Strain Fitness in Sphingobium sp. HT1-2 around GFF1171

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,175,338	-		GFF1169	0.44	+2.4
1,175,341	+		GFF1169	0.44	-0.7
1,175,355	-		GFF1169	0.46	-0.1
1,175,373	+		GFF1169	0.48	-0.5
1,175,374	-		GFF1169	0.48	-0.9
1,175,375	-		GFF1169	0.48	-1.9
1,175,392	+		GFF1169	0.50	-0.6
1,175,392	+		GFF1169	0.50	+0.1
1,175,392	+		GFF1169	0.50	+0.2
1,175,392	+		GFF1169	0.50	+0.9
1,175,392	+		GFF1169	0.50	+0.3
1,175,392	+		GFF1169	0.50	+0.5
1,175,392	+		GFF1169	0.50	-1.4
1,175,397	+		GFF1169	0.51	+1.5
1,175,397	+		GFF1169	0.51	+1.5
1,175,397	+		GFF1169	0.51	-0.8
1,175,397	+		GFF1169	0.51	-0.3
1,175,400	-		GFF1169	0.51	-0.8
1,175,400	-		GFF1169	0.51	-0.0
1,175,400	-		GFF1169	0.51	-0.4
1,175,400	-		GFF1169	0.51	-1.3
1,175,400	-		GFF1169	0.51	-1.6
1,175,400	-		GFF1169	0.51	-0.7
1,175,405	-		GFF1169	0.52	-1.7
1,175,405	-		GFF1169	0.52	+0.8
1,175,405	-		GFF1169	0.52	-1.5
1,175,413	+		GFF1169	0.52	-0.3
1,175,514	+		GFF1169	0.64	-0.3
1,175,527	-		GFF1169	0.65	+0.2
1,175,531	+		GFF1169	0.66	+0.7
1,175,531	+		GFF1169	0.66	+1.4
1,175,538	-		GFF1169	0.66	+0.4
1,175,539	-		GFF1169	0.66	-0.5
1,175,539	-		GFF1169	0.66	-0.0
1,175,558	+		GFF1169	0.69	-1.1
1,175,558	+		GFF1169	0.69	-1.6
1,175,558	+		GFF1169	0.69	-0.2
1,175,558	+		GFF1169	0.69	-0.9
1,175,558	+		GFF1169	0.69	+0.1
1,175,566	-		GFF1169	0.69	-1.4
1,175,566	-		GFF1169	0.69	-0.3
1,175,566	-		GFF1169	0.69	-0.4
1,175,566	-		GFF1169	0.69	+0.9
1,175,566	-		GFF1169	0.69	-0.0
1,175,566	-		GFF1169	0.69	-2.5
1,175,566	-		GFF1169	0.69	-1.2
1,175,566	-		GFF1169	0.69	-0.2
1,175,570	+		GFF1169	0.70	-2.6
1,175,573	+		GFF1169	0.70	-0.4
1,175,573	-		GFF1169	0.70	-0.2
1,175,573	-		GFF1169	0.70	-0.9
1,175,573	-		GFF1169	0.70	+0.3
1,175,573	-		GFF1169	0.70	+1.3
1,175,579	-		GFF1169	0.71	-0.6
1,175,581	-		GFF1169	0.71	-2.0
1,175,581	-		GFF1169	0.71	+0.4
1,175,602	+		GFF1169	0.73	+0.9
1,175,602	+		GFF1169	0.73	-0.9
1,175,628	+		GFF1169	0.76	+1.4
1,175,628	+		GFF1169	0.76	+0.2
1,175,628	+		GFF1169	0.76	-1.3
1,175,628	+		GFF1169	0.76	-1.7
1,175,628	+		GFF1169	0.76	-0.0
1,175,628	+		GFF1169	0.76	+0.3
1,175,628	+		GFF1169	0.76	+0.2
1,175,628	+		GFF1169	0.76	-0.0
1,175,628	+		GFF1169	0.76	-1.4
1,175,628	+		GFF1169	0.76	+0.8
1,175,628	+		GFF1169	0.76	+1.0
1,175,628	+		GFF1169	0.76	-0.8
1,175,628	+		GFF1169	0.76	-0.5
1,175,628	+		GFF1169	0.76	-0.0
1,175,628	+		GFF1169	0.76	-0.1
1,175,628	+		GFF1169	0.76	+1.1
1,175,628	+		GFF1169	0.76	-0.5
1,175,628	+		GFF1169	0.76	-0.2
1,175,628	+		GFF1169	0.76	-0.9
1,175,628	+		GFF1169	0.76	-0.3
1,175,628	+		GFF1169	0.76	-0.4
1,175,628	+		GFF1169	0.76	-0.7
1,175,628	+		GFF1169	0.76	-0.1
1,175,628	+		GFF1169	0.76	+0.4
1,175,628	+		GFF1169	0.76	-0.8
