Strain Fitness in Sphingobium sp. HT1-2 around GFF1066

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,071,793	-		GFF1065	0.73	-0.4
1,071,806	-		GFF1065	0.74	+0.1
1,071,806	-		GFF1065	0.74	+0.0
1,071,835	+		GFF1065	0.74	-0.7
1,071,846	+		GFF1065	0.75	+0.3
1,071,854	-		GFF1065	0.75	-1.7
1,071,869	-		GFF1065	0.75	-0.9
1,071,876	+		GFF1065	0.76	+1.7
1,071,901	+		GFF1065	0.76	+0.4
1,072,013	-		GFF1065	0.80	+0.2
1,072,028	+		GFF1065	0.80	+0.3
1,072,028	+		GFF1065	0.80	+0.1
1,072,036	-		GFF1065	0.80	-0.6
1,072,036	-		GFF1065	0.80	+0.3
1,072,041	-		GFF1065	0.80	-2.3
1,072,060	-		GFF1065	0.81	-1.3
1,072,067	+		GFF1065	0.81	-0.4
1,072,067	+		GFF1065	0.81	+0.1
1,072,067	+		GFF1065	0.81	-0.9
1,072,067	+		GFF1065	0.81	-0.1
1,072,067	+		GFF1065	0.81	-0.2
1,072,067	+		GFF1065	0.81	+0.3
1,072,067	+		GFF1065	0.81	-1.0
1,072,067	+		GFF1065	0.81	-0.2
1,072,067	+		GFF1065	0.81	+1.2
1,072,067	+		GFF1065	0.81	-0.4
1,072,075	-		GFF1065	0.81	+1.4
1,072,075	-		GFF1065	0.81	+0.2
1,072,082	+		GFF1065	0.82	+1.0
1,072,092	+		GFF1065	0.82	+0.3
1,072,113	+		GFF1065	0.82	-0.6
1,072,113	+		GFF1065	0.82	+0.2
1,072,121	-		GFF1065	0.83	+0.8
1,072,121	-		GFF1065	0.83	-0.7
1,072,128	-		GFF1065	0.83	+0.3
1,072,128	-		GFF1065	0.83	-0.1
1,072,130	+		GFF1065	0.83	+0.8
1,072,138	+		GFF1065	0.83	-1.7
1,072,138	-		GFF1065	0.83	-1.1
1,072,165	+		GFF1065	0.84	-1.4
1,072,171	+		GFF1065	0.84	+0.0
1,072,178	-		GFF1065	0.84	-1.1
1,072,178	-		GFF1065	0.84	-0.1
1,072,227	+		GFF1065	0.86	-1.0
1,072,227	+		GFF1065	0.86	+0.6
1,072,235	-		GFF1065	0.86	-1.0
1,072,283	+		GFF1065	0.87	+0.8
1,072,283	+		GFF1065	0.87	-0.1
1,072,285	+		GFF1065	0.87	-0.8
1,072,285	+		GFF1065	0.87	-0.7
1,072,285	+		GFF1065	0.87	+0.9
1,072,285	+		GFF1065	0.87	-1.3
1,072,285	+		GFF1065	0.87	-0.1
1,072,289	-		GFF1065	0.88	-1.6
1,072,291	+		GFF1065	0.88	-0.1
1,072,291	-		GFF1065	0.88	+0.7
1,072,291	-		GFF1065	0.88	+0.3
1,072,295	+		GFF1065	0.88	-0.8
1,072,295	+		GFF1065	0.88	+0.2
1,072,295	+		GFF1065	0.88	-0.7
1,072,295	+		GFF1065	0.88	-1.4
1,072,295	+		GFF1065	0.88	-1.1
1,072,298	-		GFF1065	0.88	-0.6
1,072,303	-		GFF1065	0.88	+1.2
1,072,303	-		GFF1065	0.88	+0.2
1,072,303	-		GFF1065	0.88	+0.0
1,072,303	-		GFF1065	0.88	+0.3
1,072,303	-		GFF1065	0.88	-0.5
1,072,303	-		GFF1065	0.88	-1.3
1,072,303	-		GFF1065	0.88	+1.1
1,072,303	-		GFF1065	0.88	+0.4
1,072,315	+		GFF1065	0.88	-0.3
1,072,315	+		GFF1065	0.88	+0.5
1,072,315	+		GFF1065	0.88	-0.6
1,072,315	+		GFF1065	0.88	-1.4
1,072,315	+		GFF1065	0.88	-1.9
1,072,315	+		GFF1065	0.88	+0.9
1,072,323	-		GFF1065	0.89	-0.3
1,072,323	-		GFF1065	0.89	+0.2
1,072,323	-		GFF1065	0.89	+1.1
1,072,361	-		GFF1065	0.90	+1.1
