1179	0.13	+0.4
1,182,646	+		GFF1179	0.13	+0.5
1,182,646	+		GFF1179	0.13	+0.2
1,182,646	+		GFF1179	0.13	+0.0
1,182,653	-		GFF1179	0.14	-2.3
1,182,655	+		GFF1179	0.14	-1.5
1,182,675	-		GFF1179	0.15	+0.2
1,182,681	+		GFF1179	0.15	-0.4
1,182,718	-		GFF1179	0.17	-0.1
1,182,718	-		GFF1179	0.17	-0.7
1,182,746	+		GFF1179	0.19	-0.4
1,182,770	-		GFF1179	0.21	-1.2
1,182,789	+		GFF1179	0.22	-1.5
1,182,807	-		GFF1179	0.23	+0.8
1,182,814	-		GFF1179	0.23	-0.5
1,182,815	-		GFF1179	0.23	+1.0
1,182,826	+		GFF1179	0.24	-0.9
1,182,826	+		GFF1179	0.24	-0.4
1,182,833	+		GFF1179	0.24	-2.7
1,182,834	-		GFF1179	0.25	-0.3
1,182,841	-		GFF1179	0.25	-0.7
1,182,848	+		GFF1179	0.25	+1.0
1,182,848	+		GFF1179	0.25	-0.2
1,182,848	+		GFF1179	0.25	+0.2
1,182,848	+		GFF1179	0.25	+0.1
1,182,848	+		GFF1179	0.25	-1.4
1,182,848	+		GFF1179	0.25	+0.3
1,182,848	+		GFF1179	0.25	-1.0
1,182,848	+		GFF1179	0.25	+0.8
1,182,848	+		GFF1179	0.25	-1.3
1,182,856	-		GFF1179	0.26	-0.5
1,182,856	-		GFF1179	0.26	-0.7
1,182,856	-		GFF1179	0.26	-0.3
1,182,856	-		GFF1179	0.26	-1.0
1,182,856	-		GFF1179	0.26	-0.2
1,182,856	-		GFF1179	0.26	-0.1
1,182,856	-		GFF1179	0.26	+1.0
1,182,856	-		GFF1179	0.26	+0.1
1,182,856	-		GFF1179	0.26	+0.3
1,182,856	-		GFF1179	0.26	-0.1
1,182,856	-		GFF1179	0.26	-0.4
1,182,861	-		GFF1179	0.26	+0.3
1,182,865	+		GFF1179	0.26	+1.1
1,182,873	-		GFF1179	0.27	+0.1
1,182,873	-		GFF1179	0.27	+0.6
1,182,873	-		GFF1179	0.27	-1.2
1,182,875	+		GFF1179	0.27	+0.2
1,182,880	+		GFF1179	0.27	+0.1
1,182,883	-		GFF1179	0.28	-0.0
1,182,885	+		GFF1179	0.28	+1.0
1,182,893	+		GFF1179	0.28	-0.1
1,182,893	-		GFF1179	0.28	+0.9
1,182,893	-		GFF1179	0.28	-0.4
1,182,933	+		GFF1179	0.31	-1.9
1,182,933	+		GFF1179	0.31	+0.2
1,182,939	-		GFF1179	0.31	-1.2
1,182,950	+		GFF1179	0.32	+0.2
1,182,958	-		GFF1179	0.32	+0.4
1,182,969	+		GFF1179	0.33	-0.0
1,182,969	+		GFF1179	0.33	-0.4
1,182,977	-		GFF1179	0.33	-0.5
1,182,977	-		GFF1179	0.33	-0.3
1,182,977	-		GFF1179	0.33	-0.2
1,183,010	-		GFF1179	0.35	-0.4
1,183,010	-		GFF1179	0.35	-0.3
1,183,010	-		GFF1179	0.35	-1.0
1,183,010	-		GFF1179	0.35	-1.1
1,183,031	+		GFF1179	0.36	-1.9
1,183,031	+		GFF1179	0.36	+0.1
1,183,033	+		GFF1179	0.37	-1.1
1,183,039	-		GFF1179	0.37	-0.8
1,183,041	-		GFF1179	0.37	-0.6
1,183,044	+		GFF1179	0.37	+1.7
1,183,052	+		GFF1179	0.38	-1.1