1,175,628	+		GFF1169	0.76	+0.4
1,175,628	+		GFF1169	0.76	-0.1
1,175,628	+		GFF1169	0.76	+0.7
1,175,628	+		GFF1169	0.76	+0.3
1,175,628	+		GFF1169	0.76	-0.8
1,175,628	+		GFF1169	0.76	-2.2
1,175,628	+		GFF1169	0.76	+0.5
1,175,628	+		GFF1169	0.76	-0.4
1,175,628	+		GFF1169	0.76	-1.5
1,175,628	+		GFF1169	0.76	-0.3
1,175,628	+		GFF1169	0.76	+0.2
1,175,628	+		GFF1169	0.76	-1.1
1,175,628	+		GFF1169	0.76	+1.2
1,175,628	+		GFF1169	0.76	-0.3
1,175,628	+		GFF1169	0.76	+1.3
1,175,628	+		GFF1169	0.76	+0.9
1,175,628	+		GFF1169	0.76	-0.3
1,175,633	+		GFF1169	0.77	-0.3
1,175,636	-		GFF1169	0.77	-0.1
1,175,636	-		GFF1169	0.77	-0.4
1,175,636	-		GFF1169	0.77	-1.8
1,175,636	-		GFF1169	0.77	+0.7
1,175,636	-		GFF1169	0.77	-0.1
1,175,636	-		GFF1169	0.77	-1.3
1,175,636	-		GFF1169	0.77	-1.4
1,175,636	-		GFF1169	0.77	-3.1
1,175,636	-		GFF1169	0.77	-1.5
1,175,636	-		GFF1169	0.77	-1.2
1,175,636	-		GFF1169	0.77	+2.5
1,175,636	-		GFF1169	0.77	-0.3
1,175,636	-		GFF1169	0.77	-0.9
1,175,636	-		GFF1169	0.77	-1.0
1,175,636	-		GFF1169	0.77	-0.6
1,175,636	-		GFF1169	0.77	-0.2
1,175,636	-		GFF1169	0.77	-0.0
1,175,636	-		GFF1169	0.77	-0.3
1,175,636	-		GFF1169	0.77	+0.5
1,175,636	-		GFF1169	0.77	-0.5
1,175,636	-		GFF1169	0.77	+1.0
1,175,636	-		GFF1169	0.77	+0.9
1,175,636	-		GFF1169	0.77	-0.8
1,175,636	-		GFF1169	0.77	-0.9
1,175,636	-		GFF1169	0.77	-0.3
1,175,636	-		GFF1169	0.77	-0.2
1,175,636	-		GFF1169	0.77	+0.5
1,175,636	-		GFF1169	0.77	+0.1
1,175,636	-		GFF1169	0.77	+0.9
1,175,636	-		GFF1169	0.77	-0.9
1,175,636	-		GFF1169	0.77	-0.6
1,175,636	-		GFF1169	0.77	-0.3
1,175,636	-		GFF1169	0.77	-1.5
1,175,636	-		GFF1169	0.77	+0.5
1,175,636	-		GFF1169	0.77	-0.1
1,175,636	-		GFF1169	0.77	-0.9
1,175,636	-		GFF1169	0.77	+0.2
1,175,636	-		GFF1169	0.77	-1.6
1,175,636	-		GFF1169	0.77	-1.4
1,175,638	+		GFF1169	0.77	+0.2
1,175,640	+		GFF1169	0.78	+0.7
1,175,642	+		GFF1169	0.78	-0.4
1,175,648	+		GFF1169	0.79	+1.1
1,175,648	-		GFF1169	0.79	-1.4
1,175,648	-		GFF1169	0.79	+1.1
1,175,648	-		GFF1169	0.79	-0.8
1,175,657	+		GFF1169	0.80	+0.4
1,175,657	+		GFF1169	0.80	-1.6
1,175,665	-		GFF1169	0.80	+0.7
1,175,665	-		GFF1169	0.80	-1.3
1,175,665	-		GFF1169	0.80	-1.3
1,175,680	-		GFF1169	0.82	-0.6
1,175,692	+		GFF1169	0.83	-2.6
1,175,697	+		GFF1169	0.84	+0.1
1,175,702	+		GFF1169	0.85	-1.6
1,175,705	-		GFF1169	0.85	-0.3
1,175,706	+		GFF1169	0.85	-0.5
1,175,718	-		GFF1169	0.86	-0.2
1,175,736	+		GFF1169	0.88	-0.1
1,175,736	+		GFF1169	0.88	+0.3
1,175,736	+		GFF1169	0.88	+1.2
1,175,736	+		GFF1169	0.88	-2.2
1,175,736	+		GFF1169	0.88	-1.2
1,175,736	+		GFF1169	0.88	-0.6
1,175,736	+		GFF1169	0.88	-0.7
1,175,736	+		GFF1169	0.88	-0.0
1,175,736	+		GFF1169	0.88	-0.4
1,175,736	+		GFF1169	0.88	+0.6
