Strain Fitness in Sphingobium sp. HT1-2 around GFF1118

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,119,754	-		GFF1116	0.76	-0.0
1,119,754	-		GFF1116	0.76	-0.3
1,119,766	+		GFF1116	0.77	-0.2
1,119,769	+		GFF1116	0.77	+0.2
1,119,772	+		GFF1116	0.77	-0.1
1,119,782	-		GFF1116	0.78	+0.9
1,119,787	-		GFF1116	0.79	-0.6
1,119,806	+		GFF1116	0.81	-0.6
1,119,806	+		GFF1116	0.81	-0.3
1,119,812	-		GFF1116	0.81	-0.3
1,119,812	-		GFF1116	0.81	-0.4
1,119,841	+		GFF1116	0.84	+0.1
1,119,847	-		GFF1116	0.85	-0.3
1,119,848	-		GFF1116	0.85	-0.8
1,119,849	-		GFF1116	0.85	-0.3
1,119,851	+		GFF1116	0.85	+0.1
1,119,876	+		GFF1116	0.88	-0.8
1,119,898	-				+0.0
1,119,900	+				-0.8
1,119,910	+				-0.5
1,119,910	+				-0.3
1,119,910	+				+0.7
1,119,918	-				-2.3
1,119,918	-				-0.6
1,119,918	-				-0.2
1,119,918	-				-0.7
1,119,918	-				-1.9
1,119,924	+				+0.7
1,119,948	-				+0.0
1,119,959	+				-0.8
1,119,968	+				+0.0
1,119,968	+				-0.7
1,119,981	+				-0.0
1,119,990	+				-1.4
1,119,990	+				+0.1
1,119,996	+				-1.6
1,119,996	+				-0.1
1,119,996	+				-0.4
1,120,004	-				+0.5
1,120,004	-				+0.0
1,120,004	-				+0.1
1,120,004	-				+0.6
1,120,004	-				+0.1
1,120,004	-				+0.8
1,120,006	+				-3.2
1,120,022	-				-0.5
1,120,036	-				+0.2
1,120,058	-				-0.2
1,120,080	+		GFF1117	0.10	-0.0
1,120,088	-		GFF1117	0.12	+1.3
1,120,098	+		GFF1117	0.14	-2.1
1,120,108	+		GFF1117	0.16	-0.4
1,120,108	+		GFF1117	0.16	-2.3
1,120,108	+		GFF1117	0.16	+0.3
1,120,116	-		GFF1117	0.17	-0.5
1,120,116	-		GFF1117	0.17	-1.4
1,120,118	+		GFF1117	0.17	-2.2
1,120,126	-		GFF1117	0.19	+0.1
1,120,153	-		GFF1117	0.24	+0.6
1,120,155	+		GFF1117	0.24	+0.2
1,120,155	+		GFF1117	0.24	+0.2
1,120,165	+		GFF1117	0.26	-2.0
1,120,173	-		GFF1117	0.27	-0.2
1,120,173	-		GFF1117	0.27	+0.3
1,120,185	-		GFF1117	0.30	-0.8
1,120,209	+		GFF1117	0.34	-0.8
1,120,209	+		GFF1117	0.34	+1.3
1,120,209	+		GFF1117	0.34	-0.4
1,120,209	+		GFF1117	0.34	+0.6
1,120,211	-		GFF1117	0.34	-1.2
1,120,217	-		GFF1117	0.36	-0.8
1,120,244	+		GFF1117	0.40	+0.3
1,120,264	+		GFF1117	0.44	+1.1
1,120,266	-		GFF1117	0.45	-0.9
1,120,297	+		GFF1117	0.50	-0.3
1,120,303	+		GFF1117	0.51	+1.8
1,120,320	+		GFF1117	0.54	-0.7
1,120,321	-		GFF1117	0.55	-1.5
1,120,353	-		GFF1117	0.60	-0.3
1,120,369	+		GFF1117	0.63	+0.7
1,120,428	+		GFF1117	0.74	+0.4
1,120,431	-		GFF1117	0.75	-0.2
1,120,433	+		GFF1117	0.75	+0.2
1,120,433	+		GFF1117	0.75	-0.5
1,120,433	+		GFF1117	0.75	+1.0
1,120,433	+		GFF1117	0.75	-2.9
1,120,433	+		GFF1117	0.75	-1.0
1,120,433	+		GFF1117	0.75	-1.7
1,120,433	+		GFF1117	0.75	+1.3
1,120,441	-		GFF1117	0.77	-2.6
1,120,441	-		GFF1117	0.77	-0.7
1,120,441	-		GFF1117	0.77	-0.7
