Strain Fitness in Sphingobium sp. HT1-2 around GFF1087

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,090,473	-		GFF1085	0.57	-1.9
1,090,475	+		GFF1085	0.58	+0.0
1,090,475	+		GFF1085	0.58	+0.5
1,090,483	-		GFF1085	0.58	-0.7
1,090,483	-		GFF1085	0.58	-0.6
1,090,488	+		GFF1085	0.59	-0.6
1,090,488	+		GFF1085	0.59	-0.2
1,090,490	+		GFF1085	0.59	+1.8
1,090,490	+		GFF1085	0.59	+0.0
1,090,496	+		GFF1085	0.59	+0.5
1,090,496	-		GFF1085	0.59	-0.1
1,090,519	+		GFF1085	0.61	-0.6
1,090,532	-		GFF1085	0.62	-1.8
1,090,532	-		GFF1085	0.62	-1.3
1,090,557	+		GFF1085	0.64	+0.1
1,090,564	-		GFF1085	0.65	-0.7
1,090,619	+		GFF1085	0.70	-0.7
1,090,644	-		GFF1085	0.72	+0.2
1,090,655	-		GFF1085	0.73	+0.2
1,090,660	-		GFF1085	0.73	-0.6
1,090,672	-		GFF1085	0.74	+0.7
1,090,695	+		GFF1085	0.76	+1.1
1,090,726	+		GFF1085	0.78	-0.3
1,090,734	-		GFF1085	0.79	-1.3
1,090,755	-		GFF1085	0.81	+0.2
1,090,771	-		GFF1085	0.82	+0.3
1,090,773	+		GFF1085	0.82	-1.3
1,090,781	-		GFF1085	0.83	+0.1
1,090,781	-		GFF1085	0.83	-0.3
1,090,798	-		GFF1085	0.84	+1.1
1,090,811	-		GFF1085	0.86	+0.2
1,090,816	+		GFF1085	0.86	-0.2
1,090,816	+		GFF1085	0.86	+0.0
1,090,825	-		GFF1085	0.87	+0.8
1,090,858	+		GFF1085	0.89	+0.5
1,090,864	+				+1.0
1,090,872	-				-0.0
1,090,872	-				-1.4
1,090,883	+				+0.2
1,090,883	+				+0.6
1,090,883	+				-0.5
1,090,883	+				-0.5
1,090,883	+				-2.3
1,090,883	+				-0.6
1,090,883	+				+0.2
1,090,890	-				-0.5
1,090,891	-				+0.4
1,090,891	-				+1.0
1,090,891	-				+1.2
1,090,891	-				+0.5
1,090,898	+				-0.5
1,090,900	+				-0.3
1,090,902	+				-1.8
1,090,910	-				-1.3
1,090,910	-				-0.3
1,090,923	-				+0.9
1,090,924	+				+0.1
1,090,961	-				+0.6
1,090,966	+				+0.9
1,090,973	+				+1.0
1,090,974	+				-0.3
1,090,974	+				+0.4
1,090,982	-				-1.5
1,090,987	+				+0.1
1,090,987	+				+0.2
1,090,995	-				+1.0
1,091,002	-				-0.1
1,091,004	+				-0.8
1,091,023	+				+0.3
1,091,039	-				-0.6
1,091,060	+				-0.1
1,091,065	+				-0.2
1,091,065	+				-0.0
1,091,073	-				-0.3
1,091,084	+				-1.7
1,091,092	-				-1.3
1,091,099	+				+1.0
1,091,102	+				+0.8
1,091,102	+				-1.4
1,091,102	+				-0.1
1,091,108	+				+0.4
1,091,110	-				-1.2
1,091,121	+				-0.3
1,091,133	+		GFF1086	0.14	+0.3
1,091,141	-		GFF1086	0.18	+1.1
1,091,146	+		GFF1086	0.20	+1.1
1,091,169	+		GFF1086	0.31	+0.3
1,091,174	+		GFF1086	0.33	+0.6
1,091,177	-		GFF1086	0.34	-0.3
1,091,183	+		GFF1086	0.37	-1.3
1,091,183	+		GFF1086	0.37	-0.2
1,091,183	+		GFF1086	0.37	-0.7
1,091,183	+		GFF1086	0.37	-1.4
1,091,191	-		GFF1086	0.41	-1.6
1,091,191	-		GFF1086	0.41	-0.9
1,091,201	-		GFF1086	0.45	-1.4
1,091,211	-		GFF1086	0.50	+1.2
1,091,221	-		GFF1086	0.55	-0.5
1,091,240	+		GFF1086	0.63	-0.9
1,091,248	-		GFF1086	0.67	+0.9
1,091,251	+		GFF1086	0.69	-0.3
1,091,256	+		GFF1086	0.71	-0.0
1,091,259	-		GFF1086	0.72	+0.4
1,091,259	-		GFF1086	0.72	-0.2