1,175,741	+		GFF1169	0.89	-0.8
1,175,744	-		GFF1169	0.89	+0.2
1,175,744	-		GFF1169	0.89	-0.9
1,175,744	-		GFF1169	0.89	+0.2
1,175,744	-		GFF1169	0.89	-0.4
1,175,744	-		GFF1169	0.89	+0.2
1,175,744	-		GFF1169	0.89	-1.7
1,175,744	-		GFF1169	0.89	-0.2
1,175,744	-		GFF1169	0.89	+0.8
1,175,744	-		GFF1169	0.89	+0.8
1,175,746	+		GFF1169	0.89	+0.8
1,175,746	+		GFF1169	0.89	-0.7
1,175,746	+		GFF1169	0.89	+0.0
1,175,746	+		GFF1169	0.89	-0.7
1,175,746	+		GFF1169	0.89	+0.3
1,175,746	+		GFF1169	0.89	+0.2
1,175,746	+		GFF1169	0.89	+1.6
1,175,749	-		GFF1169	0.90	+0.7
1,175,749	-		GFF1169	0.90	-1.9
1,175,754	+				-2.2
1,175,754	-				-2.6
1,175,754	-				-0.5
1,175,754	-				-0.5
1,175,754	-				-0.1
1,175,756	+				-0.6
1,175,762	-				-0.3
1,175,766	+				-0.2
1,175,774	+				-0.7
1,175,796	+				+0.4
1,175,806	+				+0.3
1,175,814	-				-0.5
1,175,816	+				-1.4
1,175,816	+				-0.9
1,175,816	+				-1.5
1,175,816	+				-1.7
1,175,824	-				+0.1
1,175,842	-				-0.5
1,175,853	+				-0.4
1,175,857	+				+1.1
1,175,857	+				-0.8
1,175,860	+				+0.8
1,175,862	+				-1.2
1,175,883	-				+0.5
1,175,910	-				-0.1
1,175,910	-				-1.6
1,175,912	+				+0.2
1,175,912	+				-0.6
1,175,922	+				+0.2
1,175,930	-				+1.5
1,175,931	+				-0.6
1,175,942	+				+0.5
1,175,950	-				-0.8
1,175,961	+				-0.4
1,175,969	-				-2.1
1,175,976	+				+0.6
1,175,984	-				+0.2
1,175,984	-				-0.9
1,175,984	-				+1.0
1,175,984	-				+1.0
1,176,008	-				-0.3
1,176,031	-				-0.0
1,176,050	+		GFF1170	0.13	-0.5
1,176,050	+		GFF1170	0.13	-0.9
1,176,050	+		GFF1170	0.13	+0.1
1,176,050	+		GFF1170	0.13	-0.9
1,176,051	-		GFF1170	0.14	-0.6
1,176,056	+		GFF1170	0.15	-0.7
1,176,058	-		GFF1170	0.16	+0.2
1,176,058	-		GFF1170	0.16	-0.1
1,176,058	-		GFF1170	0.16	-0.5
1,176,058	-		GFF1170	0.16	+0.5
1,176,066	-		GFF1170	0.18	-0.4
1,176,070	+		GFF1170	0.19	+0.8
1,176,091	+		GFF1170	0.26	-0.2
1,176,099	-		GFF1170	0.28	+0.5
1,176,100	-		GFF1170	0.28	+0.8
1,176,107	-		GFF1170	0.31	+0.6
1,176,117	-		GFF1170	0.34	+0.1
1,176,130	+		GFF1170	0.38	+0.5
1,176,138	-		GFF1170	0.40	-2.1
1,176,148	+		GFF1170	0.43	-0.9
1,176,153	+		GFF1170	0.45	-2.4
1,176,155	+		GFF1170	0.45	-1.6
1,176,161	-		GFF1170	0.47	-0.9
1,176,161	-		GFF1170	0.47	+0.5
1,176,161	-		GFF1170	0.47	-0.5
1,176,163	+		GFF1170	0.48	+0.7
1,176,171	-		GFF1170	0.50	+0.1
1,176,173	+		GFF1170	0.51	-0.1
1,176,174	+		GFF1170	0.51	-1.2
1,176,182	-		GFF1170	0.53	-0.4
1,176,188	+		GFF1170	0.55	+0.0
1,176,196	+		GFF1170	0.58	+0.2
1,176,196	+		GFF1170	0.58	-0.2
1,176,196	+		GFF1170	0.58	+0.7
1,176,196	+		GFF1170	0.58	-1.4
1,176,196	+		GFF1170	0.58	-0.2
1,176,196	+		GFF1170	0.58	+0.4
1,176,204	-		GFF1170	0.60	+0.1
1,176,204	-		GFF1170	0.60	-1.7
1,176,204	-		GFF1170	0.60	+0.9
