Strain Fitness in Sphingobium sp. HT1-2 around GFF1095

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,097,106	+		GFF1094	0.36	-1.6
1,097,130	+		GFF1094	0.38	-0.4
1,097,130	+		GFF1094	0.38	-0.8
1,097,130	+		GFF1094	0.38	+0.7
1,097,139	+		GFF1094	0.39	+0.4
1,097,141	-		GFF1094	0.40	+0.3
1,097,147	-		GFF1094	0.40	+0.4
1,097,147	-		GFF1094	0.40	-0.9
1,097,150	+		GFF1094	0.41	+0.0
1,097,178	+		GFF1094	0.44	-0.6
1,097,178	+		GFF1094	0.44	+1.1
1,097,178	+		GFF1094	0.44	-0.4
1,097,178	+		GFF1094	0.44	-1.7
1,097,178	+		GFF1094	0.44	+0.2
1,097,178	+		GFF1094	0.44	-0.7
1,097,178	+		GFF1094	0.44	-0.5
1,097,178	+		GFF1094	0.44	+0.5
1,097,178	+		GFF1094	0.44	+1.3
1,097,179	+		GFF1094	0.44	-0.2
1,097,180	+		GFF1094	0.44	+0.3
1,097,186	-		GFF1094	0.45	+1.3
1,097,186	-		GFF1094	0.45	-0.9
1,097,186	-		GFF1094	0.45	-0.4
1,097,186	-		GFF1094	0.45	-0.6
1,097,186	-		GFF1094	0.45	-0.1
1,097,186	-		GFF1094	0.45	+0.8
1,097,186	-		GFF1094	0.45	+0.2
1,097,187	-		GFF1094	0.45	-0.3
1,097,187	-		GFF1094	0.45	-0.2
1,097,200	-		GFF1094	0.46	-0.8
1,097,221	+		GFF1094	0.48	-0.7
1,097,240	+		GFF1094	0.51	-0.8
1,097,258	+		GFF1094	0.53	-0.4
1,097,258	+		GFF1094	0.53	-0.0
1,097,266	-		GFF1094	0.54	-1.2
1,097,266	-		GFF1094	0.54	-1.4
1,097,266	-		GFF1094	0.54	-2.4
1,097,266	-		GFF1094	0.54	+0.4
1,097,266	-		GFF1094	0.54	-0.6
1,097,268	-		GFF1094	0.54	+1.1
1,097,279	+		GFF1094	0.55	-0.2
1,097,279	+		GFF1094	0.55	+0.7
1,097,279	+		GFF1094	0.55	-0.5
1,097,279	+		GFF1094	0.55	+0.9
1,097,279	+		GFF1094	0.55	-0.1
1,097,287	-		GFF1094	0.56	+0.1
1,097,287	-		GFF1094	0.56	-0.2
1,097,287	-		GFF1094	0.56	-0.1
1,097,289	+		GFF1094	0.56	-0.8
1,097,294	+		GFF1094	0.57	-0.5
1,097,294	+		GFF1094	0.57	-0.0
1,097,294	+		GFF1094	0.57	-1.6
1,097,294	+		GFF1094	0.57	-1.8
1,097,294	+		GFF1094	0.57	+0.6
1,097,294	+		GFF1094	0.57	+0.8
1,097,294	+		GFF1094	0.57	+0.8
1,097,294	+		GFF1094	0.57	+0.4
1,097,294	+		GFF1094	0.57	+0.8
1,097,294	+		GFF1094	0.57	-0.3
1,097,294	+		GFF1094	0.57	+0.2
1,097,294	+		GFF1094	0.57	-1.6
1,097,294	+		GFF1094	0.57	-0.6
1,097,294	+		GFF1094	0.57	-1.1
1,097,294	+		GFF1094	0.57	+0.6
1,097,294	+		GFF1094	0.57	-0.5
1,097,294	+		GFF1094	0.57	-0.1
1,097,294	+		GFF1094	0.57	+0.7
1,097,294	+		GFF1094	0.57	+0.7
1,097,294	+		GFF1094	0.57	-0.2
1,097,294	+		GFF1094	0.57	-1.1
1,097,294	+		GFF1094	0.57	+0.5
1,097,294	+		GFF1094	0.57	-0.2
1,097,295	-		GFF1094	0.57	-0.1
1,097,297	-		GFF1094	0.57	+0.1
1,097,299	+		GFF1094	0.57	-2.4
1,097,299	+		GFF1094	0.57	+0.8
1,097,302	-		GFF1094	0.58	+0.6
1,097,302	-		GFF1094	0.58	-0.6
1,097,302	-		GFF1094	0.58	+0.2
1,097,302	-		GFF1094	0.58	-0.2
1,097,302	-		GFF1094	0.58	+0.0
1,097,302	-		GFF1094	0.58	-0.2
