Strain Fitness in Sphingobium sp. HT1-2 around GFF1129

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,132,344	+				-1.3
1,132,396	-				-1.2
1,132,440	-		GFF1128	0.12	-0.9
1,132,440	-		GFF1128	0.12	+0.2
1,132,442	+		GFF1128	0.12	+0.3
1,132,442	+		GFF1128	0.12	+1.1
1,132,451	+		GFF1128	0.13	+0.6
1,132,451	+		GFF1128	0.13	-1.1
1,132,477	+		GFF1128	0.16	+0.2
1,132,477	+		GFF1128	0.16	-0.9
1,132,490	+		GFF1128	0.17	-0.5
1,132,495	+		GFF1128	0.17	+0.9
1,132,498	-		GFF1128	0.18	-0.8
1,132,508	+		GFF1128	0.19	+0.1
1,132,510	+		GFF1128	0.19	-1.0
1,132,530	+		GFF1128	0.21	+0.6
1,132,533	-		GFF1128	0.21	-1.1
1,132,571	+		GFF1128	0.25	-0.4
1,132,601	+		GFF1128	0.28	-0.8
1,132,606	+		GFF1128	0.28	+0.0
1,132,606	+		GFF1128	0.28	-0.1
1,132,614	-		GFF1128	0.29	+0.0
1,132,614	-		GFF1128	0.29	-0.4
1,132,624	+		GFF1128	0.30	-1.7
1,132,624	+		GFF1128	0.30	+0.9
1,132,624	+		GFF1128	0.30	+0.5
1,132,632	-		GFF1128	0.31	-0.5
1,132,647	+		GFF1128	0.32	-1.8
1,132,652	+		GFF1128	0.33	-0.5
1,132,655	-		GFF1128	0.33	+1.2
1,132,659	+		GFF1128	0.34	-1.1
1,132,659	+		GFF1128	0.34	+0.2
1,132,659	+		GFF1128	0.34	-0.8
1,132,667	-		GFF1128	0.34	-1.2
1,132,669	-		GFF1128	0.35	+0.1
1,132,673	-		GFF1128	0.35	-0.2
1,132,685	+		GFF1128	0.36	+0.1
1,132,692	-		GFF1128	0.37	-0.2
1,132,692	-		GFF1128	0.37	+0.5
1,132,693	-		GFF1128	0.37	-0.5
1,132,695	+		GFF1128	0.37	-1.0
1,132,720	+		GFF1128	0.39	-0.1
1,132,722	+		GFF1128	0.40	+0.1
1,132,722	+		GFF1128	0.40	-1.1
1,132,739	-		GFF1128	0.41	-1.5
1,132,739	-		GFF1128	0.41	-0.4
1,132,739	-		GFF1128	0.41	+0.6
1,132,765	-		GFF1128	0.44	-0.6
1,132,823	+		GFF1128	0.50	-1.1
1,132,833	+		GFF1128	0.51	-0.4
1,132,865	+		GFF1128	0.54	-0.7
1,132,889	-		GFF1128	0.56	+0.8
1,132,896	+		GFF1128	0.57	+0.4
1,132,898	-		GFF1128	0.57	-0.6
1,132,904	-		GFF1128	0.57	-1.4
1,132,915	+		GFF1128	0.59	-2.0
1,132,918	-		GFF1128	0.59	-1.2
1,132,918	-		GFF1128	0.59	-0.5
1,132,950	+		GFF1128	0.62	-1.7
1,132,950	+		GFF1128	0.62	-0.3
1,132,987	-		GFF1128	0.66	-0.1
1,132,987	-		GFF1128	0.66	+0.6
1,132,987	-		GFF1128	0.66	+0.3
1,132,987	-		GFF1128	0.66	-2.5
1,132,996	+		GFF1128	0.66	+0.5
1,133,042	+		GFF1128	0.71	-0.1
1,133,052	-		GFF1128	0.72	+0.4
1,133,059	+		GFF1128	0.73	-0.3
1,133,059	+		GFF1128	0.73	-1.3
1,133,059	+		GFF1128	0.73	+0.3
1,133,059	+		GFF1128	0.73	+0.1
1,133,071	+		GFF1128	0.74	-0.2
1,133,079	-		GFF1128	0.75	+0.1
1,133,085	-		GFF1128	0.75	-1.3
1,133,113	-		GFF1128	0.78	+0.5
1,133,113	-		GFF1128	0.78	-0.1
1,133,113	-		GFF1128	0.78	-0.9
1,133,123	+		GFF1128	0.79	+1.0
1,133,138	+		GFF1128	0.80	-0.6
1,133,144	-		GFF1128	0.81	-1.0
1,133,144	-		GFF1128	0.81	+0.7
1,133,146	+		GFF1128	0.81	+0.5
