Strain Fitness in Sphingobium sp. HT1-2 around GFF113

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
103,058	-		GFF111	0.63	+0.3
103,063	+		GFF111	0.64	-0.9
103,071	-		GFF111	0.65	+0.1
103,086	+		GFF111	0.68	-0.1
103,141	+		GFF111	0.78	-1.2
103,141	+		GFF111	0.78	-1.4
103,146	+		GFF111	0.79	-1.2
103,149	-		GFF111	0.80	-0.2
103,154	-		GFF111	0.80	-1.8
103,176	+		GFF111	0.85	-0.4
103,176	+		GFF111	0.85	+0.6
103,181	+		GFF111	0.85	+0.2
103,184	-		GFF111	0.86	+0.6
103,184	-		GFF111	0.86	+0.7
103,184	-		GFF111	0.86	-0.3
103,185	+		GFF111	0.86	+0.3
103,193	-		GFF111	0.88	-0.4
103,195	+		GFF111	0.88	+0.4
103,203	-		GFF111	0.90	+1.2
103,207	+				+0.1
103,220	-				-0.5
103,222	+				-1.2
103,222	+				-0.1
103,230	-				-0.2
103,230	-				-0.1
103,230	-				-1.3
103,235	+				-0.2
103,259	+				-1.2
103,293	+				-0.9
103,312	+				-0.5
103,312	+				-0.3
103,312	+				-0.5
103,312	+				+0.9
103,312	+				+1.4
103,312	+				-1.9
103,312	+				-0.3
103,312	+				+1.0
103,312	+				-0.3
103,343	+				-2.1
103,343	+				-0.7
103,343	+				-0.3
103,343	+				+1.4
103,356	+				+1.0
103,385	+				-1.2
104,009	+				-0.7
104,014	+				+0.7
104,046	+				-1.0
104,055	+				-2.7
104,056	+				-0.3
104,056	+				-1.2
104,062	-				+0.5
104,064	+				-1.1
104,072	-				+0.1
104,072	-				+0.6
104,074	+				-2.3
104,074	+				-0.1
104,074	+				-0.8
104,074	+				-0.9
104,082	-				-0.5
104,084	+				-1.6
104,084	+				+0.0
104,097	-				+1.1
104,114	-				+0.2
104,123	+				+0.5
104,125	+				-0.7
104,125	+				-2.0
104,131	-				-0.4
104,131	-				-1.4
104,133	-				-0.0
104,141	-				-0.8
104,163	+		GFF113	0.11	-2.6
104,164	-		GFF113	0.12	+0.2
104,164	-		GFF113	0.12	+0.9
104,205	-		GFF113	0.15	-0.9
104,236	-		GFF113	0.18	-0.8
104,275	+		GFF113	0.22	-0.5
104,280	+		GFF113	0.22	+0.4
104,280	+		GFF113	0.22	+0.3
104,283	-		GFF113	0.23	-0.4
104,288	-		GFF113	0.23	+1.5
104,288	-		GFF113	0.23	-0.0
104,288	-		GFF113	0.23	-1.6
104,288	-		GFF113	0.23	-1.6
104,288	-		GFF113	0.23	+0.8
104,288	-		GFF113	0.23	-1.0
104,299	+		GFF113	0.24	-0.5
104,299	+		GFF113	0.24	-2.3
104,307	-		GFF113	0.25	+0.7
104,307	-		GFF113	0.25	+0.6
104,307	-		GFF113	0.25	+0.1
104,307	-		GFF113	0.25	-0.6
104,342	-		GFF113	0.28	+0.0
104,356	+		GFF113	0.29	-1.3
104,356	+		GFF113	0.29	+0.8
104,356	+		GFF113	0.29	-0.4
104,356	+		GFF113	0.29	+1.6
104,359	+		GFF113	0.30	-0.4
104,364	-		GFF113	0.30	-1.2
104,364	-		GFF113	0.30	+0.8
104,366	+		GFF113	0.30	-0.9
104,416	+		GFF113	0.35	-0.0
104,453	+		GFF113	0.38	+1.0
104,460	-		GFF113	0.39	-1.2
104,461	-		GFF113	0.39	-1.9
104,465	-		GFF113	0.39	+0.2
104,465	-		GFF113	0.39	+1.3
104,478	-		GFF113	0.41	-0.7
104,531	-		GFF113	0.45	-0.8
104,583	+		GFF113	0.50	-0.2
104,583	+		GFF113	0.50	+1.8
104,583	+		GFF113	0.50	+0.9
104,583	+		GFF113	0.50	+1.4
104,591	-		GFF113	0.51	+0.6
104,591	-		GFF113	0.51	-1.6
104,598	+		GFF113	0.52	-1.5
104,598	+		GFF113	0.52	-0.1
104,602	+		GFF113	0.52	+1.0
