Strain Fitness in Sphingobium sp. HT1-2 around GFF1175

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,178,000	+		GFF1173	0.42	-0.8
1,178,000	+		GFF1173	0.42	-0.8
1,178,004	+		GFF1173	0.42	-1.8
1,178,008	-		GFF1173	0.43	-1.0
1,178,011	+		GFF1173	0.44	+0.8
1,178,031	+		GFF1173	0.49	+1.1
1,178,055	+		GFF1173	0.54	-0.6
1,178,055	+		GFF1173	0.54	-1.8
1,178,055	+		GFF1173	0.54	-0.5
1,178,055	+		GFF1173	0.54	+1.1
1,178,055	+		GFF1173	0.54	-2.2
1,178,063	-		GFF1173	0.56	-2.5
1,178,063	-		GFF1173	0.56	-0.7
1,178,063	-		GFF1173	0.56	-0.6
1,178,063	-		GFF1173	0.56	-0.9
1,178,086	-		GFF1173	0.61	+0.9
1,178,117	-		GFF1173	0.68	-0.2
1,178,120	+		GFF1173	0.69	-0.5
1,178,120	+		GFF1173	0.69	-2.5
1,178,120	+		GFF1173	0.69	+0.4
1,178,122	-		GFF1173	0.69	+0.2
1,178,151	+		GFF1173	0.76	-0.2
1,178,151	+		GFF1173	0.76	-1.5
1,178,159	-		GFF1173	0.78	+0.9
1,178,184	+		GFF1173	0.84	-0.1
1,178,184	+		GFF1173	0.84	-0.3
1,178,244	-				-2.3
1,178,259	+				+0.3
1,178,259	+				-0.3
1,178,259	+				+0.4
1,178,269	+				+0.9
1,178,277	-				-0.2
1,178,277	-				-0.6
1,178,277	-				-0.0
1,178,294	+		GFF1174	0.11	-1.5
1,178,295	+		GFF1174	0.12	+0.1
1,178,297	-		GFF1174	0.12	-0.9
1,178,297	-		GFF1174	0.12	+0.4
1,178,303	-		GFF1174	0.14	-2.2
1,178,310	+		GFF1174	0.16	+0.4
1,178,323	-		GFF1174	0.19	-0.5
1,178,339	+		GFF1174	0.24	-0.7
1,178,370	-		GFF1174	0.32	+0.6
1,178,380	-		GFF1174	0.35	+0.1
1,178,407	-		GFF1174	0.42	-1.2
1,178,427	-		GFF1174	0.48	+0.5
1,178,428	+		GFF1174	0.48	-1.9
1,178,428	+		GFF1174	0.48	-0.1
1,178,443	+		GFF1174	0.52	-0.2
1,178,463	+		GFF1174	0.58	+0.5
1,178,479	-		GFF1174	0.62	-0.1
1,178,479	-		GFF1174	0.62	-1.2
1,178,492	+		GFF1174	0.66	-1.0
1,178,492	+		GFF1174	0.66	-0.0
1,178,492	+		GFF1174	0.66	-0.4
1,178,492	+		GFF1174	0.66	+0.1
1,178,497	+		GFF1174	0.67	-0.9
1,178,497	+		GFF1174	0.67	+1.2
1,178,500	-		GFF1174	0.68	-0.3
1,178,500	-		GFF1174	0.68	+0.3
1,178,504	+		GFF1174	0.69	+0.5
1,178,504	+		GFF1174	0.69	-0.6
1,178,505	-		GFF1174	0.69	-0.9
1,178,505	-		GFF1174	0.69	-0.9
1,178,505	-		GFF1174	0.69	+0.0
1,178,505	-		GFF1174	0.69	-1.0
1,178,509	+		GFF1174	0.70	-1.5
1,178,512	-		GFF1174	0.71	+1.2
1,178,512	-		GFF1174	0.71	+0.7
1,178,512	-		GFF1174	0.71	+0.6
1,178,512	-		GFF1174	0.71	-1.4
1,178,512	-		GFF1174	0.71	-1.1
1,178,512	-		GFF1174	0.71	+0.5