1,097,302	-		GFF1094	0.58	+0.3
1,097,302	-		GFF1094	0.58	-1.9
1,097,302	-		GFF1094	0.58	+0.3
1,097,302	-		GFF1094	0.58	-0.5
1,097,302	-		GFF1094	0.58	-0.0
1,097,302	-		GFF1094	0.58	-1.4
1,097,302	-		GFF1094	0.58	+0.8
1,097,302	-		GFF1094	0.58	-0.6
1,097,302	-		GFF1094	0.58	-0.8
1,097,302	-		GFF1094	0.58	-0.2
1,097,302	-		GFF1094	0.58	+0.9
1,097,302	-		GFF1094	0.58	+0.5
1,097,302	-		GFF1094	0.58	-0.0
1,097,302	-		GFF1094	0.58	-0.8
1,097,302	-		GFF1094	0.58	-0.1
1,097,304	+		GFF1094	0.58	+1.2
1,097,304	+		GFF1094	0.58	+0.1
1,097,307	-		GFF1094	0.58	-0.1
1,097,312	-		GFF1094	0.59	-0.2
1,097,312	-		GFF1094	0.59	-1.4
1,097,312	-		GFF1094	0.59	-0.4
1,097,312	-		GFF1094	0.59	+1.7
1,097,313	+		GFF1094	0.59	+0.3
1,097,320	-		GFF1094	0.60	-0.3
1,097,321	-		GFF1094	0.60	+0.4
1,097,331	-		GFF1094	0.61	+1.4
1,097,396	-		GFF1094	0.68	+0.2
1,097,401	-		GFF1094	0.69	+0.6
1,097,404	+		GFF1094	0.69	-0.7
1,097,404	+		GFF1094	0.69	-0.5
1,097,404	-		GFF1094	0.69	-0.5
1,097,406	-		GFF1094	0.69	-0.9
1,097,421	-		GFF1094	0.71	+0.3
1,097,430	+		GFF1094	0.72	-1.0
1,097,480	+		GFF1094	0.77	+0.7
1,097,480	+		GFF1094	0.77	+0.2
1,097,480	+		GFF1094	0.77	-1.3
1,097,480	+		GFF1094	0.77	-1.0
1,097,480	+		GFF1094	0.77	+0.5
1,097,480	+		GFF1094	0.77	+0.1
1,097,480	+		GFF1094	0.77	-0.1
1,097,480	+		GFF1094	0.77	-1.3
1,097,480	+		GFF1094	0.77	-0.6
1,097,488	-		GFF1094	0.78	+2.2
1,097,488	-		GFF1094	0.78	-1.5
1,097,488	-		GFF1094	0.78	+0.3
1,097,488	-		GFF1094	0.78	-0.3
1,097,488	-		GFF1094	0.78	-0.1
1,097,488	-		GFF1094	0.78	+1.6
1,097,488	-		GFF1094	0.78	+0.1
1,097,488	-		GFF1094	0.78	-0.2
1,097,488	-		GFF1094	0.78	-0.4
1,097,488	-		GFF1094	0.78	-1.0
1,097,488	-		GFF1094	0.78	+0.6
1,097,488	-		GFF1094	0.78	-0.7
1,097,488	-		GFF1094	0.78	-0.1
1,097,488	-		GFF1094	0.78	-1.7
1,097,488	-		GFF1094	0.78	-0.9
1,097,489	+		GFF1094	0.78	+0.3
1,097,511	+		GFF1094	0.81	-0.3
1,097,517	+		GFF1094	0.81	+0.1
1,097,529	-		GFF1094	0.83	+0.7
1,097,531	+		GFF1094	0.83	+0.1
1,097,544	-		GFF1094	0.85	+0.3
1,097,555	+		GFF1094	0.86	-0.9
1,097,560	+		GFF1094	0.86	-0.1
1,097,581	-		GFF1094	0.89	-0.1
1,097,588	+		GFF1094	0.89	-0.2
1,097,593	+				-0.0
1,097,593	+				-0.0
1,097,593	+				+0.8
1,097,593	+				+1.4
1,097,593	+				-0.2
1,097,594	-				-0.0
1,097,596	-				-0.7
1,097,596	-				-2.7
1,097,596	-				-0.2
1,097,596	-				-1.5
1,097,601	-				-1.6
1,097,601	-				-0.1
1,097,601	-				+0.3
1,097,601	-				-0.3
1,097,601	-				-0.5
1,097,608	-				-0.3
1,097,611	-				+1.3
1,097,617	+				+0.9
1,097,618	+				-0.6
1,097,626	-				+0.7
1,097,633	+				-1.2
1,097,633	+				+1.0
1,097,633	+				+0.8
1,097,633	+				+0.8
1,097,641	-				+0.5
1,097,641	-				-0.3