104,602	+		GFF113	0.52	-0.4
104,625	+		GFF113	0.54	-1.7
104,633	-		GFF113	0.55	+0.7
104,633	-		GFF113	0.55	+0.2
104,652	-		GFF113	0.57	+0.3
104,676	+		GFF113	0.59	+0.1
104,684	-		GFF113	0.60	+0.6
104,686	+		GFF113	0.60	-0.2
104,686	+		GFF113	0.60	-1.7
104,686	+		GFF113	0.60	-1.4
104,686	+		GFF113	0.60	-0.2
104,691	+		GFF113	0.60	-0.1
104,693	+		GFF113	0.60	+0.5
104,694	-		GFF113	0.60	-0.5
104,694	-		GFF113	0.60	-0.2
104,701	-		GFF113	0.61	-0.2
104,701	-		GFF113	0.61	-1.6
104,733	+		GFF113	0.64	-1.8
104,733	+		GFF113	0.64	+0.8
104,733	+		GFF113	0.64	+1.5
104,736	-		GFF113	0.64	-1.8
104,740	+		GFF113	0.65	-0.4
104,741	-		GFF113	0.65	-1.9
104,741	-		GFF113	0.65	-1.3
104,741	-		GFF113	0.65	+0.6
104,741	-		GFF113	0.65	+0.2
104,741	-		GFF113	0.65	-0.9
104,741	-		GFF113	0.65	+1.1
104,748	-		GFF113	0.65	+0.4
104,764	+		GFF113	0.67	-1.3
104,782	-		GFF113	0.69	+0.5
104,806	+		GFF113	0.71	-1.5
104,806	+		GFF113	0.71	+0.7
104,806	+		GFF113	0.71	+0.0
104,807	+		GFF113	0.71	-0.1
104,814	-		GFF113	0.72	+0.6
104,816	+		GFF113	0.72	+0.7
104,816	+		GFF113	0.72	+1.0
104,816	+		GFF113	0.72	+0.3
104,824	-		GFF113	0.72	-1.1
104,851	-		GFF113	0.75	-0.6
104,852	+		GFF113	0.75	-0.4
104,880	+		GFF113	0.78	+1.3
104,880	+		GFF113	0.78	-0.1
104,883	-		GFF113	0.78	-1.1
104,888	-		GFF113	0.78	-2.0
104,888	-		GFF113	0.78	+0.3
104,888	-		GFF113	0.78	-0.1
104,905	+		GFF113	0.80	-1.6
104,910	+		GFF113	0.80	+0.3
104,910	+		GFF113	0.80	-1.0
104,913	-		GFF113	0.81	-0.9
104,918	-		GFF113	0.81	-0.5
104,941	-		GFF113	0.83	-0.5
104,980	+		GFF113	0.87	-1.0
104,980	+		GFF113	0.87	+1.0
104,980	+		GFF113	0.87	-0.7
104,980	+		GFF113	0.87	+0.2
104,988	-		GFF113	0.88	+0.8
105,010	-		GFF113	0.90	+0.4
105,022	+				+0.9
105,048	+				-0.6
105,049	-				-1.0
105,053	+				+0.4
105,053	+				+0.2
105,081	+				-1.3
105,081	+				-0.2
105,081	+				-2.2
105,081	+				-0.1
105,081	-				+0.4
105,089	-				+0.6
105,123	+				-0.7
105,131	+				-0.5
105,131	-				+0.0
105,136	+				+0.8
105,136	+				-0.8
105,139	-				-1.3
105,139	-				+0.4
105,176	+				-1.0
105,176	+				-0.9
105,176	+				-0.9
105,176	+				-0.4
105,184	-				-0.9
105,184	-				-0.3
105,184	-				-0.6
105,184	-				+0.1
105,184	-				-0.1
105,184	-				-2.2
105,184	-				-1.4
105,202	+				-0.7
105,212	+				+0.9
105,221	+				-0.5
105,237	+		GFF114	0.11	+0.2
105,259	+		GFF114	0.13	-1.3
105,260	+		GFF114	0.13	-0.6
105,260	+		GFF114	0.13	+0.3
105,260	+		GFF114	0.13	-2.3
105,260	+		GFF114	0.13	-0.9
105,260	+		GFF114	0.13	-4.1
105,267	-		GFF114	0.14	-1.1
105,268	-		GFF114	0.14	+1.3
105,276	+		GFF114	0.15	+0.0
105,286	+		GFF114	0.16	+0.4
105,287	-		GFF114	0.16	+0.6
105,292	-		GFF114	0.17	-0.4
105,292	-		GFF114	0.17	-1.4
105,329	+		GFF114	0.21	+0.5
105,329	+		GFF114	0.21	+0.3
105,334	+		GFF114	0.22	+0.5
105,337	-		GFF114	0.22	+0.8
105,337	-		GFF114	0.22	-0.4
105,350	-		GFF114	0.24	-1.0
105,350	-		GFF114	0.24	-1.4
105,360	-		GFF114	0.25	+1.0