1,133,154	-		GFF1128	0.82	+0.3
1,133,154	-		GFF1128	0.82	+0.7
1,133,166	+		GFF1128	0.83	-1.9
1,133,202	-		GFF1128	0.87	-0.4
1,133,205	+		GFF1128	0.87	+1.4
1,133,205	+		GFF1128	0.87	+1.4
1,133,205	+		GFF1128	0.87	-0.1
1,133,205	+		GFF1128	0.87	+0.9
1,133,205	+		GFF1128	0.87	-0.8
1,133,205	+		GFF1128	0.87	-1.3
1,133,205	+		GFF1128	0.87	+0.7
1,133,205	+		GFF1128	0.87	-1.0
1,133,205	+		GFF1128	0.87	-1.2
1,133,205	+		GFF1128	0.87	+0.9
1,133,213	-		GFF1128	0.88	-1.4
1,133,213	-		GFF1128	0.88	+0.5
1,133,213	-		GFF1128	0.88	-0.2
1,133,213	-		GFF1128	0.88	+0.0
1,133,213	-		GFF1128	0.88	-0.5
1,133,213	-		GFF1128	0.88	-1.5
1,133,213	-		GFF1128	0.88	-1.3
1,133,237	+				+0.3
1,133,237	+				-0.7
1,133,241	+				-1.4
1,133,241	+				-2.4
1,133,242	+				+0.1
1,133,249	-				+0.8
1,133,250	-				-0.8
1,133,259	+				-1.2
1,133,259	+				+0.6
1,133,267	-				-0.0
1,133,267	-				+0.2
1,133,267	-				+0.3
1,133,275	-				+1.1
1,133,296	+				+1.2
1,133,303	+				-1.0
1,133,303	+				+0.4
1,133,317	-				+1.4
1,133,319	+				+0.0
1,133,319	+				+0.9
1,133,331	+				-0.7
1,133,337	-				+0.7
1,133,344	-				-1.7
1,133,349	-				-0.7
1,133,366	-				+0.2
1,133,380	+				+0.4
1,133,383	-				+1.0
1,133,383	-				-0.2
1,133,389	+				+0.0
1,133,420	-				-0.3
1,133,442	-				-0.6
1,133,479	-		GFF1129	0.13	+0.3
1,133,479	-		GFF1129	0.13	+0.4
1,133,479	-		GFF1129	0.13	-0.9
1,133,483	+		GFF1129	0.13	-0.6
1,133,483	+		GFF1129	0.13	+0.3
1,133,483	+		GFF1129	0.13	-3.0
1,133,483	+		GFF1129	0.13	-0.7
1,133,483	+		GFF1129	0.13	-1.6
1,133,484	-		GFF1129	0.13	-2.0
1,133,484	-		GFF1129	0.13	+0.1
1,133,491	-		GFF1129	0.14	-0.1
1,133,491	-		GFF1129	0.14	+0.3
1,133,491	-		GFF1129	0.14	+0.7
1,133,520	+		GFF1129	0.16	-0.4
1,133,542	-		GFF1129	0.18	+0.1
1,133,561	+		GFF1129	0.20	-0.8
1,133,561	+		GFF1129	0.20	+0.4
1,133,561	+		GFF1129	0.20	+0.0
1,133,571	+		GFF1129	0.21	-0.2
1,133,579	+		GFF1129	0.22	+0.2
1,133,579	-		GFF1129	0.22	-1.0
1,133,579	-		GFF1129	0.22	+0.3
1,133,579	-		GFF1129	0.22	-0.3
1,133,588	-		GFF1129	0.22	-0.3
1,133,588	-		GFF1129	0.22	+1.0
1,133,589	-		GFF1129	0.23	+1.0
1,133,590	+		GFF1129	0.23	-0.3
1,133,593	+		GFF1129	0.23	-0.0
1,133,595	+		GFF1129	0.23	-0.1
1,133,601	-		GFF1129	0.24	-0.2
1,133,601	-		GFF1129	0.24	-2.2
1,133,601	-		GFF1129	0.24	-1.3
1,133,603	+		GFF1129	0.24	+0.4
1,133,603	+		GFF1129	0.24	-1.2
1,133,603	+		GFF1129	0.24	+0.2
1,133,603	+		GFF1129	0.24	-1.1
1,133,603	+		GFF1129	0.24	+0.3
1,133,603	+		GFF1129	0.24	+0.3
1,133,603	+		GFF1129	0.24	-1.1
1,133,603	+		GFF1129	0.24	-0.9
1,133,603	+		GFF1129	0.24	+0.9
1,133,603	+		GFF1129	0.24	-0.2
1,133,603	+		GFF1129	0.24	-0.8
1,133,603	+		GFF1129	0.24	-0.3