1,183,058	+		GFF1179	0.38	+0.4
1,183,066	-		GFF1179	0.39	-0.8
1,183,096	+		GFF1179	0.40	+0.5
1,183,101	+		GFF1179	0.41	-1.5
1,183,101	+		GFF1179	0.41	+0.3
1,183,101	+		GFF1179	0.41	-0.2
1,183,101	+		GFF1179	0.41	-0.9
1,183,106	+		GFF1179	0.41	-0.0
1,183,114	+		GFF1179	0.42	+0.4
1,183,114	+		GFF1179	0.42	+1.9
1,183,122	+		GFF1179	0.42	+0.2
1,183,122	-		GFF1179	0.42	-0.1
1,183,122	-		GFF1179	0.42	+0.2
1,183,129	-		GFF1179	0.42	+0.2
1,183,132	+		GFF1179	0.43	-0.4
1,183,132	+		GFF1179	0.43	+0.4
1,183,140	-		GFF1179	0.43	-0.0
1,183,153	+		GFF1179	0.44	-2.3
1,183,173	+		GFF1179	0.45	+0.1
1,183,181	-		GFF1179	0.46	+0.1
1,183,190	+		GFF1179	0.46	+0.1
1,183,198	-		GFF1179	0.47	-0.3
1,183,198	-		GFF1179	0.47	-1.0
1,183,198	-		GFF1179	0.47	-1.6
1,183,200	+		GFF1179	0.47	-0.5
1,183,203	-		GFF1179	0.47	-1.6
1,183,228	-		GFF1179	0.48	-0.3
1,183,238	-		GFF1179	0.49	-0.4
1,183,248	-		GFF1179	0.50	-3.5
1,183,258	-		GFF1179	0.50	+0.8
1,183,275	-		GFF1179	0.51	-0.8
1,183,279	+		GFF1179	0.52	-1.1
1,183,292	-		GFF1179	0.52	-1.2
1,183,294	-		GFF1179	0.52	-0.8
1,183,314	+		GFF1179	0.54	-2.3
1,183,319	+		GFF1179	0.54	+0.6
1,183,322	-		GFF1179	0.54	-0.4
1,183,322	-		GFF1179	0.54	+1.7
1,183,322	-		GFF1179	0.54	+0.9
1,183,322	-		GFF1179	0.54	-0.2
1,183,324	+		GFF1179	0.54	-0.5
1,183,327	-		GFF1179	0.54	+1.2
1,183,332	-		GFF1179	0.55	+1.0
1,183,371	-		GFF1179	0.57	+1.6
1,183,389	-		GFF1179	0.58	-0.7
1,183,406	+		GFF1179	0.59	-2.4
1,183,416	+		GFF1179	0.60	+1.0
1,183,416	+		GFF1179	0.60	-1.1
1,183,424	-		GFF1179	0.60	-0.1
1,183,429	-		GFF1179	0.61	-0.5
1,183,431	+		GFF1179	0.61	-0.6
1,183,441	+		GFF1179	0.61	+0.3
1,183,457	+		GFF1179	0.62	-0.6
1,183,465	-		GFF1179	0.63	+1.3
1,183,508	+		GFF1179	0.65	-1.2
1,183,539	-		GFF1179	0.67	-1.5
1,183,547	+		GFF1179	0.68	+0.5
1,183,547	-		GFF1179	0.68	-0.2
1,183,553	+		GFF1179	0.68	+1.0
1,183,555	-		GFF1179	0.68	-0.7
1,183,561	+		GFF1179	0.69	+0.9
1,183,595	+		GFF1179	0.71	-1.3
1,183,603	-		GFF1179	0.71	+1.4
1,183,614	-		GFF1179	0.72	-0.7
1,183,619	-		GFF1179	0.72	-0.6
1,183,634	-		GFF1179	0.73	+0.0
1,183,665	+		GFF1179	0.75	-0.5
1,183,684	+		GFF1179	0.76	-0.7
1,183,684	+		GFF1179	0.76	+0.3
1,183,684	+		GFF1179	0.76	-0.4
1,183,684	+		GFF1179	0.76	-0.8
1,183,684	+		GFF1179	0.76	+0.7
1,183,684	+		GFF1179	0.76	+0.4