1,072,361	-		GFF1065	0.90	+0.5
1,072,395	+				-1.8
1,072,395	+				-1.7
1,072,403	-				-0.9
1,072,403	-				+0.1
1,072,406	+				+0.6
1,072,430	+				-0.5
1,072,438	-				-0.1
1,072,440	+				-2.3
1,072,447	+				-0.2
1,072,453	+				-1.9
1,072,466	-				-0.5
1,072,476	-				+1.7
1,072,506	+				+0.4
1,072,506	+				+0.2
1,072,506	+				+0.5
1,072,524	-				+0.8
1,072,542	+				-1.2
1,072,549	+				-2.0
1,072,550	-				+0.7
1,072,565	+				-3.1
1,072,567	+				-0.0
1,072,581	-				-1.9
1,072,587	-				-0.5
1,072,599	-				-0.5
1,072,633	+				-0.1
1,072,637	+				+0.1
1,072,660	+				-0.8
1,072,663	+				-1.6
1,072,672	+				-1.5
1,072,685	-				+0.4
1,072,689	+				+0.7
1,072,695	-				-0.0
1,072,716	+				-1.7
1,072,716	+				-0.2
1,072,716	+				+0.9
1,072,724	-				+0.9
1,072,724	-				+0.7
1,072,766	-				-0.9
1,072,782	+				-0.2
1,072,782	+				-0.5
1,072,782	+				-0.0
1,072,783	-				-0.0
1,072,784	+				-2.2
1,072,813	-				+1.1
1,072,859	+				-0.4
1,072,859	+				+0.3
1,072,867	-				-0.4
1,072,867	-				-1.6
1,072,867	-				-1.4
1,072,873	-				-2.5
1,072,880	-				-2.1
1,072,887	+				-1.3
1,072,905	+		GFF1066	0.10	-0.5
1,072,913	-		GFF1066	0.11	+0.5
1,072,948	+		GFF1066	0.14	+0.8
1,072,948	+		GFF1066	0.14	-1.1
1,072,948	+		GFF1066	0.14	+0.9
1,072,948	+		GFF1066	0.14	-1.7
1,072,955	+		GFF1066	0.15	+0.5
1,072,956	-		GFF1066	0.15	-0.3
1,072,956	-		GFF1066	0.15	-0.3
1,072,956	-		GFF1066	0.15	-0.5
1,072,956	-		GFF1066	0.15	+0.1
1,072,963	-		GFF1066	0.15	+0.8
1,072,963	-		GFF1066	0.15	+1.1
1,072,966	+		GFF1066	0.16	-0.4
1,072,966	+		GFF1066	0.16	-0.1
1,072,966	+		GFF1066	0.16	-0.4
1,072,966	+		GFF1066	0.16	+0.5
1,072,979	-		GFF1066	0.17	+0.2
1,072,981	+		GFF1066	0.17	+0.2
1,072,989	-		GFF1066	0.18	+0.4
1,073,005	+		GFF1066	0.19	-0.1
1,073,035	-		GFF1066	0.22	+0.3
1,073,035	-		GFF1066	0.22	+0.5
1,073,035	-		GFF1066	0.22	-1.6
1,073,039	+		GFF1066	0.22	-1.0
1,073,042	-		GFF1066	0.22	-0.4
1,073,049	+		GFF1066	0.23	+0.6
1,073,050	+		GFF1066	0.23	-1.8
1,073,104	-		GFF1066	0.28	-3.1
1,073,106	-		GFF1066	0.28	-0.1
1,073,106	-		GFF1066	0.28	+1.0
1,073,113	+		GFF1066	0.29	+0.8
1,073,130	+		GFF1066	0.30	+1.2
1,073,130	+		GFF1066	0.30	+0.6
1,073,148	+		GFF1066	0.32	+0.2
1,073,148	+		GFF1066	0.32	+0.5
1,073,148	+		GFF1066	0.32	-1.4
1,073,148	+		GFF1066	0.32	-1.2
1,073,148	+		GFF1066	0.32	+0.1
1,073,148	+		GFF1066	0.32	-1.5
1,073,148	+		GFF1066	0.32	-1.1
1,073,148	+		GFF1066	0.32	-0.8
1,073,148	+		GFF1066	0.32	-0.8
1,073,148	+		GFF1066	0.32	-1.2
1,073,148	+		GFF1066	0.32	-0.1
1,073,148	+		GFF1066	0.32	-0.2
1,073,148	+		GFF1066	0.32	+0.5
1,073,148	+		GFF1066	0.32	-0.8
1,073,148	+		GFF1066	0.32	+1.3
1,073,148	+		GFF1066	0.32	+0.3