1,097,643	-				+0.7
1,097,649	+				+1.5
1,097,661	-				+0.1
1,097,661	-				-3.0
1,097,661	-				+0.7
1,097,666	+				-0.0
1,097,666	+				-0.1
1,097,680	-				+0.4
1,097,680	-				-1.5
1,097,693	-				+0.4
1,097,693	-				+0.1
1,097,697	-				+0.1
1,097,699	+				+0.2
1,097,699	+				-1.3
1,097,699	+				-0.0
1,097,699	+				-0.6
1,097,699	+				-1.6
1,097,699	+				+0.8
1,097,699	+				+0.1
1,097,705	-				-0.5
1,097,707	-				+0.0
1,097,707	-				-1.6
1,097,707	-				-1.4
1,097,707	-				+1.5
1,097,707	-				+0.8
1,097,728	-				+1.0
1,097,751	-				-1.5
1,097,756	-				-0.6
1,097,756	-				-0.1
1,097,756	-				-0.4
1,097,761	-				-0.3
1,097,766	-				-0.6
1,097,769	-				+0.9
1,097,816	+				-2.3
1,097,840	+				-0.6
1,097,840	+				+0.8
1,097,848	-				+0.9
1,097,848	-				-0.0
1,097,848	-				+0.0
1,097,848	-				-0.1
1,097,848	-				-1.1
1,097,848	-				-1.8
1,097,853	-				+0.5
1,097,888	-				-0.3
1,097,933	+				-0.2
1,097,933	+				+1.3
1,097,933	+				-0.6
1,097,933	+				-2.7
1,097,933	+				-1.0
1,097,933	+				+0.5
1,097,933	+				-1.0
1,097,933	+				-2.3
1,097,933	+				-0.1
1,097,933	+				-1.3
1,097,933	+				-0.1
1,097,935	+				-0.3
1,097,941	-				-2.1
1,097,941	-				-1.3
1,097,941	-				-0.9
1,097,941	-				-0.7
1,097,941	-				+1.5
1,097,941	-				+0.2
1,097,941	-				+1.0
1,097,941	-				+1.7
1,097,942	+				-1.4
1,097,948	-				-1.5
1,097,960	+				+1.8
1,097,974	+				-0.7
1,097,978	-				-2.3
1,097,978	-				+0.3
1,098,006	-				-2.2
1,098,018	-				-0.4
1,098,043	+				-1.0
1,098,043	+				-0.5
1,098,049	+				-2.0
1,098,049	+				-0.3
1,098,049	+				-2.1
1,098,051	-				+1.0
1,098,056	+				+0.6
1,098,067	-				-1.4
1,098,067	-				-0.5
1,098,069	-				-0.3
1,098,069	-				-0.5
1,098,073	+				+0.8
1,098,078	+				+0.3
1,098,078	+				+0.8
1,098,078	+				+0.3
1,098,078	+				+0.2
1,098,081	-				+0.5
1,098,086	-				+0.3
1,098,090	+				-0.4
1,098,107	-				+0.7
1,098,123	-				+0.0
1,098,138	-				+0.1
1,098,151	+		GFF1095	0.10	+1.0
1,098,156	+		GFF1095	0.11	-1.9
1,098,159	-		GFF1095	0.12	+0.1
1,098,173	+		GFF1095	0.15	-0.3
1,098,173	+		GFF1095	0.15	-0.2
1,098,173	+		GFF1095	0.15	-0.3
1,098,173	+		GFF1095	0.15	+1.1
1,098,173	+		GFF1095	0.15	+0.1
1,098,173	+		GFF1095	0.15	-0.7
1,098,173	+		GFF1095	0.15	-0.2
1,098,173	+		GFF1095	0.15	-0.3
1,098,173	+		GFF1095	0.15	+0.3
1,098,176	-		GFF1095	0.16	-1.8
1,098,181	-		GFF1095	0.17	+0.3
1,098,181	-		GFF1095	0.17	+1.3
1,098,181	-		GFF1095	0.17	+0.5
1,098,181	-		GFF1095	0.17	+1.7
1,098,181	-		GFF1095	0.17	+1.1
1,098,181	-		GFF1095	0.17	-1.0
1,098,185	+		GFF1095	0.18	-0.9
1,098,195	+		GFF1095	0.20	+1.7
1,098,204	-		GFF1095	0.22	-1.0
1,098,217	-		GFF1095	0.25	+0.7
1,098,225	-		GFF1095	0.26	-0.5
1,098,227	+		GFF1095	0.27	+0.7
