Strain Fitness in Sphingobium sp. HT1-2 around GFF1177

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,179,900	+				-0.9
1,179,931	-				-0.8
1,179,942	+				-0.7
1,179,950	-				+0.6
1,179,950	-				-0.2
1,179,966	+				-1.2
1,179,985	+				+0.6
1,180,005	+				-0.1
1,180,029	-		GFF1176	0.13	-0.0
1,180,037	+		GFF1176	0.14	+0.6
1,180,045	-		GFF1176	0.15	+0.1
1,180,102	+		GFF1176	0.25	-0.7
1,180,108	+		GFF1176	0.26	+0.6
1,180,109	+		GFF1176	0.26	+0.1
1,180,118	-		GFF1176	0.28	-2.4
1,180,126	+		GFF1176	0.29	-0.1
1,180,129	-		GFF1176	0.30	+0.7
1,180,132	+		GFF1176	0.30	+0.4
1,180,138	+		GFF1176	0.31	-0.3
1,180,138	+		GFF1176	0.31	-0.3
1,180,149	+		GFF1176	0.33	+0.9
1,180,159	+		GFF1176	0.35	+1.0
1,180,165	+		GFF1176	0.36	+1.3
1,180,168	+		GFF1176	0.36	+0.6
1,180,187	+		GFF1176	0.40	+0.1
1,180,188	+		GFF1176	0.40	-0.9
1,180,196	-		GFF1176	0.41	-0.2
1,180,198	+		GFF1176	0.42	-2.9
1,180,206	+		GFF1176	0.43	-0.2
1,180,230	+		GFF1176	0.47	-2.3
1,180,230	+		GFF1176	0.47	-1.1
1,180,230	+		GFF1176	0.47	-0.1
1,180,230	+		GFF1176	0.47	-1.6
1,180,230	+		GFF1176	0.47	+0.3
1,180,230	+		GFF1176	0.47	+1.2
1,180,230	+		GFF1176	0.47	-0.5
1,180,231	+		GFF1176	0.47	-0.8
1,180,238	-		GFF1176	0.48	+1.0
1,180,238	-		GFF1176	0.48	-0.8
1,180,238	-		GFF1176	0.48	-0.1
1,180,238	-		GFF1176	0.48	-1.1
1,180,238	-		GFF1176	0.48	+0.2
1,180,238	-		GFF1176	0.48	-0.0
1,180,238	-		GFF1176	0.48	-0.6
1,180,238	-		GFF1176	0.48	-0.9
1,180,238	-		GFF1176	0.48	-0.4
1,180,239	-		GFF1176	0.49	+0.2
1,180,245	+		GFF1176	0.50	-0.3
1,180,245	+		GFF1176	0.50	-1.1
1,180,245	+		GFF1176	0.50	+0.9
1,180,245	+		GFF1176	0.50	-0.8
1,180,245	+		GFF1176	0.50	+0.5
1,180,245	+		GFF1176	0.50	+0.8
1,180,245	+		GFF1176	0.50	+0.9
1,180,245	+		GFF1176	0.50	-1.6
1,180,245	+		GFF1176	0.50	+0.2
1,180,246	-		GFF1176	0.50	+0.1
1,180,250	+		GFF1176	0.51	+0.7
1,180,250	+		GFF1176	0.51	+0.8
1,180,250	+		GFF1176	0.51	-1.5
1,180,250	+		GFF1176	0.51	-1.3
1,180,250	+		GFF1176	0.51	-0.7
1,180,250	+		GFF1176	0.51	-0.0
1,180,253	-		GFF1176	0.51	+0.7
1,180,253	-		GFF1176	0.51	-0.7
1,180,253	-		GFF1176	0.51	-0.4
1,180,253	-		GFF1176	0.51	-1.9
1,180,253	-		GFF1176	0.51	-1.5
1,180,253	-		GFF1176	0.51	+1.4
1,180,258	-		GFF1176	0.52	+0.2
1,180,258	-		GFF1176	0.52	-1.2
1,180,258	-		GFF1176	0.52	+0.6
1,180,258	-		GFF1176	0.52	-0.4
1,180,258	-		GFF1176	0.52	-1.8
1,180,273	-		GFF1176	0.54	-2.2
1,180,329	-		GFF1176	0.64	+0.6
1,180,358	+		GFF1176	0.69	-0.1
1,180,358	+		GFF1176	0.69	-0.5
1,180,366	-		GFF1176	0.70	-0.3
1,180,376	+		GFF1176	0.72	+0.4
1,180,381	+		GFF1176	0.73	-1.9
1,180,381	+		GFF1176	0.73	-2.4
