Strain Fitness in Sphingobium sp. HT1-2 around GFF1114

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,115,579	+		GFF1113	0.69	+0.8
1,115,584	+		GFF1113	0.69	+0.7
1,115,584	+		GFF1113	0.69	-0.0
1,115,584	+		GFF1113	0.69	+0.6
1,115,584	+		GFF1113	0.69	-0.6
1,115,584	+		GFF1113	0.69	+0.7
1,115,584	+		GFF1113	0.69	+1.9
1,115,584	+		GFF1113	0.69	-0.3
1,115,584	+		GFF1113	0.69	-0.7
1,115,584	+		GFF1113	0.69	+0.1
1,115,584	+		GFF1113	0.69	-0.2
1,115,584	+		GFF1113	0.69	-0.4
1,115,584	+		GFF1113	0.69	-1.2
1,115,584	+		GFF1113	0.69	-0.3
1,115,584	+		GFF1113	0.69	+0.3
1,115,592	-		GFF1113	0.70	-1.0
1,115,592	-		GFF1113	0.70	+1.9
1,115,592	-		GFF1113	0.70	+0.2
1,115,592	-		GFF1113	0.70	-1.6
1,115,592	-		GFF1113	0.70	-1.5
1,115,592	-		GFF1113	0.70	+1.1
1,115,600	+		GFF1113	0.70	-1.1
1,115,608	-		GFF1113	0.70	-0.8
1,115,608	-		GFF1113	0.70	+1.1
1,115,608	-		GFF1113	0.70	-0.1
1,115,608	-		GFF1113	0.70	+0.6
1,115,616	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.4
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	-0.4
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+1.9
1,115,621	+		GFF1113	0.71	+0.2
1,115,621	+		GFF1113	0.71	-0.3
1,115,621	+		GFF1113	0.71	-1.9
1,115,621	+		GFF1113	0.71	+0.4
1,115,621	+		GFF1113	0.71	+1.4
1,115,621	+		GFF1113	0.71	-0.6
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	-0.2
1,115,621	+		GFF1113	0.71	+1.0
1,115,621	+		GFF1113	0.71	+0.3
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	-0.7
1,115,621	+		GFF1113	0.71	-0.7
1,115,621	+		GFF1113	0.71	-1.7
1,115,621	+		GFF1113	0.71	-1.0
1,115,621	+		GFF1113	0.71	+0.6
1,115,621	+		GFF1113	0.71	-0.0
1,115,621	+		GFF1113	0.71	-1.4
1,115,621	+		GFF1113	0.71	+0.5
1,115,621	+		GFF1113	0.71	-1.0
1,115,621	+		GFF1113	0.71	-0.5
1,115,621	+		GFF1113	0.71	+0.3
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.6
1,115,621	+		GFF1113	0.71	-0.0
1,115,621	+		GFF1113	0.71	-1.5
1,115,621	+		GFF1113	0.71	-1.5
1,115,621	+		GFF1113	0.71	-0.3
1,115,621	+		GFF1113	0.71	-0.0
1,115,621	+		GFF1113	0.71	+0.4
1,115,621	+		GFF1113	0.71	-0.8
1,115,621	+		GFF1113	0.71	-1.1
1,115,621	+		GFF1113	0.71	-0.4
1,115,621	+		GFF1113	0.71	+0.7
1,115,624	-		GFF1113	0.71	-0.9
1,115,624	-		GFF1113	0.71	+0.4
1,115,629	-		GFF1113	0.71	-0.2
1,115,629	-		GFF1113	0.71	-1.1
1,115,629	-		GFF1113	0.71	-0.8
1,115,629	-		GFF1113	0.71	-0.7
1,115,629	-		GFF1113	0.71	-0.0
1,115,629	-		GFF1113	0.71	+1.4
1,115,629	-		GFF1113	0.71	-1.0
1,115,629	-		GFF1113	0.71	-1.1
1,115,629	-		GFF1113	0.71	+0.0
1,115,629	-		GFF1113	0.71	-0.3
1,115,629	-		GFF1113	0.71	-1.0
1,115,629	-		GFF1113	0.71	+0.0