1,091,264	-		GFF1086	0.75	+1.4
1,091,272	+		GFF1086	0.78	+0.8
1,091,280	-		GFF1086	0.82	+0.2
1,091,290	+		GFF1086	0.87	-1.5
1,091,300	-				+0.7
1,091,326	-				-1.8
1,091,328	+				+0.7
1,091,328	+				+0.1
1,091,328	+				-0.5
1,091,336	-				+0.3
1,091,336	-				-0.7
1,091,360	-				-0.4
1,091,376	+				-0.4
1,091,381	+				+0.7
1,091,385	-				-2.2
1,091,395	-				+0.1
1,091,396	-				+0.5
1,091,396	-				+0.1
1,091,396	-				-1.6
1,091,396	-				-0.6
1,091,456	-				-1.5
1,091,473	-				+1.1
1,091,491	+				-1.0
1,091,496	+				-0.3
1,091,496	+				-0.0
1,091,496	+				-0.0
1,091,496	+				+1.1
1,091,496	+				+0.2
1,091,501	+				+0.7
1,091,501	+				+0.1
1,091,501	+				-0.2
1,091,501	+				+0.3
1,091,501	+				+1.1
1,091,504	-				+0.4
1,091,504	-				-0.8
1,091,508	+				+0.9
1,091,508	+				+0.3
1,091,508	+				+0.5
1,091,508	+				+0.1
1,091,508	+				+0.0
1,091,509	-				-1.0
1,091,509	-				+0.5
1,091,509	-				-0.3
1,091,514	-				+0.4
1,091,514	-				-0.2
1,091,516	-				-0.3
1,091,516	-				-1.7
1,091,516	-				+0.8
1,091,523	-		GFF1087	0.11	-0.4
1,091,523	-		GFF1087	0.11	+0.3
1,091,532	+		GFF1087	0.13	-1.6
1,091,532	+		GFF1087	0.13	+1.5
1,091,535	-		GFF1087	0.14	+0.2
1,091,537	+		GFF1087	0.14	-1.3
1,091,537	+		GFF1087	0.14	-0.4
1,091,537	+		GFF1087	0.14	-0.5
1,091,537	+		GFF1087	0.14	-0.7
1,091,537	+		GFF1087	0.14	-0.5
1,091,537	+		GFF1087	0.14	+0.2
1,091,537	+		GFF1087	0.14	+0.4
1,091,537	+		GFF1087	0.14	-0.5
1,091,537	+		GFF1087	0.14	+2.1
1,091,537	+		GFF1087	0.14	-1.1
1,091,537	+		GFF1087	0.14	+0.9
1,091,537	+		GFF1087	0.14	+0.3
1,091,540	-		GFF1087	0.15	+1.2
1,091,543	+		GFF1087	0.16	+0.5
1,091,545	-		GFF1087	0.16	+0.0
1,091,545	-		GFF1087	0.16	-0.5
1,091,545	-		GFF1087	0.16	+0.3
1,091,545	-		GFF1087	0.16	+0.3
1,091,551	+		GFF1087	0.17	+0.3
1,091,559	-		GFF1087	0.19	-0.3
1,091,575	+		GFF1087	0.22	-0.3
1,091,575	+		GFF1087	0.22	+0.5
1,091,613	+		GFF1087	0.30	-1.7
1,091,613	+		GFF1087	0.30	-0.4
1,091,613	+		GFF1087	0.30	+0.4
1,091,613	+		GFF1087	0.30	+0.3
1,091,613	+		GFF1087	0.30	+0.7
1,091,613	+		GFF1087	0.30	+0.5
1,091,613	+		GFF1087	0.30	+0.9
1,091,613	+		GFF1087	0.30	+0.2
1,091,613	+		GFF1087	0.30	+0.4
1,091,621	-		GFF1087	0.32	-0.3
1,091,621	-		GFF1087	0.32	-0.0
1,091,621	-		GFF1087	0.32	-1.2
1,091,621	-		GFF1087	0.32	+0.2
1,091,621	-		GFF1087	0.32	-0.3
1,091,621	-		GFF1087	0.32	+0.5
1,091,621	-		GFF1087	0.32	-0.6
1,091,621	-		GFF1087	0.32	-1.8
1,091,621	-		GFF1087	0.32	-1.7
1,091,621	-		GFF1087	0.32	+1.9
1,091,621	-		GFF1087	0.32	+1.8
1,091,621	-		GFF1087	0.32	+0.3
1,091,621	-		GFF1087	0.32	-0.7
1,091,621	-		GFF1087	0.32	+0.4
1,091,621	-		GFF1087	0.32	-1.4
1,091,623	+		GFF1087	0.32	+1.0
1,091,623	+		GFF1087	0.32	-0.7
1,091,623	+		GFF1087	0.32	-0.2
1,091,623	+		GFF1087	0.32	+1.1
1,091,623	+		GFF1087	0.32	-1.8
1,091,623	+		GFF1087	0.32	+0.1
1,091,623	+		GFF1087	0.32	+0.4
