Strain Fitness in Sphingobium sp. HT1-2 around GFF1113

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,113,461	-				-0.6
1,113,463	-				+0.1
1,113,472	+				+0.2
1,113,472	+				+0.1
1,113,475	-				-0.8
1,113,475	-				-1.0
1,113,480	-		GFF1111	0.11	-0.0
1,113,480	-		GFF1111	0.11	+0.2
1,113,511	+		GFF1111	0.25	-0.5
1,113,511	+		GFF1111	0.25	-0.7
1,113,519	-		GFF1111	0.28	-0.3
1,113,519	-		GFF1111	0.28	-0.3
1,113,519	-		GFF1111	0.28	-2.6
1,113,531	+		GFF1111	0.34	-1.0
1,113,531	+		GFF1111	0.34	-1.0
1,113,540	-		GFF1111	0.38	-0.0
1,113,562	-		GFF1111	0.48	-2.2
1,113,620	+		GFF1111	0.74	+1.6
1,113,620	-		GFF1111	0.74	+0.6
1,113,677	+				+0.2
1,113,682	+				+0.3
1,113,690	-				-0.3
1,113,701	-				+0.3
1,113,702	-				-2.4
1,113,706	-				-1.6
1,113,722	+				-0.5
1,113,731	-				+0.4
1,113,748	+		GFF1112	0.12	+0.0
1,113,760	+		GFF1112	0.14	-0.3
1,113,760	+		GFF1112	0.14	-0.0
1,113,763	-		GFF1112	0.15	-1.6
1,113,768	-		GFF1112	0.16	-0.3
1,113,791	+		GFF1112	0.20	+1.3
1,113,817	+		GFF1112	0.24	+0.0
1,113,828	-		GFF1112	0.26	-0.9
1,113,841	+		GFF1112	0.29	+0.2
1,113,843	+		GFF1112	0.29	+0.9
1,113,843	+		GFF1112	0.29	-2.6
1,113,858	-		GFF1112	0.32	-1.9
1,113,860	+		GFF1112	0.32	+0.3
1,113,860	+		GFF1112	0.32	+0.2
1,113,860	-		GFF1112	0.32	-0.7
1,113,860	-		GFF1112	0.32	-0.9
1,113,868	-		GFF1112	0.33	-0.3
1,113,875	+		GFF1112	0.35	+0.2
1,113,883	-		GFF1112	0.36	+0.2
1,113,903	-		GFF1112	0.40	+0.2
1,113,903	-		GFF1112	0.40	-2.7
1,113,905	+		GFF1112	0.40	+0.7
1,113,913	-		GFF1112	0.41	+1.1
1,113,913	-		GFF1112	0.41	+0.0
1,113,928	+		GFF1112	0.44	-0.5
1,113,933	+		GFF1112	0.45	+0.6
1,113,936	+		GFF1112	0.45	-0.4
1,113,936	+		GFF1112	0.45	-0.7
1,113,936	-		GFF1112	0.45	+0.1
1,113,936	-		GFF1112	0.45	+0.9
1,113,949	-		GFF1112	0.48	-1.0
1,113,949	-		GFF1112	0.48	+1.3
1,113,954	+		GFF1112	0.49	+0.4
1,113,954	-		GFF1112	0.49	+1.3
1,113,954	-		GFF1112	0.49	-0.6
1,113,962	-		GFF1112	0.50	-2.6
1,113,962	-		GFF1112	0.50	-1.3
1,113,974	+		GFF1112	0.52	+0.8
1,113,975	+		GFF1112	0.52	+0.6
1,114,012	+		GFF1112	0.59	+0.9
1,114,012	+		GFF1112	0.59	+0.0
1,114,050	+		GFF1112	0.66	-0.1
1,114,058	-		GFF1112	0.67	-0.7
1,114,088	-		GFF1112	0.73	-0.7
1,114,093	+		GFF1112	0.73	+0.4
1,114,099	+		GFF1112	0.75	-0.2
1,114,112	+		GFF1112	0.77	-0.2
1,114,112	+		GFF1112	0.77	+0.5
1,114,112	+		GFF1112	0.77	+0.6
1,114,112	-		GFF1112	0.77	+0.4