1,180,381	+		GFF1176	0.73	-0.0
1,180,381	+		GFF1176	0.73	+0.2
1,180,381	+		GFF1176	0.73	-1.4
1,180,381	+		GFF1176	0.73	-0.9
1,180,388	+		GFF1176	0.74	-1.7
1,180,388	+		GFF1176	0.74	-1.4
1,180,389	-		GFF1176	0.74	+0.6
1,180,389	-		GFF1176	0.74	-0.4
1,180,389	-		GFF1176	0.74	-1.4
1,180,389	-		GFF1176	0.74	+1.1
1,180,389	-		GFF1176	0.74	-0.8
1,180,389	-		GFF1176	0.74	-1.9
1,180,389	-		GFF1176	0.74	-0.2
1,180,389	-		GFF1176	0.74	-1.6
1,180,402	+		GFF1176	0.77	-0.2
1,180,403	-		GFF1176	0.77	-1.1
1,180,409	+		GFF1176	0.78	-0.4
1,180,410	-		GFF1176	0.78	+0.3
1,180,410	-		GFF1176	0.78	-0.9
1,180,415	+		GFF1176	0.79	-0.8
1,180,422	+		GFF1176	0.80	-0.9
1,180,442	+		GFF1176	0.84	+0.8
1,180,452	-		GFF1176	0.85	-1.5
1,180,454	-		GFF1176	0.86	+0.3
1,180,459	-		GFF1176	0.86	-0.0
1,180,507	+				-1.1
1,180,507	+				+0.6
1,180,507	+				-0.0
1,180,507	+				+0.9
1,180,515	-				-0.9
1,180,515	-				-2.5
1,180,515	-				-1.1
1,180,517	+				-0.4
1,180,517	+				-0.2
1,180,517	+				+2.0
1,180,519	+				-2.5
1,180,519	+				+0.4
1,180,525	-				+1.8
1,180,525	-				-0.5
1,180,525	-				+0.0
1,180,525	-				-1.4
1,180,532	+				+0.1
1,180,540	-				+0.5
1,180,567	+				-0.5
1,180,567	+				-0.9
1,180,567	+				-0.7
1,180,567	+				-2.2
1,180,567	+				+0.5
1,180,574	+				-0.9
1,180,575	-				+0.5
1,180,575	-				-1.2
1,180,582	-				+0.2
1,180,657	+				-1.1
1,180,674	+				-1.6
1,180,682	-				-1.5
1,180,682	-				+0.2
1,180,689	-				-1.4
1,180,696	+				-0.4
1,180,697	+				-0.4
1,180,697	+				-1.5
1,180,713	-				+0.7
1,180,717	-				+0.5
1,180,719	-				+0.5
1,180,763	+				-0.9
1,180,770	-				+0.5
1,180,808	+				-0.2
1,180,816	+				+0.6
1,180,884	-				-1.0
1,180,917	-				-1.6
1,180,927	-				-2.8
1,180,944	+				+0.5
1,180,947	-				-0.1
1,180,948	-				+1.4
1,180,952	+				-0.4
1,180,952	+				+0.8
1,180,954	+				+0.2
1,180,954	+				+0.8
1,180,954	+				-1.8
1,180,954	+				+0.4
1,180,954	+				+0.2
1,180,954	+				-1.3
1,180,954	+				+0.2
1,180,954	+				+0.7
1,180,960	+				-0.7
1,180,962	-				+0.8
1,180,962	-				-1.7
1,180,962	-				-0.4
1,180,962	-				+0.7
1,180,962	-				-0.1
1,180,962	-				-1.6
1,180,962	-				+0.2
1,180,962	-				+0.8
1,180,975	+				-0.2
1,180,987	+				+0.3
1,181,002	-		GFF1177	0.11	+0.8
1,181,012	-		GFF1177	0.13	+0.2
1,181,022	-		GFF1177	0.14	+1.0
1,181,027	-		GFF1177	0.14	-2.4
1,181,035	+		GFF1177	0.15	-1.2
1,181,065	+		GFF1177	0.18	-0.2
1,181,164	+		GFF1177	0.29	-0.5
1,181,164	+		GFF1177	0.29	+0.5
1,181,167	-		GFF1177	0.29	-0.9
1,181,191	+		GFF1177	0.32	-0.9
1,181,200	+		GFF1177	0.32	+0.4
1,181,293	-		GFF1177	0.42	-1.6
1,181,435	+		GFF1177	0.57	-0.1