1,115,629	-		GFF1113	0.71	+0.3
1,115,629	-		GFF1113	0.71	+0.1
1,115,629	-		GFF1113	0.71	+0.0
1,115,629	-		GFF1113	0.71	+2.1
1,115,629	-		GFF1113	0.71	-0.1
1,115,629	-		GFF1113	0.71	-0.0
1,115,629	-		GFF1113	0.71	-0.8
1,115,629	-		GFF1113	0.71	-0.8
1,115,629	-		GFF1113	0.71	-0.5
1,115,629	-		GFF1113	0.71	+0.4
1,115,629	-		GFF1113	0.71	+0.0
1,115,629	-		GFF1113	0.71	+0.6
1,115,629	-		GFF1113	0.71	+0.9
1,115,629	-		GFF1113	0.71	+0.5
1,115,629	-		GFF1113	0.71	-1.3
1,115,659	+		GFF1113	0.73	-2.5
1,115,660	-		GFF1113	0.73	+0.0
1,115,677	+		GFF1113	0.74	-0.0
1,115,677	+		GFF1113	0.74	-0.6
1,115,685	-		GFF1113	0.74	+0.4
1,115,685	-		GFF1113	0.74	-0.3
1,115,703	+		GFF1113	0.75	-2.1
1,115,731	-		GFF1113	0.77	+0.4
1,115,731	-		GFF1113	0.77	+0.1
1,115,731	-		GFF1113	0.77	-2.1
1,115,733	+		GFF1113	0.77	-0.3
1,115,733	+		GFF1113	0.77	-1.5
1,115,770	-		GFF1113	0.79	-0.5
1,115,770	-		GFF1113	0.79	-1.0
1,115,788	+		GFF1113	0.80	-0.7
1,115,796	-		GFF1113	0.80	+0.2
1,115,796	-		GFF1113	0.80	+0.5
1,115,806	-		GFF1113	0.80	+0.1
1,115,819	+		GFF1113	0.81	+1.8
1,115,829	-		GFF1113	0.82	-0.6
1,115,831	-		GFF1113	0.82	-0.4
1,115,844	-		GFF1113	0.82	-0.7
1,115,846	-		GFF1113	0.82	+0.2
1,115,846	-		GFF1113	0.82	+0.0
1,115,865	-		GFF1113	0.83	+0.5
1,115,879	-		GFF1113	0.84	-0.7
1,115,907	-		GFF1113	0.86	+0.3
1,115,916	+		GFF1113	0.86	+0.8
1,115,925	+		GFF1113	0.86	+1.3
1,115,925	-		GFF1113	0.86	-1.1
1,115,929	-		GFF1113	0.87	-1.0
1,115,963	+		GFF1113	0.88	+0.5
1,115,966	-		GFF1113	0.89	-0.9
1,115,971	-		GFF1113	0.89	+0.1
1,115,971	-		GFF1113	0.89	-0.3
1,115,976	-		GFF1113	0.89	+0.5
1,115,978	+		GFF1113	0.89	-0.2
1,115,978	+		GFF1113	0.89	-2.0
1,115,978	+		GFF1113	0.89	-0.3
1,115,978	+		GFF1113	0.89	-0.7
1,115,978	+		GFF1113	0.89	-0.1
1,115,986	-		GFF1113	0.90	+1.6
1,115,986	-		GFF1113	0.90	-0.1
1,115,999	-				-0.8
1,116,048	+				-0.4
1,116,056	-				+0.9
1,116,079	-				+1.1
1,116,079	-				+0.1
1,116,079	-				+0.3
1,116,090	+				-2.0
1,116,098	-				+0.4
1,116,098	-				-0.4
1,116,109	+				+0.7
1,116,109	-				+0.5
1,116,123	+				-1.6
1,116,123	+				-2.0
1,116,131	-				+0.6
1,116,145	-				+0.1
1,116,163	+				+0.1
1,116,163	+				+0.6
1,116,171	-				-0.7
1,116,171	-				-0.4
1,116,189	-				-0.2
1,116,191	+				+0.3
1,116,193	+				-2.1
1,116,222	+				+1.1
1,116,222	+				-0.3
1,116,273	+				-0.6
1,116,273	+				+0.4
1,116,288	-				-0.8
1,116,316	+				-0.5
1,116,321	+				-1.1
1,116,321	+				-0.7
1,116,324	-				-0.9
1,116,326	+				+0.8
1,116,329	-				+0.1
1,116,336	-				-0.6
1,116,336	-				-0.2
1,116,336	-				-0.2
1,116,336	-				-2.5
1,116,341	-				+0.6