1,120,441	-		GFF1117	0.77	-1.0
1,120,441	-		GFF1117	0.77	-0.3
1,120,441	-		GFF1117	0.77	+0.7
1,120,441	-		GFF1117	0.77	-0.3
1,120,441	-		GFF1117	0.77	+0.7
1,120,441	-		GFF1117	0.77	-1.0
1,120,441	-		GFF1117	0.77	-1.0
1,120,454	-		GFF1117	0.79	-0.6
1,120,459	+		GFF1117	0.80	-0.9
1,120,477	-		GFF1117	0.83	-0.1
1,120,519	+				-0.4
1,120,572	+				-1.4
1,120,575	-				+0.6
1,120,580	-				+1.8
1,120,585	-				-2.9
1,120,585	-				-0.5
1,120,589	-				+1.2
1,120,592	+				-0.5
1,120,600	-				-1.5
1,120,600	-				-1.9
1,120,600	-				-0.2
1,120,600	-				-0.2
1,120,607	+				+0.4
1,120,607	+				-0.2
1,120,607	+				-0.3
1,120,615	-				-0.3
1,120,615	-				-0.2
1,120,615	-				+1.8
1,120,615	-				-0.5
1,120,615	-				-0.4
1,120,615	-				+0.8
1,120,615	-				+1.0
1,120,627	+				-0.0
1,120,629	+				-0.4
1,120,635	-				+0.2
1,120,638	+				+0.5
1,120,641	+				-0.4
1,120,646	+				+0.3
1,120,646	-				+0.1
1,120,651	+				-1.6
1,120,654	-				+0.6
1,120,654	-				+1.2
1,120,659	+				+0.9
1,120,659	+				-1.0
1,120,659	+				+1.0
1,120,667	-				-1.3
1,120,685	+				+0.3
1,120,685	+				-0.4
1,120,701	+				+0.5
1,120,701	+				+0.3
1,120,701	+				+0.1
1,120,701	+				+0.4
1,120,701	+				-1.8
1,120,701	+				-0.0
1,120,701	+				-0.3
1,120,701	+				-1.7
1,120,704	-				+0.1
1,120,704	-				-2.3
1,120,706	+				+0.3
1,120,706	+				-1.2
1,120,706	+				+0.9
1,120,706	+				-1.7
1,120,706	+				-0.9
1,120,706	+				-0.3
1,120,706	+				-0.3
1,120,709	-				-0.9
1,120,709	-				-1.0
1,120,709	-				+0.1
1,120,709	-				-0.2
1,120,711	+				+0.1
1,120,714	-				-0.1
1,120,714	-				-0.5
1,120,714	-				-0.0
1,120,714	-				-1.1
1,120,714	-				+0.7
1,120,719	-				-1.3
1,120,719	-				+0.2
1,120,720	+				-1.0
1,120,726	+				-0.4
1,120,726	+				+0.2
1,120,734	-				-0.8
1,120,734	-				+0.0
1,120,734	-				+0.2
1,120,753	-				-0.5
1,120,781	+				+0.2
1,120,789	-				-0.4
1,120,791	-				-0.6
1,120,793	+				+0.7
1,120,819	+				+0.3
1,120,819	+				-0.8
1,120,819	+				+0.3
1,120,819	+				+0.7
1,120,819	+				-0.6
1,120,819	+				-0.5
1,120,819	+				-0.8
1,120,819	+				-1.0
1,120,820	+				+0.1
1,120,827	-				+0.2
1,120,827	-				-1.4
1,120,827	-				+0.4
1,120,827	-				-0.7
1,120,827	-				+0.8
1,120,827	-				+0.5
1,120,827	-				-0.2
1,120,828	-				+0.7
1,120,828	-				-1.1
1,120,828	-				-0.5
1,120,830	+				-0.3
1,120,838	-				-0.4
1,120,838	-				-0.7
1,120,838	-				+0.8
1,120,853	+		GFF1118	0.11	-0.6
1,120,868	+		GFF1118	0.12	-2.5
1,120,868	+		GFF1118	0.12	+0.6
1,120,906	+		GFF1118	0.16	-0.4
1,120,906	+		GFF1118	0.16	-1.3
1,120,906	+		GFF1118	0.16	+1.0
1,120,906	+		GFF1118	0.16	-1.4
1,120,906	+		GFF1118	0.16	-0.7
1,120,906	+		GFF1118	0.16	-0.6