1,114,118	+		GFF1112	0.78	+0.0
1,114,120	-		GFF1112	0.78	-1.6
1,114,120	-		GFF1112	0.78	-1.7
1,114,120	-		GFF1112	0.78	+0.3
1,114,120	-		GFF1112	0.78	+0.5
1,114,120	-		GFF1112	0.78	+0.4
1,114,120	-		GFF1112	0.78	+0.1
1,114,120	-		GFF1112	0.78	-1.2
1,114,120	-		GFF1112	0.78	-1.1
1,114,132	+		GFF1112	0.80	+0.0
1,114,132	+		GFF1112	0.80	-0.5
1,114,140	-		GFF1112	0.82	+0.2
1,114,142	+		GFF1112	0.82	-1.5
1,114,142	+		GFF1112	0.82	-0.9
1,114,142	+		GFF1112	0.82	+0.5
1,114,142	+		GFF1112	0.82	+0.6
1,114,142	+		GFF1112	0.82	+0.1
1,114,143	+		GFF1112	0.82	+1.1
1,114,148	+		GFF1112	0.83	+1.1
1,114,150	-		GFF1112	0.84	-0.5
1,114,150	-		GFF1112	0.84	+0.6
1,114,150	-		GFF1112	0.84	-1.4
1,114,150	-		GFF1112	0.84	+0.5
1,114,150	-		GFF1112	0.84	-0.4
1,114,158	+		GFF1112	0.85	-1.4
1,114,166	-		GFF1112	0.86	-0.1
1,114,183	-		GFF1112	0.89	-1.1
1,114,202	+				+0.3
1,114,202	+				-1.5
1,114,213	-				+0.3
1,114,225	+				-0.6
1,114,359	-				+0.3
1,114,368	-				-1.2
1,114,370	+				-2.1
1,114,370	+				-0.3
1,114,370	+				-1.3
1,114,370	+				-2.1
1,114,378	-				+1.0
1,114,378	-				+0.1
1,114,378	-				-0.8
1,114,378	-				-2.6
1,114,378	-				-0.0
1,114,378	-				+0.4
1,114,378	-				-0.5
1,114,378	-				+0.4
1,114,378	-				-1.9
1,114,378	-				+0.6
1,114,384	+				-0.7
1,114,385	+				-1.6
1,114,385	+				+0.4
1,114,385	+				-0.8
1,114,393	-				+0.5
1,114,395	+				-0.1
1,114,433	-		GFF1113	0.10	-0.8
1,114,438	-		GFF1113	0.11	-1.1
1,114,460	+		GFF1113	0.12	+0.6
1,114,465	-		GFF1113	0.12	-0.6
1,114,485	-		GFF1113	0.13	-0.4
1,114,492	+		GFF1113	0.13	-1.7
1,114,502	+		GFF1113	0.14	+0.5
1,114,518	+		GFF1113	0.15	+0.6
1,114,520	+		GFF1113	0.15	-0.6
1,114,530	+		GFF1113	0.15	-0.7
1,114,531	-		GFF1113	0.15	-1.0
1,114,541	-		GFF1113	0.16	+0.3
1,114,556	+		GFF1113	0.17	+0.6
1,114,560	-		GFF1113	0.17	+0.5
1,114,569	+		GFF1113	0.17	-0.3
1,114,569	+		GFF1113	0.17	+1.2
1,114,569	+		GFF1113	0.17	-2.2
1,114,577	-		GFF1113	0.18	-1.0
1,114,582	-		GFF1113	0.18	-0.5
1,114,632	+		GFF1113	0.21	+0.7
1,114,635	-		GFF1113	0.21	+0.8
1,114,635	-		GFF1113	0.21	-0.5
1,114,636	-		GFF1113	0.21	+0.2
1,114,650	-		GFF1113	0.22	-0.0
1,114,650	-		GFF1113	0.22	+0.5
1,114,656	-		GFF1113	0.22	-0.1
1,114,678	-		GFF1113	0.23	-0.1
1,114,682	+		GFF1113	0.23	-0.3
1,114,687	+		GFF1113	0.23	-0.4
1,114,690	-		GFF1113	0.24	-0.0
1,114,690	-		GFF1113	0.24	-2.7