1,178,512	-		GFF1174	0.71	-0.4
1,178,522	-		GFF1174	0.74	+0.4
1,178,522	-		GFF1174	0.74	+0.8
1,178,532	-		GFF1174	0.77	+0.0
1,178,535	+		GFF1174	0.77	+0.1
1,178,573	+		GFF1174	0.88	-0.3
1,178,580	+		GFF1174	0.90	-0.9
1,178,583	-				+0.8
1,178,588	-				-1.4
1,178,590	+				-0.1
1,178,593	-				-0.4
1,178,601	+				-1.4
1,178,607	-				+0.1
1,178,616	+				-0.5
1,178,653	+				-0.9
1,178,653	+				+0.4
1,178,653	+				-0.7
1,178,661	-				+0.3
1,178,684	-				+0.3
1,178,684	-				-0.5
1,178,684	-				+0.2
1,178,684	-				-1.3
1,178,684	-				+0.2
1,178,684	-				-0.0
1,178,684	-				-2.4
1,178,689	+				-0.2
1,178,694	+				-0.9
1,178,697	-				-0.1
1,178,701	-				-1.5
1,178,713	+				-1.5
1,178,713	+				-1.0
1,178,742	+				+1.4
1,178,742	+				+0.4
1,178,757	+				+0.1
1,178,761	-				+0.1
1,178,764	-				-0.4
1,178,765	-				+0.4
1,178,778	+				-1.0
1,178,778	+				+1.2
1,178,778	+				-1.4
1,178,778	+				+0.4
1,178,782	-				+0.4
1,178,786	-				-1.1
1,178,809	+				-1.2
1,178,847	+				+0.4
1,178,847	+				+0.9
1,178,855	-				-0.4
1,178,855	-				-0.6
1,178,900	-				-1.5
1,178,930	+				-0.7
1,178,930	+				+1.0
1,178,938	+				-0.9
1,178,940	-				-1.8
1,178,951	+				-0.4
1,178,954	-				-1.4
1,178,960	+				-2.0
1,178,960	+				-0.3
1,178,972	+				-0.8
1,178,980	-				-0.2
1,179,006	+		GFF1175	0.16	+0.4
1,179,010	+		GFF1175	0.19	-1.6
1,179,010	-		GFF1175	0.19	+0.9
1,179,012	+		GFF1175	0.20	-0.8
1,179,013	-		GFF1175	0.21	+1.2
1,179,018	-		GFF1175	0.24	-0.9
1,179,018	-		GFF1175	0.24	-1.9
1,179,018	-		GFF1175	0.24	+0.3
1,179,018	-		GFF1175	0.24	-1.4
1,179,020	-		GFF1175	0.25	-0.6
1,179,052	+		GFF1175	0.45	-1.2
1,179,057	+		GFF1175	0.48	+1.2
1,179,060	-		GFF1175	0.50	-2.1
1,179,062	+		GFF1175	0.52	-0.3
1,179,062	+		GFF1175	0.52	+0.4
1,179,062	+		GFF1175	0.52	-0.2
1,179,062	+		GFF1175	0.52	-0.4
1,179,062	+		GFF1175	0.52	-1.7
1,179,062	+		GFF1175	0.52	-1.9
1,179,062	+		GFF1175	0.52	+0.3
1,179,062	+		GFF1175	0.52	+0.9
1,179,062	+		GFF1175	0.52	-2.1
1,179,062	+		GFF1175	0.52	-1.3
1,179,065	-		GFF1175	0.53	-0.3
1,179,065	-		GFF1175	0.53	-0.4
1,179,069	+		GFF1175	0.56	+1.1
1,179,070	-		GFF1175	0.57	-0.0
1,179,070	-		GFF1175	0.57	+0.7
1,179,070	-		GFF1175	0.57	+0.2
1,179,070	-		GFF1175	0.57	-2.1
1,179,070	-		GFF1175	0.57	-1.5
1,179,070	-		GFF1175	0.57	-1.4
1,179,070	-		GFF1175	0.57	+0.6
1,179,070	-		GFF1175	0.57	+0.1