1,181,443	-		GFF1177	0.58	-0.0
1,181,448	+		GFF1177	0.59	+0.5
1,181,496	+		GFF1177	0.64	+0.5
1,181,524	+		GFF1177	0.67	-0.2
1,181,552	-		GFF1177	0.70	-0.8
1,181,561	+		GFF1177	0.71	-1.4
1,181,653	+		GFF1177	0.81	+0.8
1,181,672	-		GFF1177	0.83	-1.4
1,181,716	+		GFF1177	0.87	-1.5
1,181,732	+		GFF1177	0.89	-1.5
1,181,757	+				+1.2
1,181,757	+				-0.2
1,181,757	+				+0.1
1,181,757	+				-0.5
1,181,757	+				+0.2
1,181,765	-				-0.6
1,181,765	-				-0.8
1,181,765	-				-0.8
1,181,765	-				-0.3
1,181,829	+				-0.9
1,181,857	-				-1.9
1,181,949	-		GFF1178	0.20	+0.9
1,181,951	+		GFF1178	0.20	+0.4
1,181,952	-		GFF1178	0.20	-2.4
1,182,045	-		GFF1178	0.35	+0.2
1,182,072	+		GFF1178	0.40	+0.1
1,182,112	+		GFF1178	0.46	-0.0
1,182,114	+		GFF1178	0.47	-2.4
1,182,120	-		GFF1178	0.48	-0.3
1,182,120	-		GFF1178	0.48	-1.0
1,182,120	-		GFF1178	0.48	+0.4
1,182,122	-		GFF1178	0.48	-1.4
1,182,142	-		GFF1178	0.51	-1.1
1,182,142	-		GFF1178	0.51	-0.6
1,182,144	+		GFF1178	0.52	+0.3
1,182,146	+		GFF1178	0.52	-2.0
1,182,154	-		GFF1178	0.53	+0.6
1,182,162	-		GFF1178	0.55	+1.8
1,182,188	+		GFF1178	0.59	-0.4
1,182,196	-		GFF1178	0.60	-1.2
1,182,210	+		GFF1178	0.62	+0.8
1,182,218	-		GFF1178	0.64	-0.7
1,182,260	+		GFF1178	0.71	-1.0
1,182,284	+		GFF1178	0.75	-0.4
1,182,292	-		GFF1178	0.76	+1.3
1,182,292	-		GFF1178	0.76	-0.3
1,182,292	-		GFF1178	0.76	+0.2
1,182,292	-		GFF1178	0.76	-0.5
1,182,292	-		GFF1178	0.76	-1.0
1,182,367	+		GFF1178	0.88	-0.2
1,182,385	-				-2.1
1,182,406	+				-0.1
1,182,428	+				+0.7
1,182,428	+				+0.3
1,182,428	+				-2.0
1,182,428	+				+1.2
1,182,436	-				-0.3
1,182,436	-				-0.8
1,182,480	-				+0.4
1,182,509	+				-0.6
1,182,514	+				+1.1
1,182,517	-				+0.1
1,182,522	-				+0.9
1,182,525	-				-1.7
1,182,537	-				-0.9
1,182,553	+				+1.1
1,182,600	-		GFF1179	0.10	+0.5
1,182,614	+		GFF1179	0.11	-1.0
1,182,624	-		GFF1179	0.12	+0.4
1,182,640	+		GFF1179	0.13	-1.9
1,182,640	+		GFF1179	0.13	-1.1
1,182,640	+		GFF1179	0.13	-1.5
1,182,645	+		GFF1179	0.13	+0.4
1,182,646	+		GFF1179	0.13	+0.5
1,182,646	+		GFF1179	0.13	+0.2
1,182,646	+		GFF1179	0.13	+0.0
1,182,653	-		GFF1179	0.14	-2.3
1,182,655	+		GFF1179	0.14	-1.5
1,182,675	-		GFF1179	0.15	+0.2
1,182,681	+		GFF1179	0.15	-0.4
1,182,718	-		GFF1179	0.17	-0.1
1,182,718	-		GFF1179	0.17	-0.7
1,182,746	+		GFF1179	0.19	-0.4
1,182,770	-		GFF1179	0.21	-1.2
1,182,789	+		GFF1179	0.22	-1.5
1,182,807	-		GFF1179	0.23	+0.8
1,182,814	-		GFF1179	0.23	-0.5
1,182,815	-		GFF1179	0.23	+1.0
1,182,826	+		GFF1179	0.24	-0.9
1,182,826	+		GFF1179	0.24	-0.4
1,182,833	+		GFF1179	0.24	-2.7
1,182,834	-		GFF1179	0.25	-0.3