1,114,703	+		GFF1113	0.24	-1.3
1,114,703	+		GFF1113	0.24	-0.1
1,114,706	-		GFF1113	0.24	-1.0
1,114,724	+		GFF1113	0.25	+0.5
1,114,730	-		GFF1113	0.26	-0.6
1,114,732	-		GFF1113	0.26	-0.8
1,114,732	-		GFF1113	0.26	-0.8
1,114,740	-		GFF1113	0.26	+0.1
1,114,745	-		GFF1113	0.26	-1.2
1,114,750	+		GFF1113	0.27	+0.1
1,114,750	+		GFF1113	0.27	-0.4
1,114,758	-		GFF1113	0.27	-0.6
1,114,762	+		GFF1113	0.27	-0.8
1,114,778	+		GFF1113	0.28	-0.2
1,114,790	-		GFF1113	0.29	-1.7
1,114,824	-		GFF1113	0.30	+0.6
1,114,825	-		GFF1113	0.30	-0.7
1,114,826	+		GFF1113	0.30	-0.7
1,114,868	-		GFF1113	0.33	-1.7
1,114,870	+		GFF1113	0.33	+0.5
1,114,904	-		GFF1113	0.34	-0.2
1,114,906	-		GFF1113	0.35	-0.3
1,114,906	-		GFF1113	0.35	-0.5
1,114,906	-		GFF1113	0.35	-1.6
1,114,908	+		GFF1113	0.35	-0.7
1,114,908	+		GFF1113	0.35	-0.8
1,114,908	+		GFF1113	0.35	-0.7
1,114,908	+		GFF1113	0.35	-1.1
1,114,908	+		GFF1113	0.35	-1.1
1,114,911	+		GFF1113	0.35	-1.5
1,114,916	-		GFF1113	0.35	+0.7
1,114,916	-		GFF1113	0.35	-0.3
1,114,916	-		GFF1113	0.35	-0.1
1,114,916	-		GFF1113	0.35	-0.0
1,114,916	-		GFF1113	0.35	-0.6
1,114,916	-		GFF1113	0.35	-1.4
1,114,916	-		GFF1113	0.35	-0.7
1,114,931	+		GFF1113	0.36	-0.6
1,114,931	+		GFF1113	0.36	+1.4
1,114,931	+		GFF1113	0.36	+0.1
1,114,931	+		GFF1113	0.36	-0.8
1,114,931	+		GFF1113	0.36	-0.3
1,114,931	+		GFF1113	0.36	-2.3
1,114,931	+		GFF1113	0.36	-0.3
1,114,931	+		GFF1113	0.36	+0.5
1,114,931	+		GFF1113	0.36	-1.3
1,114,931	+		GFF1113	0.36	+0.0
1,114,939	-		GFF1113	0.36	+0.1
1,114,939	-		GFF1113	0.36	-0.8
1,114,939	-		GFF1113	0.36	-0.3
1,114,939	-		GFF1113	0.36	+0.2
1,114,939	-		GFF1113	0.36	-0.2
1,114,939	-		GFF1113	0.36	+0.1
1,114,939	-		GFF1113	0.36	+0.3
1,114,939	-		GFF1113	0.36	-2.3
1,114,939	-		GFF1113	0.36	+1.0
1,114,941	+		GFF1113	0.36	-0.6
1,114,949	-		GFF1113	0.37	+0.6
1,114,949	-		GFF1113	0.37	+0.0
1,114,949	-		GFF1113	0.37	-0.4
1,114,949	-		GFF1113	0.37	-1.3
1,114,950	+		GFF1113	0.37	-0.8
1,114,968	+		GFF1113	0.38	-1.0
1,114,982	+		GFF1113	0.38	+0.2
1,114,990	-		GFF1113	0.39	-1.5
1,115,021	+		GFF1113	0.40	-1.5
1,115,021	+		GFF1113	0.40	-1.8
1,115,021	+		GFF1113	0.40	-1.4
1,115,021	+		GFF1113	0.40	-0.6
1,115,021	+		GFF1113	0.40	-1.7
1,115,021	+		GFF1113	0.40	-0.2
1,115,021	+		GFF1113	0.40	-0.5
1,115,029	-		GFF1113	0.41	-1.8
1,115,029	-		GFF1113	0.41	-0.6
1,115,034	-		GFF1113	0.41	+0.6