1,120,906	+		GFF1118	0.16	-0.7
1,120,906	+		GFF1118	0.16	+0.7
1,120,906	+		GFF1118	0.16	-1.5
1,120,906	+		GFF1118	0.16	+1.0
1,120,906	+		GFF1118	0.16	-0.2
1,120,911	+		GFF1118	0.17	+0.1
1,120,914	-		GFF1118	0.17	-0.3
1,120,914	-		GFF1118	0.17	-1.0
1,120,914	-		GFF1118	0.17	-0.4
1,120,914	-		GFF1118	0.17	-2.1
1,120,914	-		GFF1118	0.17	+0.7
1,120,914	-		GFF1118	0.17	-0.5
1,120,914	-		GFF1118	0.17	+0.4
1,120,921	+		GFF1118	0.18	-0.4
1,120,922	+		GFF1118	0.18	-0.4
1,120,927	+		GFF1118	0.18	-1.2
1,120,930	+		GFF1118	0.19	-0.5
1,120,930	+		GFF1118	0.19	-0.2
1,120,930	+		GFF1118	0.19	+0.1
1,120,930	-		GFF1118	0.19	+0.2
1,120,940	+		GFF1118	0.20	+0.5
1,120,940	+		GFF1118	0.20	+0.3
1,120,943	+		GFF1118	0.20	+0.2
1,120,951	-		GFF1118	0.21	-1.4
1,120,952	+		GFF1118	0.21	-1.4
1,120,956	-		GFF1118	0.22	+0.2
1,120,963	+		GFF1118	0.22	-0.0
1,120,963	+		GFF1118	0.22	-0.3
1,120,963	+		GFF1118	0.22	-0.3
1,120,965	-		GFF1118	0.22	+0.2
1,120,971	-		GFF1118	0.23	-0.9
1,120,971	-		GFF1118	0.23	-0.8
1,120,974	+		GFF1118	0.23	+0.4
1,120,974	+		GFF1118	0.23	-0.1
1,120,992	-		GFF1118	0.25	+0.1
1,120,992	-		GFF1118	0.25	+0.6
1,121,086	-		GFF1118	0.35	+0.7
1,121,098	+		GFF1118	0.37	-1.3
1,121,113	-		GFF1118	0.38	-0.2
1,121,132	-		GFF1118	0.40	-0.1
1,121,155	+		GFF1118	0.43	+1.4
1,121,155	+		GFF1118	0.43	-0.2
1,121,159	-		GFF1118	0.43	+1.3
1,121,162	+		GFF1118	0.43	-0.3
1,121,169	+		GFF1118	0.44	-0.8
1,121,182	+		GFF1118	0.46	-0.8
1,121,184	+		GFF1118	0.46	+0.3
1,121,232	-		GFF1118	0.51	-0.3
1,121,233	-		GFF1118	0.51	-1.9
1,121,233	-		GFF1118	0.51	-0.2
1,121,240	+		GFF1118	0.52	-0.3
1,121,242	-		GFF1118	0.52	-2.6
1,121,246	+		GFF1118	0.52	-2.6
1,121,254	-		GFF1118	0.53	+0.8
1,121,258	+		GFF1118	0.54	-0.5
1,121,258	+		GFF1118	0.54	-0.7
1,121,281	-		GFF1118	0.56	+0.1
1,121,286	+		GFF1118	0.57	-2.2
1,121,286	+		GFF1118	0.57	+0.6
1,121,294	-		GFF1118	0.58	-0.3
1,121,295	-		GFF1118	0.58	-2.3
1,121,295	-		GFF1118	0.58	-0.2
1,121,303	+		GFF1118	0.58	+0.8
1,121,303	+		GFF1118	0.58	+0.3
1,121,311	-		GFF1118	0.59	-1.1
1,121,363	-		GFF1118	0.65	-1.8
1,121,372	+		GFF1118	0.66	-1.3
1,121,378	-		GFF1118	0.66	-0.3
1,121,378	-		GFF1118	0.66	-1.1
1,121,378	-		GFF1118	0.66	-0.4
1,121,378	-		GFF1118	0.66	-1.2
1,121,378	-		GFF1118	0.66	+0.7
1,121,397	-		GFF1118	0.68	-1.3
1,121,455	+		GFF1118	0.75	+0.6
1,121,466	+		GFF1118	0.76	-2.2
1,121,474	-		GFF1118	0.77	+0.3
1,121,476	+		GFF1118	0.77	-1.0
1,121,476	+		GFF1118	0.77	-1.4
1,121,511	+		GFF1118	0.81	+0.5
1,121,511	+		GFF1118	0.81	+0.4
1,121,518	-		GFF1118	0.81	-0.8
1,121,519	-		GFF1118	0.81	-0.7
1,121,519	-		GFF1118	0.81	+0.4
1,121,519	-		GFF1118	0.81	+0.0
1,121,532	-		GFF1118	0.83	-2.5