1,073,148	+		GFF1066	0.32	-0.7
1,073,148	+		GFF1066	0.32	+1.7
1,073,148	+		GFF1066	0.32	-1.6
1,073,148	+		GFF1066	0.32	-1.3
1,073,148	+		GFF1066	0.32	+0.5
1,073,150	+		GFF1066	0.32	-1.3
1,073,150	+		GFF1066	0.32	+0.4
1,073,150	+		GFF1066	0.32	-0.1
1,073,150	+		GFF1066	0.32	-1.3
1,073,151	-		GFF1066	0.32	-0.7
1,073,156	-		GFF1066	0.33	-1.9
1,073,156	-		GFF1066	0.33	+0.1
1,073,156	-		GFF1066	0.33	-2.1
1,073,156	-		GFF1066	0.33	+0.5
1,073,156	-		GFF1066	0.33	-0.9
1,073,156	-		GFF1066	0.33	+0.4
1,073,156	-		GFF1066	0.33	+0.5
1,073,156	-		GFF1066	0.33	-0.5
1,073,156	-		GFF1066	0.33	-0.0
1,073,156	-		GFF1066	0.33	-1.9
1,073,156	-		GFF1066	0.33	-1.3
1,073,156	-		GFF1066	0.33	+0.7
1,073,156	-		GFF1066	0.33	-1.1
1,073,156	-		GFF1066	0.33	+0.9
1,073,156	-		GFF1066	0.33	-0.5
1,073,156	-		GFF1066	0.33	-0.4
1,073,156	-		GFF1066	0.33	+0.2
1,073,156	-		GFF1066	0.33	+0.7
1,073,156	-		GFF1066	0.33	-0.2
1,073,156	-		GFF1066	0.33	-0.9
1,073,156	-		GFF1066	0.33	-0.7
1,073,156	-		GFF1066	0.33	-0.4
1,073,156	-		GFF1066	0.33	-0.4
1,073,158	-		GFF1066	0.33	-0.3
1,073,158	-		GFF1066	0.33	-0.7
1,073,158	-		GFF1066	0.33	+1.0
1,073,176	+		GFF1066	0.34	+0.7
1,073,176	+		GFF1066	0.34	-1.2
1,073,176	+		GFF1066	0.34	+0.9
1,073,176	+		GFF1066	0.34	-1.4
1,073,176	+		GFF1066	0.34	+1.2
1,073,179	-		GFF1066	0.35	-0.8
1,073,184	-		GFF1066	0.35	-0.3
1,073,184	-		GFF1066	0.35	+0.1
1,073,184	-		GFF1066	0.35	-1.0
1,073,205	+		GFF1066	0.37	+0.2
1,073,205	+		GFF1066	0.37	+0.7
1,073,213	-		GFF1066	0.38	-2.3
1,073,213	-		GFF1066	0.38	+0.7
1,073,229	+		GFF1066	0.39	-0.6
1,073,229	+		GFF1066	0.39	+1.0
1,073,237	-		GFF1066	0.40	-0.1
1,073,256	+		GFF1066	0.42	-1.2
1,073,256	+		GFF1066	0.42	-0.2
1,073,264	-		GFF1066	0.42	-0.1
1,073,306	+		GFF1066	0.46	-0.1
1,073,313	+		GFF1066	0.47	-0.1
1,073,313	+		GFF1066	0.47	+0.2
1,073,313	+		GFF1066	0.47	-0.8
1,073,313	+		GFF1066	0.47	-0.6
1,073,321	-		GFF1066	0.47	-1.2
1,073,321	-		GFF1066	0.47	-0.5
1,073,321	-		GFF1066	0.47	-0.9
1,073,336	-		GFF1066	0.49	-0.1
1,073,360	-		GFF1066	0.51	-1.2
1,073,361	+		GFF1066	0.51	-1.2
1,073,361	+		GFF1066	0.51	-0.6
1,073,369	-		GFF1066	0.52	+0.8
1,073,394	+		GFF1066	0.54	-0.3
1,073,411	+		GFF1066	0.55	-1.0
1,073,419	-		GFF1066	0.56	-0.3
1,073,420	-		GFF1066	0.56	-0.4
1,073,439	+		GFF1066	0.58	+0.1
1,073,447	-		GFF1066	0.59	+0.2
1,073,447	-		GFF1066	0.59	-0.2
1,073,469	-		GFF1066	0.61	+0.9
1,073,469	-		GFF1066	0.61	+0.3
1,073,471	-		GFF1066	0.61	-1.2
1,073,473	+		GFF1066	0.61	-1.5
1,073,477	+		GFF1066	0.61	-2.3
1,073,481	-		GFF1066	0.62	-0.1
1,073,481	-		GFF1066	0.62	-0.7
1,073,481	-		GFF1066	0.62	-0.4
1,073,497	+		GFF1066	0.63	-0.0
1,073,534	-		GFF1066	0.66	+0.4