1,115,035	-		GFF1113	0.41	-1.5
1,115,059	+		GFF1113	0.42	-0.5
1,115,065	+		GFF1113	0.43	+0.4
1,115,073	+		GFF1113	0.43	+1.0
1,115,080	-		GFF1113	0.43	+1.0
1,115,081	-		GFF1113	0.43	+0.3
1,115,092	-		GFF1113	0.44	+0.0
1,115,096	+		GFF1113	0.44	+0.6
1,115,149	-		GFF1113	0.47	-0.4
1,115,197	+		GFF1113	0.49	+0.1
1,115,226	+		GFF1113	0.51	-0.7
1,115,229	-		GFF1113	0.51	+0.8
1,115,231	+		GFF1113	0.51	-1.4
1,115,239	-		GFF1113	0.52	+0.1
1,115,239	-		GFF1113	0.52	-0.7
1,115,239	-		GFF1113	0.52	-1.0
1,115,265	-		GFF1113	0.53	-2.2
1,115,280	+		GFF1113	0.54	-1.3
1,115,280	+		GFF1113	0.54	+0.4
1,115,280	+		GFF1113	0.54	-0.6
1,115,280	+		GFF1113	0.54	+0.1
1,115,280	+		GFF1113	0.54	-2.4
1,115,368	+		GFF1113	0.58	-0.6
1,115,374	-		GFF1113	0.58	+1.9
1,115,374	-		GFF1113	0.58	-0.4
1,115,383	+		GFF1113	0.59	-1.7
1,115,388	-		GFF1113	0.59	+0.2
1,115,393	-		GFF1113	0.59	-0.1
1,115,406	+		GFF1113	0.60	-0.1
1,115,406	+		GFF1113	0.60	-1.0
1,115,406	+		GFF1113	0.60	-0.9
1,115,412	+		GFF1113	0.60	-0.8
1,115,414	-		GFF1113	0.60	-0.4
1,115,446	-		GFF1113	0.62	+0.0
1,115,448	+		GFF1113	0.62	-0.4
1,115,456	-		GFF1113	0.63	-0.3
1,115,458	+		GFF1113	0.63	+0.4
1,115,458	+		GFF1113	0.63	-1.2
1,115,458	+		GFF1113	0.63	+0.7
1,115,458	+		GFF1113	0.63	+1.1
1,115,466	-		GFF1113	0.63	+0.5
1,115,466	-		GFF1113	0.63	+0.7
1,115,466	-		GFF1113	0.63	+0.9
1,115,466	-		GFF1113	0.63	-1.2
1,115,466	-		GFF1113	0.63	+0.3
1,115,466	-		GFF1113	0.63	-0.8
1,115,469	-		GFF1113	0.63	-0.6
1,115,579	+		GFF1113	0.69	+0.8
1,115,584	+		GFF1113	0.69	+0.7
1,115,584	+		GFF1113	0.69	-0.0
1,115,584	+		GFF1113	0.69	+0.6
1,115,584	+		GFF1113	0.69	-0.6
1,115,584	+		GFF1113	0.69	+0.7
1,115,584	+		GFF1113	0.69	+1.9
1,115,584	+		GFF1113	0.69	-0.3
1,115,584	+		GFF1113	0.69	-0.7
1,115,584	+		GFF1113	0.69	+0.1
1,115,584	+		GFF1113	0.69	-0.2
1,115,584	+		GFF1113	0.69	-0.4
1,115,584	+		GFF1113	0.69	-1.2
1,115,584	+		GFF1113	0.69	-0.3
1,115,584	+		GFF1113	0.69	+0.3
1,115,592	-		GFF1113	0.70	-1.0
1,115,592	-		GFF1113	0.70	+1.9
1,115,592	-		GFF1113	0.70	+0.2
1,115,592	-		GFF1113	0.70	-1.6
1,115,592	-		GFF1113	0.70	-1.5
1,115,592	-		GFF1113	0.70	+1.1
1,115,600	+		GFF1113	0.70	-1.1
1,115,608	-		GFF1113	0.70	-0.8
1,115,608	-		GFF1113	0.70	+1.1
1,115,608	-		GFF1113	0.70	-0.1
1,115,608	-		GFF1113	0.70	+0.6
1,115,616	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.4