1,091,623	+		GFF1087	0.32	+0.5
1,091,623	+		GFF1087	0.32	-0.0
1,091,623	+		GFF1087	0.32	-0.0
1,091,623	+		GFF1087	0.32	+1.3
1,091,623	+		GFF1087	0.32	-0.4
1,091,623	+		GFF1087	0.32	-0.3
1,091,623	+		GFF1087	0.32	+0.1
1,091,623	+		GFF1087	0.32	+0.5
1,091,623	+		GFF1087	0.32	-0.9
1,091,623	+		GFF1087	0.32	+0.7
1,091,623	+		GFF1087	0.32	-1.3
1,091,623	+		GFF1087	0.32	+0.2
1,091,623	+		GFF1087	0.32	-0.4
1,091,623	+		GFF1087	0.32	-1.1
1,091,631	-		GFF1087	0.34	-0.3
1,091,631	-		GFF1087	0.34	-0.4
1,091,631	-		GFF1087	0.34	+0.5
1,091,631	-		GFF1087	0.34	+0.8
1,091,631	-		GFF1087	0.34	+0.0
1,091,631	-		GFF1087	0.34	+1.3
1,091,631	-		GFF1087	0.34	+0.8
1,091,631	-		GFF1087	0.34	+0.9
1,091,631	-		GFF1087	0.34	+1.0
1,091,631	-		GFF1087	0.34	+2.0
1,091,631	-		GFF1087	0.34	-0.1
1,091,631	-		GFF1087	0.34	-0.7
1,091,631	-		GFF1087	0.34	-0.7
1,091,631	-		GFF1087	0.34	-1.4
1,091,631	-		GFF1087	0.34	+0.5
1,091,631	-		GFF1087	0.34	+0.5
1,091,631	-		GFF1087	0.34	+0.3
1,091,631	-		GFF1087	0.34	-2.5
1,091,631	-		GFF1087	0.34	-1.4
1,091,631	-		GFF1087	0.34	+0.4
1,091,639	-		GFF1087	0.36	+0.7
1,091,639	-		GFF1087	0.36	+0.4
1,091,648	+		GFF1087	0.38	-0.6
1,091,648	+		GFF1087	0.38	-0.4
1,091,648	+		GFF1087	0.38	+0.4
1,091,657	+		GFF1087	0.40	+0.1
1,091,661	-		GFF1087	0.41	-0.7
1,091,714	-		GFF1087	0.52	-1.4
1,091,718	-		GFF1087	0.53	-0.1
1,091,718	-		GFF1087	0.53	-1.6
1,091,718	-		GFF1087	0.53	-0.5
1,091,725	+		GFF1087	0.54	+0.6
1,091,732	+		GFF1087	0.55	+0.4
1,091,749	+		GFF1087	0.59	-0.4
1,091,752	+		GFF1087	0.60	-1.6
1,091,757	-		GFF1087	0.61	-0.4
1,091,764	-		GFF1087	0.62	+0.2
1,091,771	+		GFF1087	0.64	+0.1
1,091,771	+		GFF1087	0.64	+0.2
1,091,771	+		GFF1087	0.64	+0.3
1,091,771	+		GFF1087	0.64	+0.6
1,091,779	-		GFF1087	0.65	+0.2
1,091,779	-		GFF1087	0.65	-1.7
1,091,793	+		GFF1087	0.68	-0.2
1,091,801	-		GFF1087	0.70	-1.9
1,091,801	-		GFF1087	0.70	-1.0
1,091,813	+		GFF1087	0.73	-1.7
1,091,819	+		GFF1087	0.74	-0.6
1,091,821	-		GFF1087	0.74	-0.0
1,091,824	+		GFF1087	0.75	-0.0
1,091,825	+		GFF1087	0.75	-0.2
1,091,827	-		GFF1087	0.76	-2.6
1,091,827	-		GFF1087	0.76	-0.0
1,091,827	-		GFF1087	0.76	-0.1
1,091,827	-		GFF1087	0.76	-0.0
1,091,831	-		GFF1087	0.76	+1.3
1,091,845	-		GFF1087	0.79	+0.3
1,091,849	+		GFF1087	0.80	-1.2
1,091,854	+		GFF1087	0.81	-0.7
1,091,854	+		GFF1087	0.81	-0.3
1,091,854	+		GFF1087	0.81	+0.1
1,091,854	+		GFF1087	0.81	+0.1
1,091,854	+		GFF1087	0.81	-0.6
1,091,854	+		GFF1087	0.81	+0.4
1,091,854	+		GFF1087	0.81	-1.7
1,091,854	+		GFF1087	0.81	-0.4
1,091,862	-		GFF1087	0.83	-0.3
1,091,862	-		GFF1087	0.83	-0.5
1,091,862	-		GFF1087	0.83	-0.7
1,091,862	-		GFF1087	0.83	+0.2
1,091,862	-		GFF1087	0.83	+1.3
1,091,862	-		GFF1087	0.83	+0.9
1,091,864	-		GFF1087	0.83	-1.2
1,091,864	-		GFF1087	0.83	+0.6
1,091,873	+		GFF1087	0.85	-0.7
1,091,873	+		GFF1087	0.85	+0.3
1,091,873	+		GFF1087	0.85	-0.1