1,098,235	-		GFF1095	0.29	+0.0
1,098,235	-		GFF1095	0.29	-0.3
1,098,235	-		GFF1095	0.29	+0.9
1,098,275	-		GFF1095	0.38	-1.1
1,098,275	-		GFF1095	0.38	+0.6
1,098,282	+		GFF1095	0.39	+0.5
1,098,289	+		GFF1095	0.41	-0.8
1,098,312	-		GFF1095	0.46	+0.6
1,098,314	+		GFF1095	0.46	-1.6
1,098,317	-		GFF1095	0.47	-0.6
1,098,319	+		GFF1095	0.47	+0.6
1,098,319	+		GFF1095	0.47	-2.4
1,098,327	-		GFF1095	0.49	+0.2
1,098,345	+		GFF1095	0.53	-0.6
1,098,349	-		GFF1095	0.54	+0.4
1,098,353	-		GFF1095	0.55	-1.7
1,098,353	-		GFF1095	0.55	+0.4
1,098,356	+		GFF1095	0.55	-1.0
1,098,376	-		GFF1095	0.60	-1.6
1,098,376	-		GFF1095	0.60	+0.3
1,098,400	-		GFF1095	0.65	+0.3
1,098,400	-		GFF1095	0.65	+0.2
1,098,407	-		GFF1095	0.67	-0.6
1,098,423	-		GFF1095	0.70	+0.8
1,098,480	-		GFF1095	0.83	-0.3
1,098,527	-				+0.2
1,098,535	+				-0.9
1,098,544	+				-0.9
1,098,549	+				-1.0
1,098,560	+				+0.4
1,098,565	+				+0.3
1,098,568	-				-0.5
1,098,570	+				-0.1
1,098,575	+				-1.3
1,098,575	+				-0.3
1,098,575	+				-0.2
1,098,575	+				-0.4
1,098,575	+				-0.0
1,098,578	-				-1.0
1,098,583	-				-0.6
1,098,583	-				-0.4
1,098,583	-				+0.7
1,098,593	+				-0.9
1,098,593	+				+0.5
1,098,606	-				+1.5
1,098,622	+				+1.5
1,098,622	+				+0.7
1,098,664	+				+0.1
1,098,664	+				+0.6
1,098,664	+				+0.5
1,098,664	+				+0.0
1,098,664	+				-0.1
1,098,664	-				-0.1
1,098,672	-				-0.7
1,098,672	-				-0.3
1,098,672	-				+0.3
1,098,672	-				+0.6
1,098,672	-				+0.2
1,098,672	-				+0.4
1,098,680	+				+0.2
1,098,680	+				-0.0
1,098,688	-				+0.7
1,098,690	+				+0.4
1,098,690	+				-0.1
1,098,690	+				-1.7
1,098,698	-				+1.3
1,098,710	+				-0.4
1,098,710	+				+0.3
1,098,729	-				-0.6
1,098,730	-				+0.6
1,098,745	+				-0.7
1,098,745	+				+0.5
1,098,752	+				+0.6
1,098,753	-				+2.0
1,098,753	-				-1.0
1,098,757	+				+0.3
1,098,757	+				-1.7
1,098,757	+				-1.1
1,098,759	+				+0.4
1,098,765	-				-0.8
1,098,765	-				-1.0
1,098,765	-				-0.0
1,098,765	-				+0.0
1,098,765	-				+0.2
1,098,765	-				+0.1
1,098,767	+				-0.9
1,098,767	-				-2.3
1,098,774	-				+1.2
1,098,775	-				+0.5
1,098,775	-				-0.3
1,098,782	+				-0.0
1,098,834	+				-2.0
1,098,834	+				-0.0
1,098,853	+				+1.1
1,098,853	+				+0.4
1,098,858	+				-0.1
1,098,883	+				-0.5
1,098,883	+				-0.0
1,098,883	+				+0.3
1,098,891	-				+0.1
1,098,891	-				-0.8
1,098,908	+				+1.4
1,098,908	+				-0.1
1,098,908	+				+1.1
1,098,908	+				-1.3
1,098,908	+				-0.4
1,098,908	+				+1.5
1,098,908	+				-0.0
1,098,908	+				+0.3
1,098,916	-				+1.0
1,098,916	-				-2.3
1,098,916	-				+0.2
1,098,927	+				-1.3
1,098,939	+				+0.2
1,098,948	+				+0.4
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