1,116,362	-				-0.3
1,116,413	+				-1.1
1,116,424	-				+0.5
1,116,428	+				-0.3
1,116,436	-				+0.8
1,116,517	+				-1.3
1,116,518	+				-1.3
1,116,530	+				+0.5
1,116,531	-				+0.1
1,116,538	-				-0.5
1,116,538	-				+0.3
1,116,551	+				-1.9
1,116,551	+				-0.7
1,116,559	-				+1.2
1,116,559	-				+1.0
1,116,559	-				+0.2
1,116,562	+				+0.5
1,116,562	+				-2.1
1,116,574	+				-1.4
1,116,578	+				+0.3
1,116,581	-				-0.3
1,116,588	+				-0.4
1,116,588	+				-0.2
1,116,588	+				-1.0
1,116,596	-				-0.0
1,116,597	+				+0.9
1,116,599	+				-0.5
1,116,602	+				-0.1
1,116,605	-				+0.7
1,116,605	-				-1.4
1,116,607	-				-0.1
1,116,609	+				+0.0
1,116,609	+				-0.2
1,116,609	-				+0.5
1,116,610	-				-1.1
1,116,610	-				-1.9
1,116,617	-				+0.0
1,116,627	+				+0.1
1,116,627	-				-1.0
1,116,673	+		GFF1114	0.11	-0.1
1,116,673	+		GFF1114	0.11	-1.1
1,116,681	-		GFF1114	0.12	-0.8
1,116,695	+		GFF1114	0.13	+0.8
1,116,711	+		GFF1114	0.14	+0.4
1,116,716	+		GFF1114	0.14	+0.6
1,116,716	+		GFF1114	0.14	-2.4
1,116,724	-		GFF1114	0.14	+0.4
1,116,724	-		GFF1114	0.14	+0.3
1,116,765	+		GFF1114	0.17	+1.2
1,116,771	+		GFF1114	0.18	+0.5
1,116,774	-		GFF1114	0.18	-1.3
1,116,774	-		GFF1114	0.18	-1.9
1,116,779	-		GFF1114	0.18	-0.4
1,116,779	-		GFF1114	0.18	+0.9
1,116,779	-		GFF1114	0.18	+0.2
1,116,779	-		GFF1114	0.18	-1.7
1,116,784	+		GFF1114	0.19	-0.2
1,116,789	-		GFF1114	0.19	-2.2
1,116,791	+		GFF1114	0.19	-0.3
1,116,791	+		GFF1114	0.19	+0.6
1,116,798	+		GFF1114	0.20	+1.8
1,116,798	+		GFF1114	0.20	-0.0
1,116,798	+		GFF1114	0.20	+1.1
1,116,798	+		GFF1114	0.20	-0.7
1,116,798	+		GFF1114	0.20	-1.8
1,116,798	+		GFF1114	0.20	-0.4
1,116,798	+		GFF1114	0.20	-0.5
1,116,799	-		GFF1114	0.20	+0.1
1,116,799	-		GFF1114	0.20	+0.4
1,116,799	-		GFF1114	0.20	-0.7
1,116,799	-		GFF1114	0.20	-0.4
1,116,799	-		GFF1114	0.20	+0.3
1,116,799	-		GFF1114	0.20	+0.5
1,116,800	+		GFF1114	0.20	-2.1
1,116,806	-		GFF1114	0.20	-0.7
1,116,806	-		GFF1114	0.20	-1.3
1,116,806	-		GFF1114	0.20	-1.1
1,116,806	-		GFF1114	0.20	-0.7
1,116,806	-		GFF1114	0.20	+0.5
1,116,806	-		GFF1114	0.20	-0.0
1,116,806	-		GFF1114	0.20	-0.7
1,116,817	+		GFF1114	0.21	-0.6
1,116,821	-		GFF1114	0.21	-1.0
1,116,872	+		GFF1114	0.25	-0.0
1,116,872	+		GFF1114	0.25	-0.6
1,116,880	-		GFF1114	0.25	-1.4
1,116,880	-		GFF1114	0.25	-1.0
1,116,880	-		GFF1114	0.25	-2.2
1,116,880	-		GFF1114	0.25	+0.1
1,116,880	-		GFF1114	0.25	+0.2
1,116,880	-		GFF1114	0.25	+0.0
1,116,890	-		GFF1114	0.26	-0.5
1,116,969	-		GFF1114	0.31	-0.8
1,116,979	-		GFF1114	0.32	-0.1
1,116,979	-		GFF1114	0.32	+0.6
1,116,979	-		GFF1114	0.32	+0.6
1,116,979	-		GFF1114	0.32	+0.8