1,133,603	+		GFF1129	0.24	+0.4
1,133,603	+		GFF1129	0.24	-0.7
1,133,603	+		GFF1129	0.24	+1.2
1,133,603	+		GFF1129	0.24	+0.1
1,133,603	+		GFF1129	0.24	-0.0
1,133,603	+		GFF1129	0.24	-3.0
1,133,603	+		GFF1129	0.24	+0.3
1,133,603	+		GFF1129	0.24	-0.4
1,133,605	+		GFF1129	0.24	-0.4
1,133,605	+		GFF1129	0.24	-0.5
1,133,605	+		GFF1129	0.24	+0.4
1,133,605	+		GFF1129	0.24	-0.8
1,133,605	+		GFF1129	0.24	-0.5
1,133,605	+		GFF1129	0.24	+0.7
1,133,607	+		GFF1129	0.24	+0.0
1,133,611	-		GFF1129	0.25	+0.3
1,133,611	-		GFF1129	0.25	-1.4
1,133,611	-		GFF1129	0.25	+0.8
1,133,611	-		GFF1129	0.25	+0.2
1,133,611	-		GFF1129	0.25	-1.2
1,133,611	-		GFF1129	0.25	+0.6
1,133,611	-		GFF1129	0.25	+1.3
1,133,611	-		GFF1129	0.25	-0.4
1,133,611	-		GFF1129	0.25	-2.0
1,133,611	-		GFF1129	0.25	-1.7
1,133,611	-		GFF1129	0.25	-1.4
1,133,613	-		GFF1129	0.25	-0.7
1,133,613	-		GFF1129	0.25	-0.4
1,133,613	-		GFF1129	0.25	-2.4
1,133,614	+		GFF1129	0.25	+1.4
1,133,614	+		GFF1129	0.25	+0.1
1,133,615	+		GFF1129	0.25	+0.9
1,133,622	-		GFF1129	0.26	-0.0
1,133,622	-		GFF1129	0.26	-0.2
1,133,622	-		GFF1129	0.26	+0.4
1,133,622	-		GFF1129	0.26	-0.3
1,133,623	-		GFF1129	0.26	+0.2
1,133,629	+		GFF1129	0.26	+0.5
1,133,637	-		GFF1129	0.27	-1.2
1,133,637	-		GFF1129	0.27	-2.6
1,133,641	+		GFF1129	0.27	-0.6
1,133,676	+		GFF1129	0.30	-1.4
1,133,676	+		GFF1129	0.30	+0.4
1,133,676	+		GFF1129	0.30	+0.3
1,133,676	+		GFF1129	0.30	-1.5
1,133,684	-		GFF1129	0.31	+0.2
1,133,691	+		GFF1129	0.32	+0.7
1,133,691	+		GFF1129	0.32	+0.6
1,133,708	+		GFF1129	0.33	+1.3
1,133,746	+		GFF1129	0.37	-0.8
1,133,760	+		GFF1129	0.38	+0.0
1,133,768	-		GFF1129	0.38	+0.4
1,133,768	-		GFF1129	0.38	+0.3
1,133,768	-		GFF1129	0.38	-0.2
1,133,770	+		GFF1129	0.39	-1.2
1,133,770	+		GFF1129	0.39	-0.9
1,133,778	-		GFF1129	0.39	+0.4
1,133,809	+		GFF1129	0.42	+0.3
1,133,822	-		GFF1129	0.43	-0.9
1,133,827	-		GFF1129	0.44	-1.7
1,133,830	+		GFF1129	0.44	+0.2
1,133,842	+		GFF1129	0.45	+0.3
1,133,844	+		GFF1129	0.45	-0.1
1,133,845	-		GFF1129	0.45	+0.3
1,133,849	+		GFF1129	0.46	-1.1
1,133,863	-		GFF1129	0.47	-0.4
1,133,870	+		GFF1129	0.48	+1.4
1,133,895	-		GFF1129	0.50	-1.1
1,133,895	-		GFF1129	0.50	-0.2
1,133,895	-		GFF1129	0.50	-1.5
1,133,904	+		GFF1129	0.51	+1.2
1,133,913	+		GFF1129	0.51	-0.5
1,133,920	+		GFF1129	0.52	-0.5
1,133,920	+		GFF1129	0.52	-0.6
1,133,928	-		GFF1129	0.53	+0.6
1,133,928	-		GFF1129	0.53	-2.2
1,133,938	-		GFF1129	0.54	-0.2
1,133,943	-		GFF1129	0.54	+0.9
1,133,955	+		GFF1129	0.55	-0.3
1,133,958	+		GFF1129	0.55	-1.1
1,133,965	+		GFF1129	0.56	-1.9
1,133,965	+		GFF1129	0.56	-0.6
1,133,968	-		GFF1129	0.56	+0.3
1,133,986	+		GFF1129	0.58	+1.3
1,133,990	+		GFF1129	0.58	-0.7