105,367	-		GFF114	0.25	-0.0
105,367	-		GFF114	0.25	-0.9
105,400	+		GFF114	0.29	+0.9
105,433	-		GFF114	0.33	+0.4
105,433	-		GFF114	0.33	-1.3
105,440	+		GFF114	0.34	-0.8
105,441	-		GFF114	0.34	-0.4
105,453	+		GFF114	0.35	-0.9
105,461	-		GFF114	0.36	-0.8
105,467	-		GFF114	0.37	-2.0
105,476	+		GFF114	0.38	+0.3
105,491	+		GFF114	0.40	-0.3
105,491	+		GFF114	0.40	-2.3
105,491	+		GFF114	0.40	-0.5
105,496	+		GFF114	0.40	-1.5
105,512	+		GFF114	0.42	-2.2
105,512	+		GFF114	0.42	-1.3
105,512	+		GFF114	0.42	+1.1
105,512	+		GFF114	0.42	-0.3
105,512	+		GFF114	0.42	-0.1
105,512	+		GFF114	0.42	-1.1
105,520	-		GFF114	0.43	+1.1
105,520	-		GFF114	0.43	-1.3
105,520	-		GFF114	0.43	-0.3
105,520	-		GFF114	0.43	+0.1
105,526	-		GFF114	0.44	-2.5
105,534	-		GFF114	0.44	+0.7
105,547	+		GFF114	0.46	-0.1
105,547	+		GFF114	0.46	-0.6
105,555	-		GFF114	0.47	+0.0
105,555	-		GFF114	0.47	-1.2
105,555	-		GFF114	0.47	-2.9
105,555	-		GFF114	0.47	+0.7
105,564	+		GFF114	0.48	+0.0
105,601	-		GFF114	0.52	-1.1
105,603	+		GFF114	0.52	+0.1
105,603	+		GFF114	0.52	-1.5
105,611	-		GFF114	0.53	-1.1
105,611	-		GFF114	0.53	+0.5
105,613	+		GFF114	0.53	-1.5
105,613	+		GFF114	0.53	+0.3
105,631	+		GFF114	0.56	-1.5
105,639	+		GFF114	0.56	+0.3
105,639	-		GFF114	0.56	+0.7
105,656	+		GFF114	0.58	+0.0
105,669	+		GFF114	0.60	-1.4
105,669	+		GFF114	0.60	+0.2
105,669	+		GFF114	0.60	-1.4
105,669	+		GFF114	0.60	+0.5
105,669	+		GFF114	0.60	+0.7
105,677	-		GFF114	0.61	-0.7
105,677	-		GFF114	0.61	-0.6
105,677	-		GFF114	0.61	+0.3
105,682	+		GFF114	0.61	+0.7
105,689	+		GFF114	0.62	-0.2
105,689	+		GFF114	0.62	-0.1
105,689	+		GFF114	0.62	-0.4
105,692	-		GFF114	0.62	-2.7
105,694	+		GFF114	0.63	-1.6
105,697	-		GFF114	0.63	-0.2
105,697	-		GFF114	0.63	+0.3
105,697	-		GFF114	0.63	-1.4
105,697	-		GFF114	0.63	-1.1
105,699	-		GFF114	0.63	-1.0
105,710	-		GFF114	0.65	+1.1
105,715	-		GFF114	0.65	-0.2
105,722	+		GFF114	0.66	-1.2
105,727	+		GFF114	0.66	-0.2
105,735	-		GFF114	0.67	-0.7
105,737	-		GFF114	0.68	-0.4
105,739	-		GFF114	0.68	-1.3
105,739	-		GFF114	0.68	-1.1
105,739	-		GFF114	0.68	-2.6
105,749	+		GFF114	0.69	-2.3
105,749	+		GFF114	0.69	+0.0
105,770	+		GFF114	0.71	+0.7
105,778	-		GFF114	0.72	-0.1
105,780	+		GFF114	0.72	-0.0
105,788	-		GFF114	0.73	+1.2
105,793	-		GFF114	0.74	+0.5
105,793	-		GFF114	0.74	-1.4
105,798	-		GFF114	0.75	+0.1
105,808	-		GFF114	0.76	+2.3
105,821	-		GFF114	0.77	+0.7
105,835	+		GFF114	0.79	+0.0
105,843	-		GFF114	0.80	-1.4
105,865	-		GFF114	0.82	-1.3
105,865	-		GFF114	0.82	-1.0
105,870	-		GFF114	0.83	+0.3
105,914	-		GFF114	0.88	-1.3
105,916	+		GFF114	0.88	+0.3
105,919	-		GFF114	0.88	-0.6
105,924	-		GFF114	0.89	+0.2
105,932	-		GFF114	0.90	-0.5
105,932	-		GFF114	0.90	-0.7
105,954	+				+1.4
105,973	+				-0.3
105,973	+				+0.7
105,974	+				-0.2
105,981	-				-0.1
105,982	-				-0.3
105,982	-				-0.8
106,031	-				-1.0
106,101	+				+0.2
106,118	+				-0.2
106,120	+				-0.6