1,121,532	-		GFF1118	0.83	-0.1
1,121,532	-		GFF1118	0.83	-0.7
1,121,532	-		GFF1118	0.83	+0.1
1,121,532	-		GFF1118	0.83	-0.9
1,121,552	-		GFF1118	0.85	+0.6
1,121,559	-		GFF1118	0.86	+0.1
1,121,560	+		GFF1118	0.86	-0.3
1,121,560	+		GFF1118	0.86	+0.1
1,121,560	+		GFF1118	0.86	+0.1
1,121,560	-		GFF1118	0.86	-1.6
1,121,561	+		GFF1118	0.86	-2.2
1,121,568	-		GFF1118	0.87	+1.6
1,121,569	-		GFF1118	0.87	+0.7
1,121,569	-		GFF1118	0.87	+0.5
1,121,577	-		GFF1118	0.88	+0.5
1,121,614	+				+0.8
1,121,615	+				-0.3
1,121,622	-				-0.1
1,121,622	-				-1.5
1,121,623	-				+0.0
1,121,623	-				-1.6
1,121,630	+				-0.4
1,121,674	+				+0.2
1,121,682	+				-0.1
1,121,682	-				+0.4
1,121,695	-				+1.0
1,121,716	+				-1.8
1,121,716	+				-0.8
1,121,716	+				-0.6
1,121,724	-				+1.1
1,121,724	-				-1.6
1,121,726	+				+0.5
1,121,734	+				-1.0
1,121,734	+				+0.7
1,121,734	+				-1.4
1,121,742	-				-0.1
1,121,742	-				-1.6
1,121,742	-				-0.3
1,121,742	-				-0.9
1,121,742	-				-0.2
1,121,744	+				-0.5
1,121,750	+				+0.7
1,121,758	-				-0.4
1,121,760	+				-0.7
1,121,760	+				-0.2
1,121,760	+				+1.1
1,121,768	-				-1.0
1,121,768	-				-0.8
1,121,768	-				-0.3
1,121,768	-				-0.1
1,121,788	-				-1.6
1,121,796	+				+0.2
1,121,796	-				+1.2
1,121,798	+				+1.5
1,121,808	+				-0.6
1,121,808	-				-0.1
1,121,819	+		GFF1119	0.11	-0.5
1,121,819	+		GFF1119	0.11	+0.1
1,121,824	+		GFF1119	0.11	-1.4
1,121,827	-		GFF1119	0.12	-0.3
1,121,827	-		GFF1119	0.12	+1.8
1,121,827	-		GFF1119	0.12	-0.6
1,121,827	-		GFF1119	0.12	-0.2
1,121,827	-		GFF1119	0.12	-0.4
1,121,832	-		GFF1119	0.12	-2.2
1,121,915	+		GFF1119	0.19	+0.4
1,121,917	+		GFF1119	0.19	+0.6
1,121,923	-		GFF1119	0.20	-0.5
1,121,925	+		GFF1119	0.20	-0.5
1,121,925	+		GFF1119	0.20	-1.0
1,121,925	+		GFF1119	0.20	+1.3
1,121,925	+		GFF1119	0.20	-0.2
1,121,925	+		GFF1119	0.20	-0.4
1,121,925	+		GFF1119	0.20	-0.2
1,121,928	-		GFF1119	0.20	+1.0
1,121,932	+		GFF1119	0.20	-0.1
1,121,933	-		GFF1119	0.20	-0.9
1,121,933	-		GFF1119	0.20	+0.2
1,121,933	-		GFF1119	0.20	+1.0
1,121,933	-		GFF1119	0.20	-1.3
1,121,964	+		GFF1119	0.23	-0.5
1,121,978	-		GFF1119	0.24	-0.6
1,121,990	+		GFF1119	0.25	-0.2
1,121,990	+		GFF1119	0.25	-0.0
1,121,990	+		GFF1119	0.25	+0.6
1,121,990	+		GFF1119	0.25	+0.3
1,121,990	+		GFF1119	0.25	-0.4
1,121,998	-		GFF1119	0.26	-0.2
1,121,998	-		GFF1119	0.26	+0.2
1,121,998	-		GFF1119	0.26	-0.2
1,122,014	+		GFF1119	0.27	+0.2
1,122,016	+		GFF1119	0.27	+0.0
1,122,016	+		GFF1119	0.27	-1.3
1,122,016	+		GFF1119	0.27	-0.6
1,122,016	+		GFF1119	0.27	+1.4
1,122,016	+		GFF1119	0.27	-0.4
1,122,016	+		GFF1119	0.27	-0.6
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