1,116,981	+		GFF1114	0.32	+0.6
1,116,981	+		GFF1114	0.32	-0.4
1,116,981	+		GFF1114	0.32	-0.1
1,116,981	+		GFF1114	0.32	+0.2
1,116,981	+		GFF1114	0.32	-0.3
1,116,981	+		GFF1114	0.32	+0.7
1,116,981	+		GFF1114	0.32	+0.1
1,116,981	+		GFF1114	0.32	+0.9
1,116,981	+		GFF1114	0.32	-0.4
1,116,981	+		GFF1114	0.32	-1.6
1,116,981	+		GFF1114	0.32	+0.9
1,116,981	+		GFF1114	0.32	+0.1
1,116,981	+		GFF1114	0.32	+0.2
1,116,981	+		GFF1114	0.32	-0.7
1,116,989	-		GFF1114	0.33	-0.3
1,116,989	-		GFF1114	0.33	-1.9
1,116,989	-		GFF1114	0.33	-0.0
1,116,989	-		GFF1114	0.33	+0.4
1,116,989	-		GFF1114	0.33	-0.4
1,116,989	-		GFF1114	0.33	+0.2
1,116,989	-		GFF1114	0.33	+0.1
1,116,989	-		GFF1114	0.33	+1.5
1,116,989	-		GFF1114	0.33	-0.4
1,116,989	-		GFF1114	0.33	-0.5
1,116,989	-		GFF1114	0.33	-1.3
1,116,989	-		GFF1114	0.33	-0.5
1,116,989	-		GFF1114	0.33	-2.1
1,116,989	-		GFF1114	0.33	+0.5
1,116,989	-		GFF1114	0.33	-1.0
1,116,989	-		GFF1114	0.33	-1.4
1,116,989	-		GFF1114	0.33	-0.6
1,116,989	-		GFF1114	0.33	-0.1
1,116,989	-		GFF1114	0.33	+0.8
1,117,013	+		GFF1114	0.34	+0.5
1,117,016	-		GFF1114	0.34	-0.9
1,117,021	-		GFF1114	0.35	+1.1
1,117,026	-		GFF1114	0.35	+0.3
1,117,083	-		GFF1114	0.39	-2.3
1,117,083	-		GFF1114	0.39	-0.6
1,117,085	+		GFF1114	0.39	-0.3
1,117,093	-		GFF1114	0.40	-2.4
1,117,093	-		GFF1114	0.40	-0.3
1,117,109	+		GFF1114	0.41	-1.2
1,117,109	+		GFF1114	0.41	-2.0
1,117,109	+		GFF1114	0.41	+0.1
1,117,109	+		GFF1114	0.41	-0.5
1,117,112	-		GFF1114	0.41	-0.9
1,117,138	-		GFF1114	0.43	-0.7
1,117,145	+		GFF1114	0.43	-0.2
1,117,145	+		GFF1114	0.43	-0.3
1,117,145	+		GFF1114	0.43	-1.4
1,117,145	+		GFF1114	0.43	-0.2
1,117,145	+		GFF1114	0.43	-0.1
1,117,153	-		GFF1114	0.44	-1.3
1,117,153	-		GFF1114	0.44	+1.6
1,117,153	-		GFF1114	0.44	-0.5
1,117,153	-		GFF1114	0.44	+0.0
1,117,153	-		GFF1114	0.44	-2.0
1,117,153	-		GFF1114	0.44	+1.3
1,117,170	+		GFF1114	0.45	-1.5
1,117,170	+		GFF1114	0.45	-0.5
1,117,170	-		GFF1114	0.45	-2.1
1,117,170	-		GFF1114	0.45	+0.7
1,117,180	+		GFF1114	0.46	+0.0
1,117,180	+		GFF1114	0.46	-0.4
1,117,183	-		GFF1114	0.46	+1.2
1,117,188	-		GFF1114	0.46	-0.8
1,117,235	+		GFF1114	0.49	-0.5
1,117,235	+		GFF1114	0.49	+0.3
1,117,235	+		GFF1114	0.49	-0.4
1,117,243	-		GFF1114	0.50	+1.0
1,117,243	-		GFF1114	0.50	-0.4
1,117,253	+		GFF1114	0.50	-0.6
1,117,266	-		GFF1114	0.51	-0.4
1,117,285	-		GFF1114	0.53	-0.3
1,117,327	+		GFF1114	0.56	-0.3
1,117,352	+		GFF1114	0.57	-2.6
1,117,360	-		GFF1114	0.58	+0.1
1,117,360	-		GFF1114	0.58	-1.3
1,117,384	+		GFF1114	0.59	-0.7
1,117,403	+		GFF1114	0.61	-1.3
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