1,183,692	-		GFF1179	0.77	-0.6
1,183,692	-		GFF1179	0.77	+0.0
1,183,692	-		GFF1179	0.77	-1.2
1,183,709	+		GFF1179	0.78	+0.6
1,183,717	-		GFF1179	0.78	-0.0
1,183,717	-		GFF1179	0.78	-0.5
1,183,717	-		GFF1179	0.78	+0.1
1,183,741	+		GFF1179	0.80	-1.4
1,183,744	+		GFF1179	0.80	-0.7
1,183,749	+		GFF1179	0.80	+0.4
1,183,751	-		GFF1179	0.80	+0.5
1,183,752	-		GFF1179	0.80	-0.7
1,183,757	-		GFF1179	0.81	+1.3
1,183,757	-		GFF1179	0.81	-0.5
1,183,757	-		GFF1179	0.81	+0.3
1,183,759	-		GFF1179	0.81	+0.2
1,183,759	-		GFF1179	0.81	-0.0
1,183,776	-		GFF1179	0.82	+0.8
1,183,799	-		GFF1179	0.83	-0.6
1,183,804	-		GFF1179	0.83	-0.3
1,183,817	+		GFF1179	0.84	-2.5
1,183,821	-		GFF1179	0.84	-0.7
1,183,827	-		GFF1179	0.85	-2.6
1,183,842	-		GFF1179	0.86	-0.4
1,183,884	-		GFF1179	0.88	+0.9
1,183,900	+		GFF1179	0.89	+1.0
1,183,925	-				-0.1
1,183,927	+				-0.0
1,183,927	+				-1.8
1,183,927	-				-0.2
1,183,932	+				-2.0
1,183,940	-				+0.5
1,183,945	-				-0.3
1,183,947	+				-0.3
1,183,947	+				-0.9
1,183,947	+				+0.3
1,183,947	+				-1.8
1,183,952	+				-0.2
1,183,955	-				-1.7
1,183,955	-				+0.8
1,183,964	-				+0.4
1,183,970	-				-1.4
1,183,993	+				-1.3
1,184,002	+				-2.0
1,184,009	-				+0.3
1,184,023	+				+0.6
1,184,034	-				-0.7
1,184,052	+				+1.0
1,184,059	-				-0.1
1,184,066	-				-1.7
1,184,122	-				-0.7
1,184,270	-				-1.4
1,184,270	-				-1.6
1,184,329	+				-1.2
1,184,330	+				+0.2
1,184,330	+				-0.7
1,184,330	+				+0.8
1,184,338	-				-1.9
1,184,338	-				-1.5
1,184,338	-				-0.7
1,184,339	+				+0.8
1,184,351	+				-1.6
1,184,355	+				+0.5
1,184,357	-				-1.5
1,184,363	-				-0.8
1,184,366	+				-0.5
1,184,366	+				-0.6
1,184,370	+		GFF1180	0.10	-0.0
1,184,371	+		GFF1180	0.11	+0.1
1,184,378	-		GFF1180	0.11	+0.6
1,184,378	-		GFF1180	0.11	-0.6
1,184,384	-		GFF1180	0.12	+0.5
1,184,455	+		GFF1180	0.21	-1.0
1,184,455	-		GFF1180	0.21	+0.6
1,184,457	+		GFF1180	0.21	-2.3
1,184,476	-		GFF1180	0.24	-0.1
1,184,494	+		GFF1180	0.26	+0.2
1,184,494	+		GFF1180	0.26	+0.1
1,184,494	+		GFF1180	0.26	+0.1
1,184,497	-		GFF1180	0.26	-0.1
1,184,497	-		GFF1180	0.26	-1.5
1,184,499	+		GFF1180	0.27	+0.4
1,184,499	+		GFF1180	0.27	-0.1
1,184,499	+		GFF1180	0.27	-1.9
1,184,502	-		GFF1180	0.27	+0.1
1,184,502	-		GFF1180	0.27	-1.1
1,184,507	-		GFF1180	0.28	+1.2