1,091,904	+				+1.8
1,091,904	+				+0.8
1,091,904	-				-0.6
1,091,912	-				-1.3
1,091,912	-				-0.3
1,091,912	-				+1.0
1,091,920	+				-0.1
1,091,926	+				-1.5
1,091,928	-				-1.2
1,091,928	-				-1.3
1,091,928	-				-1.1
1,091,928	-				+0.2
1,091,929	+				+0.2
1,091,929	+				-1.5
1,091,931	+				+0.2
1,091,937	-				-0.0
1,091,939	+				+0.1
1,091,946	+				-0.7
1,091,946	+				-0.8
1,091,946	+				+0.1
1,091,946	+				-0.2
1,091,946	+				+0.4
1,091,946	+				-0.6
1,091,946	+				+0.1
1,091,946	+				+0.1
1,091,946	+				-1.4
1,091,946	+				-0.3
1,091,946	+				+1.0
1,091,946	+				-0.7
1,091,946	+				+0.5
1,091,946	+				+0.1
1,091,946	+				+1.1
1,091,946	+				-0.9
1,091,946	+				+1.3
1,091,951	+				-1.6
1,091,954	-				-1.3
1,091,954	-				+0.5
1,091,954	-				+0.3
1,091,954	-				+1.5
1,091,954	-				-0.1
1,091,954	-				+0.9
1,091,954	-				+0.9
1,091,954	-				+0.2
1,091,954	-				+0.3
1,091,954	-				-0.2
1,091,954	-				+0.6
1,091,954	-				-0.2
1,091,954	-				+0.2
1,091,954	-				+0.1
1,091,954	-				-1.0
1,091,954	-				-1.6
1,091,954	-				-0.8
1,091,954	-				+0.4
1,091,954	-				-0.0
1,091,956	+				-0.2
1,091,956	+				-1.3
1,091,956	+				-0.6
1,091,964	-				-0.3
1,091,964	-				-0.6
1,091,971	-				+0.2
1,091,981	+				-0.7
1,091,982	+				+0.8
1,091,990	-				+0.6
1,092,006	+				-0.4
1,092,010	+				-0.7
1,092,010	+				-0.8
1,092,010	+				-0.4
1,092,014	-				-0.6
1,092,014	-				-0.4
1,092,018	-				-1.1
1,092,018	-				-1.6
1,092,018	-				+0.3
1,092,018	-				-0.9
1,092,018	-				-1.4
1,092,020	+				+0.5
1,092,024	-				-0.3
1,092,028	-				-0.0
1,092,028	-				-0.4
1,092,042	+		GFF1088	0.13	-2.1
1,092,051	-		GFF1088	0.17	-0.3
1,092,107	+		GFF1088	0.41	+0.6
1,092,115	-		GFF1088	0.45	-1.5
1,092,122	-		GFF1088	0.48	+1.2
1,092,130	-		GFF1088	0.51	-0.1
1,092,132	+		GFF1088	0.52	+0.4
1,092,132	+		GFF1088	0.52	-0.7
1,092,137	+		GFF1088	0.54	+1.3
1,092,137	+		GFF1088	0.54	-0.2
1,092,137	+		GFF1088	0.54	+0.4
1,092,140	-		GFF1088	0.56	-1.2
1,092,140	-		GFF1088	0.56	-0.3
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1,092,173	-		GFF1088	0.70	-1.4
1,092,181	-		GFF1088	0.74	-0.7
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1,092,200	-		GFF1088	0.82	-0.6
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1,092,227	-				+0.7
1,092,228	+				+0.9
1,092,236	-				-1.8
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1,092,255	-				-0.4
1,092,272	-				-0.3
1,092,282	-				+0.6
1,092,321	+		GFF1089	0.18	+0.6
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1,092,544	+		GFF1089	0.66	-1.3
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1,092,632	-		GFF1089	0.85	-2.1
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1,092,664	-				-0.8
1,092,698	+				+0.1
1,092,698	+				+0.9
1,092,703	-				-1.8
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1,092,924	+				-0.7
1,092,940	-				-0.1