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	-0.4
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+1.9
1,115,621	+		GFF1113	0.71	+0.2
1,115,621	+		GFF1113	0.71	-0.3
1,115,621	+		GFF1113	0.71	-1.9
1,115,621	+		GFF1113	0.71	+0.4
1,115,621	+		GFF1113	0.71	+1.4
1,115,621	+		GFF1113	0.71	-0.6
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	-0.2
1,115,621	+		GFF1113	0.71	+1.0
1,115,621	+		GFF1113	0.71	+0.3
1,115,621	+		GFF1113	0.71	+0.1
1,115,621	+		GFF1113	0.71	-0.7
1,115,621	+		GFF1113	0.71	-0.7
1,115,621	+		GFF1113	0.71	-1.7
1,115,621	+		GFF1113	0.71	-1.0
1,115,621	+		GFF1113	0.71	+0.6
1,115,621	+		GFF1113	0.71	-0.0
1,115,621	+		GFF1113	0.71	-1.4
1,115,621	+		GFF1113	0.71	+0.5
1,115,621	+		GFF1113	0.71	-1.0
1,115,621	+		GFF1113	0.71	-0.5
1,115,621	+		GFF1113	0.71	+0.3
1,115,621	+		GFF1113	0.71	+0.8
1,115,621	+		GFF1113	0.71	+0.6
1,115,621	+		GFF1113	0.71	-0.0
1,115,621	+		GFF1113	0.71	-1.5
1,115,621	+		GFF1113	0.71	-1.5
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1,116,048	+				-0.4
1,116,056	-				+0.9
1,116,079	-				+1.1
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1,116,079	-				+0.3
1,116,090	+				-2.0
1,116,098	-				+0.4
1,116,098	-				-0.4
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1,116,109	-				+0.5
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1,116,123	+				-2.0
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1,116,145	-				+0.1
1,116,163	+				+0.1
1,116,163	+				+0.6
1,116,171	-				-0.7
1,116,171	-				-0.4
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1,116,191	+				+0.3
1,116,193	+				-2.1
1,116,222	+				+1.1
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1,116,273	+				+0.4
1,116,288	-				-0.8
1,116,316	+				-0.5
1,116,321	+				-1.1
1,116,321	+				-0.7
1,116,324	-				-0.9
1,116,326	+				+0.8
1,116,329	-				+0.1
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1,116,336	-				-0.2
1,116,336	-				-0.2
1,116,336	-				-2.5
1,116,341	-				+0.6
1,116,362	-				-0.3
1,116,413	+				-1.1
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1,116,518	+				-1.3
1,116,530	+				+0.5
1,116,531	-				+0.1
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1,116,538	-				+0.3
1,116,551	+				-1.9
1,116,551	+				-0.7
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1,116,559	-				+1.0
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