1,073,539	-		GFF1066	0.67	+0.9
1,073,543	+		GFF1066	0.67	+1.3
1,073,581	+		GFF1066	0.71	-0.7
1,073,581	-		GFF1066	0.71	+0.5
1,073,610	+		GFF1066	0.73	+0.1
1,073,610	+		GFF1066	0.73	+0.6
1,073,610	+		GFF1066	0.73	+0.0
1,073,618	-		GFF1066	0.74	-1.5
1,073,618	-		GFF1066	0.74	-0.2
1,073,618	-		GFF1066	0.74	-0.4
1,073,618	-		GFF1066	0.74	+0.2
1,073,618	-		GFF1066	0.74	+1.3
1,073,641	+		GFF1066	0.76	+0.4
1,073,641	+		GFF1066	0.76	-0.8
1,073,641	+		GFF1066	0.76	-1.1
1,073,649	-		GFF1066	0.77	+0.7
1,073,686	-		GFF1066	0.80	-0.9
1,073,690	+		GFF1066	0.80	-3.1
1,073,693	-		GFF1066	0.81	+0.8
1,073,697	+		GFF1066	0.81	-0.5
1,073,697	+		GFF1066	0.81	+0.4
1,073,699	-		GFF1066	0.81	+0.2
1,073,705	-		GFF1066	0.82	-0.4
1,073,705	-		GFF1066	0.82	-1.0
1,073,705	-		GFF1066	0.82	-2.3
1,073,710	+		GFF1066	0.82	-0.5
1,073,714	+		GFF1066	0.83	-0.5
1,073,714	+		GFF1066	0.83	-0.4
1,073,714	+		GFF1066	0.83	-0.6
1,073,718	-		GFF1066	0.83	+0.3
1,073,718	-		GFF1066	0.83	-1.3
1,073,718	-		GFF1066	0.83	-2.5
1,073,760	+		GFF1066	0.87	-0.4
1,073,760	+		GFF1066	0.87	-0.4
1,073,815	-				+0.2
1,073,859	-				+0.1
1,073,865	-				-0.6
1,073,878	-				+0.6
1,073,880	+				-0.1
1,073,880	+				+0.1
1,073,885	+				+0.1
1,073,888	-				-0.7
1,073,890	+				-1.0
1,073,890	+				+0.9
1,073,893	-				-1.0
1,073,895	+				-0.4
1,073,898	-				-1.0
1,073,902	+				-0.6
1,073,903	-				-0.7
1,073,910	-				+0.2
1,073,910	-				+0.1
1,073,910	-				-0.4
1,073,912	+				-2.5
1,073,920	-				-1.4
1,073,920	-				-1.1
1,073,925	-				-1.3
1,073,944	-				-1.2
1,073,975	-				+1.0
1,073,980	-				+0.7
1,073,980	-				-0.9
1,074,010	+				+1.1
1,074,015	+				-0.5
1,074,015	+				-1.5
1,074,015	+				+0.3
1,074,015	+				-1.7
1,074,022	+				-0.6
1,074,023	-				+1.1
1,074,023	-				-1.1
1,074,023	-				+0.4
1,074,031	-				+1.0
1,074,033	+				-0.3
1,074,033	+				-0.9
1,074,040	-				+0.6
1,074,041	+				+0.8
1,074,041	+				-2.0
1,074,041	-				+0.4
1,074,041	-				-0.0
1,074,041	-				-1.5
1,074,042	+				-1.1
1,074,049	-				+0.6
1,074,049	-				-0.3
1,074,051	-		GFF1067	0.10	-0.4
1,074,051	-		GFF1067	0.10	-0.6
1,074,051	-		GFF1067	0.10	+0.6
1,074,057	+		GFF1067	0.10	+0.0
1,074,058	+		GFF1067	0.10	-1.7
1,074,058	-		GFF1067	0.10	-3.0
1,074,058	-		GFF1067	0.10	-1.7
1,074,064	-		GFF1067	0.11	+0.3
1,074,064	-		GFF1067	0.11	-0.7
1,074,110	+		GFF1067	0.14	-1.1
1,074,164	+		GFF1067	0.18	-0.1
1,074,184	-		GFF1067	0.19	+1.0
1,074,202	+		GFF1067	0.20	+0.2
1,074,205	+		GFF1067	0.21	-0.4
1,074,215	+		GFF1067	0.21	-2.5
1,074,220	-		GFF1067	0.22	-2.1
1,074,222	+		GFF1067	0.22	+0.8
1,074,222	+		GFF1067	0.22	-0.9
1,074,222	+		GFF1067	0.22	+0.1
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