1,133,990	+		GFF1129	0.58	-1.6
1,133,990	+		GFF1129	0.58	-0.5
1,133,990	+		GFF1129	0.58	-1.0
1,133,998	-		GFF1129	0.59	+0.1
1,133,998	-		GFF1129	0.59	-0.4
1,134,006	+		GFF1129	0.60	-1.0
1,134,006	+		GFF1129	0.60	+0.2
1,134,014	-		GFF1129	0.60	-0.0
1,134,014	-		GFF1129	0.60	+0.3
1,134,026	+		GFF1129	0.61	+0.4
1,134,026	+		GFF1129	0.61	+0.9
1,134,026	+		GFF1129	0.61	-1.4
1,134,026	+		GFF1129	0.61	-1.5
1,134,026	+		GFF1129	0.61	+1.0
1,134,026	+		GFF1129	0.61	-0.8
1,134,026	+		GFF1129	0.61	-0.4
1,134,034	-		GFF1129	0.62	-0.8
1,134,034	-		GFF1129	0.62	+0.2
1,134,034	-		GFF1129	0.62	+0.8
1,134,034	-		GFF1129	0.62	-0.7
1,134,034	-		GFF1129	0.62	-0.0
1,134,034	-		GFF1129	0.62	+0.3
1,134,036	+		GFF1129	0.62	+1.0
1,134,044	-		GFF1129	0.63	-0.1
1,134,044	-		GFF1129	0.63	-0.4
1,134,044	-		GFF1129	0.63	+0.3
1,134,060	-		GFF1129	0.64	-2.0
1,134,067	-		GFF1129	0.65	+0.7
1,134,093	-		GFF1129	0.67	+0.2
1,134,095	+		GFF1129	0.68	+0.4
1,134,111	-		GFF1129	0.69	+0.5
1,134,128	+		GFF1129	0.70	-0.4
1,134,128	+		GFF1129	0.70	+0.8
1,134,128	+		GFF1129	0.70	+1.3
1,134,136	-		GFF1129	0.71	+0.8
1,134,168	+		GFF1129	0.74	-0.3
1,134,168	+		GFF1129	0.74	+0.4
1,134,173	+		GFF1129	0.74	+0.1
1,134,173	+		GFF1129	0.74	-1.0
1,134,181	-		GFF1129	0.75	+0.9
1,134,181	-		GFF1129	0.75	-0.0
1,134,181	-		GFF1129	0.75	+0.2
1,134,195	-		GFF1129	0.76	+1.0
1,134,200	+		GFF1129	0.77	-0.7
1,134,208	-		GFF1129	0.78	-1.2
1,134,208	-		GFF1129	0.78	+0.7
1,134,228	-		GFF1129	0.79	-0.2
1,134,269	-		GFF1129	0.83	-0.2
1,134,311	+		GFF1129	0.87	-0.2
1,134,316	+		GFF1129	0.87	+0.0
1,134,316	+		GFF1129	0.87	+0.4
1,134,319	-		GFF1129	0.87	-0.7
1,134,321	+		GFF1129	0.88	-1.5
1,134,335	+		GFF1129	0.89	-0.2
1,134,343	-		GFF1129	0.90	+0.3
1,134,365	-				+0.0
1,134,395	+				-0.2
1,134,400	+				+0.8
1,134,403	-				-2.9
1,134,403	-				+0.3
1,134,403	-				-0.0
1,134,410	-				-1.5
1,134,411	+				-0.1
1,134,412	+				+1.2
1,134,412	+				-1.7
1,134,419	-				+0.3
1,134,420	-				+0.5
1,134,420	-				+0.6
1,134,434	+				-0.2
1,134,438	+				+0.6
1,134,444	+				-0.0
1,134,453	-				-0.4
1,134,467	-				-0.3
1,134,488	+				-0.2
1,134,490	+				-1.3
1,134,490	+				+0.5
1,134,490	+				+1.1
1,134,490	+				-0.3
1,134,498	-				-0.5
1,134,500	+				-0.2
1,134,503	+				+0.1
1,134,513	+				-0.7
1,134,513	+				-0.0
1,134,526	-				+0.1
1,134,532	+				+1.6
1,134,538	+				+0.3
1,134,540	-				+0.4
1,134,551	+				+0.4
1,134,554	-				-0.2
1,134,559	-				-1.1
1,134,564	+				+0.6
1,134,564	-				-0.6
1,134,569	+				-1.0
1,134,573	+				+0.2
1,134,573	+				+0.1
1,134,574	+				+1.0
1,134,577	-				-1.0
1,134,577	-				-1.7
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