1,176,204	-		GFF1170	0.60	+0.1
1,176,204	-		GFF1170	0.60	+0.6
1,176,239	+		GFF1170	0.71	-1.5
1,176,259	+		GFF1170	0.77	-2.6
1,176,308	-				-0.7
1,176,342	-				-0.8
1,176,375	-				-0.1
1,176,377	+				-0.5
1,176,385	-		GFF1171	0.11	-0.5
1,176,415	+		GFF1171	0.18	-1.5
1,176,415	+		GFF1171	0.18	-1.9
1,176,415	+		GFF1171	0.18	+2.6
1,176,415	+		GFF1171	0.18	-0.8
1,176,415	+		GFF1171	0.18	-1.7
1,176,423	-		GFF1171	0.19	+0.7
1,176,434	-		GFF1171	0.22	+0.4
1,176,482	-		GFF1171	0.32	-2.2
1,176,504	+		GFF1171	0.36	-0.0
1,176,524	+		GFF1171	0.41	+0.6
1,176,529	+		GFF1171	0.42	-0.4
1,176,532	-		GFF1171	0.42	+1.5
1,176,534	-		GFF1171	0.43	-0.6
1,176,541	+		GFF1171	0.44	-0.3
1,176,543	-		GFF1171	0.45	-1.4
1,176,569	+		GFF1171	0.50	+0.6
1,176,574	+		GFF1171	0.51	+0.3
1,176,594	-		GFF1171	0.55	-0.3
1,176,604	-		GFF1171	0.57	-1.8
1,176,612	+		GFF1171	0.59	-0.5
1,176,612	+		GFF1171	0.59	-0.6
1,176,612	+		GFF1171	0.59	+0.8
1,176,612	+		GFF1171	0.59	-0.0
1,176,620	-		GFF1171	0.61	-0.2
1,176,620	-		GFF1171	0.61	-0.4
1,176,620	-		GFF1171	0.61	-0.9
1,176,620	-		GFF1171	0.61	-0.2
1,176,622	+		GFF1171	0.61	+0.2
1,176,631	+		GFF1171	0.63	-1.3
1,176,631	-		GFF1171	0.63	-1.9
1,176,638	+		GFF1171	0.65	-0.0
1,176,638	+		GFF1171	0.65	-0.8
1,176,638	+		GFF1171	0.65	-2.1
1,176,638	+		GFF1171	0.65	-2.5
1,176,639	-		GFF1171	0.65	-0.1
1,176,641	-		GFF1171	0.65	-1.3
1,176,646	-		GFF1171	0.66	-1.7
1,176,646	-		GFF1171	0.66	-0.0
1,176,648	+		GFF1171	0.67	-1.3
1,176,668	-		GFF1171	0.71	+0.5
1,176,691	-		GFF1171	0.76	-0.6
1,176,693	+		GFF1171	0.76	+0.9
1,176,703	+		GFF1171	0.78	-0.7
1,176,708	+		GFF1171	0.79	-1.6
1,176,708	+		GFF1171	0.79	-0.4
1,176,708	+		GFF1171	0.79	-0.8
1,176,711	-		GFF1171	0.80	-2.5
1,176,716	-		GFF1171	0.81	-0.4
1,176,716	-		GFF1171	0.81	-2.0
1,176,730	+		GFF1171	0.84	-0.3
1,176,750	+		GFF1171	0.88	-0.1
1,176,752	+		GFF1171	0.89	+0.6
1,176,762	+				-0.9
1,176,762	+				-0.0
1,176,762	+				-0.5
1,176,762	+				-0.8
1,176,762	+				-1.5
1,176,762	+				-0.8
1,176,770	-				-2.2
1,176,770	-				-0.7
1,176,770	-				-0.4
1,176,770	-				+0.1
1,176,770	-				-0.0
1,176,770	-				+0.1
1,176,770	-				-0.5
1,176,770	-				-0.6
1,176,770	-				-1.1
1,176,770	-				-1.6
1,176,787	+				+1.6
1,176,792	+				+0.6
1,176,809	+				+0.0
1,176,817	-				-1.0
1,176,818	+				-1.8
1,176,835	-				-0.2
1,176,836	-				-1.9
1,176,841	-				+0.4
1,176,872	-				-1.2
1,176,881	+				+0.1
1,176,910	-		GFF1172	0.10	-1.1
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1,177,764	-				-1.5
1,177,764	-				+0.0
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1,177,764	-				+0.2
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1,177,764	-				+0.9
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