1,184,507	-		GFF1180	0.28	+0.2
1,184,507	-		GFF1180	0.28	+0.1
1,184,526	+		GFF1180	0.30	-0.1
1,184,526	+		GFF1180	0.30	-1.2
1,184,526	+		GFF1180	0.30	+1.0
1,184,526	+		GFF1180	0.30	-3.0
1,184,526	+		GFF1180	0.30	+0.3
1,184,529	-		GFF1180	0.30	-0.2
1,184,534	-		GFF1180	0.31	+0.1
1,184,534	-		GFF1180	0.31	+0.6
1,184,534	-		GFF1180	0.31	-0.7
1,184,537	+		GFF1180	0.31	+0.2
1,184,563	+		GFF1180	0.35	+1.5
1,184,564	+		GFF1180	0.35	+0.3
1,184,564	+		GFF1180	0.35	+0.6
1,184,564	+		GFF1180	0.35	-1.3
1,184,564	+		GFF1180	0.35	+0.7
1,184,564	+		GFF1180	0.35	+0.3
1,184,571	-		GFF1180	0.36	-1.1
1,184,572	-		GFF1180	0.36	-0.0
1,184,572	-		GFF1180	0.36	+0.4
1,184,578	+		GFF1180	0.37	-1.2
1,184,583	+		GFF1180	0.37	-0.0
1,184,583	+		GFF1180	0.37	+1.0
1,184,586	-		GFF1180	0.38	-0.5
1,184,588	+		GFF1180	0.38	-0.2
1,184,596	-		GFF1180	0.39	-0.2
1,184,596	-		GFF1180	0.39	-0.2
1,184,596	-		GFF1180	0.39	-0.2
1,184,606	-		GFF1180	0.40	-0.8
1,184,628	-		GFF1180	0.43	-1.2
1,184,630	+		GFF1180	0.43	-0.2
1,184,644	-		GFF1180	0.45	-0.9
1,184,649	+		GFF1180	0.46	-0.3
1,184,660	-		GFF1180	0.47	+0.8
1,184,662	-		GFF1180	0.47	-0.5
1,184,662	-		GFF1180	0.47	-0.2
1,184,662	-		GFF1180	0.47	-1.9
1,184,714	-		GFF1180	0.54	+1.0
1,184,720	-		GFF1180	0.54	-1.1
1,184,738	-		GFF1180	0.57	-0.2
1,184,746	+		GFF1180	0.58	+0.9
1,184,774	-		GFF1180	0.61	+0.4
1,184,784	-		GFF1180	0.63	-0.4
1,184,834	+		GFF1180	0.69	+0.9
1,184,852	-		GFF1180	0.71	-0.7
1,184,855	+		GFF1180	0.71	+0.5
1,184,856	-		GFF1180	0.72	-0.1
1,184,902	+		GFF1180	0.77	-0.7
1,184,905	-		GFF1180	0.78	-1.9
1,184,910	-		GFF1180	0.78	+0.0
1,184,910	-		GFF1180	0.78	+0.9
1,184,936	-		GFF1180	0.82	+0.1
1,184,983	+		GFF1180	0.88	-0.2
1,184,983	+		GFF1180	0.88	-1.0
1,184,983	+		GFF1180	0.88	-1.9
1,184,991	-		GFF1180	0.89	-0.0
1,184,996	-		GFF1180	0.89	+0.1
1,184,997	-		GFF1180	0.89	-1.4
1,185,012	+				-2.5
1,185,012	+				+0.4
1,185,012	+				-1.6
1,185,020	-				-0.3
1,185,020	-				-0.3
1,185,020	-				-0.8
1,185,020	-				-1.1
1,185,020	-				-0.1
1,185,020	-				-0.8
1,185,027	+				+0.6
1,185,027	+				-0.4
1,185,027	+				-0.1
1,185,027	+				-0.4
1,185,030	-				+0.2
1,185,032	+				+0.5
1,185,035	-				+0.2
1,185,035	-				+0.3
1,185,035	-				-0.1
1,185,035	-				-0.6
1,185,035	-				-0.6
1,185,044	-				-0.9
1,185,067	-				-2.4