1,179,101	+		GFF1175	0.76	-1.3
1,179,101	+		GFF1175	0.76	+0.3
1,179,109	-		GFF1175	0.81	-0.7
1,179,113	+		GFF1175	0.84	-0.4
1,179,119	-		GFF1175	0.87	-0.7
1,179,120	+		GFF1175	0.88	-0.4
1,179,124	-				+0.1
1,179,133	-				+0.6
1,179,133	-				+0.3
1,179,149	+				-0.4
1,179,156	-				+0.4
1,179,170	+				+0.6
1,179,172	+				-1.3
1,179,173	+				+0.2
1,179,173	+				-0.7
1,179,191	-				-2.7
1,179,200	+				-1.0
1,179,208	+				+0.2
1,179,208	-				-0.1
1,179,215	-				-0.2
1,179,236	-				-0.5
1,179,315	+				-1.5
1,179,318	-				-0.6
1,179,336	+				-2.1
1,179,359	-				-1.5
1,179,359	-				+0.2
1,179,367	-				+0.6
1,179,378	+				-0.2
1,179,383	+				-1.4
1,179,386	-				-2.3
1,179,391	-				-0.2
1,179,391	-				-0.1
1,179,391	-				-0.8
1,179,391	-				-0.3
1,179,393	+				-0.0
1,179,401	+				+1.2
1,179,409	-				-0.2
1,179,409	-				-0.6
1,179,409	-				+1.4
1,179,426	-				-0.0
1,179,431	+				-0.2
1,179,439	-				+0.6
1,179,469	-				+2.1
1,179,471	+				-1.4
1,179,479	-				-0.8
1,179,483	-				+0.1
1,179,538	+				-1.4
1,179,545	+				-0.3
1,179,563	-				-0.6
1,179,570	+				+0.2
1,179,570	+				+0.1
1,179,578	-				-0.4
1,179,584	+				+0.7
1,179,600	+				+0.6
1,179,617	+				-0.2
1,179,627	+				+0.2
1,179,627	+				+0.8
1,179,629	-				-0.6
1,179,632	+				-2.3
1,179,635	-				-1.1
1,179,635	-				-2.1
1,179,635	-				-0.6
1,179,648	+				-1.6
1,179,657	+				+1.3
1,179,657	+				+0.8
1,179,657	+				-1.1
1,179,657	+				+0.7
1,179,665	-				-0.5
1,179,690	+				+0.7
1,179,750	-				-0.9
1,179,750	-				-0.5
1,179,759	+				-1.6
1,179,759	+				-0.5
1,179,759	+				-2.8
1,179,767	-				+0.2
1,179,767	-				+0.2
1,179,798	-				-0.0
1,179,804	+				-1.2
1,179,806	+				-0.1
1,179,822	-				-0.6
1,179,827	+				+0.6
1,179,838	+				-0.8
1,179,841	-				+0.3
1,179,878	-				-0.4
1,179,900	+				-0.9
1,179,931	-				-0.8
1,179,942	+				-0.7
1,179,950	-				+0.6
1,179,950	-				-0.2
1,179,966	+				-1.2
1,179,985	+				+0.6
1,180,005	+				-0.1
1,180,029	-		GFF1176	0.13	-0.0
1,180,037	+		GFF1176	0.14	+0.6
1,180,045	-		GFF1176	0.15	+0.1
1,180,102	+		GFF1176	0.25	-0.7
1,180,108	+		GFF1176	0.26	+0.6
1,180,109	+		GFF1176	0.26	+0.1
1,180,118	-		GFF1176	0.28	-2.4
1,180,126	+		GFF1176	0.29	-0.1
1,180,129	-		GFF1176	0.30	+0.7
1,180,132	+		GFF1176	0.30	+0.4
1,180,138	+		GFF1176	0.31	-0.3
1,180,138	+		GFF1176	0.31	-0.3