Strain Fitness in Sphingobium sp. HT1-2 around GFF1045

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,049,335	+		GFF1044	0.35	+0.5
1,049,341	+		GFF1044	0.35	+0.1
1,049,343	-		GFF1044	0.35	+0.1
1,049,348	-		GFF1044	0.36	-0.6
1,049,348	-		GFF1044	0.36	-1.2
1,049,349	-		GFF1044	0.36	-0.4
1,049,351	+		GFF1044	0.36	-0.5
1,049,352	+		GFF1044	0.36	-0.3
1,049,361	+		GFF1044	0.37	+0.2
1,049,370	+		GFF1044	0.37	-0.3
1,049,370	+		GFF1044	0.37	-1.2
1,049,370	+		GFF1044	0.37	+0.9
1,049,385	+		GFF1044	0.38	-0.3
1,049,385	+		GFF1044	0.38	-0.0
1,049,385	+		GFF1044	0.38	-1.4
1,049,385	+		GFF1044	0.38	-1.1
1,049,385	+		GFF1044	0.38	+0.4
1,049,385	+		GFF1044	0.38	-1.5
1,049,385	+		GFF1044	0.38	-2.4
1,049,385	+		GFF1044	0.38	+0.9
1,049,385	+		GFF1044	0.38	-0.7
1,049,385	+		GFF1044	0.38	-0.6
1,049,385	+		GFF1044	0.38	-0.4
1,049,385	-		GFF1044	0.38	-0.5
1,049,388	-		GFF1044	0.38	-0.4
1,049,393	+		GFF1044	0.39	-1.5
1,049,393	-		GFF1044	0.39	+1.1
1,049,393	-		GFF1044	0.39	+0.1
1,049,393	-		GFF1044	0.39	-1.1
1,049,393	-		GFF1044	0.39	-2.2
1,049,393	-		GFF1044	0.39	-1.5
1,049,393	-		GFF1044	0.39	-1.3
1,049,412	-		GFF1044	0.40	-1.8
1,049,412	-		GFF1044	0.40	+0.1
1,049,414	+		GFF1044	0.40	-0.6
1,049,414	+		GFF1044	0.40	-0.1
1,049,466	-		GFF1044	0.44	-2.7
1,049,491	-		GFF1044	0.45	+0.2
1,049,498	+		GFF1044	0.46	+1.0
1,049,499	+		GFF1044	0.46	+1.3
1,049,499	+		GFF1044	0.46	-1.7
1,049,506	-		GFF1044	0.46	+0.3
1,049,507	-		GFF1044	0.46	+0.5
1,049,514	+		GFF1044	0.47	-1.0
1,049,514	+		GFF1044	0.47	-0.1
1,049,514	+		GFF1044	0.47	+0.3
1,049,514	+		GFF1044	0.47	-1.7
1,049,522	-		GFF1044	0.48	-1.3
1,049,522	-		GFF1044	0.48	+0.7
1,049,522	-		GFF1044	0.48	+0.3
1,049,527	-		GFF1044	0.48	-1.0
1,049,542	+		GFF1044	0.49	-0.6
1,049,592	+		GFF1044	0.52	-0.2
1,049,592	-		GFF1044	0.52	+0.3
1,049,619	+		GFF1044	0.54	+0.8
1,049,624	+		GFF1044	0.54	+0.1
1,049,632	-		GFF1044	0.55	-1.3
1,049,645	+		GFF1044	0.56	-1.7
1,049,670	-		GFF1044	0.57	-3.5
1,049,702	-		GFF1044	0.60	+0.3
1,049,734	-		GFF1044	0.62	-0.9
1,049,734	-		GFF1044	0.62	+0.3
1,049,734	-		GFF1044	0.62	+0.3
1,049,740	+		GFF1044	0.62	-0.0
1,049,740	-		GFF1044	0.62	+0.0
1,049,741	-		GFF1044	0.62	+1.5
1,049,773	+		GFF1044	0.64	-0.3
1,049,851	+		GFF1044	0.70	+0.2
1,049,851	+		GFF1044	0.70	-1.7
1,049,851	+		GFF1044	0.70	+0.9
1,049,856	+		GFF1044	0.70	+0.3
1,049,859	-		GFF1044	0.70	+0.6
1,049,859	-		GFF1044	0.70	-0.8
1,049,859	-		GFF1044	0.70	-1.6
1,049,870	+		GFF1044	0.71	-0.9
1,049,870	+		GFF1044	0.71	-1.0
1,049,870	+		GFF1044	0.71	+1.0
1,049,873	-		GFF1044	0.71	-0.7
1,049,878	-		GFF1044	0.72	+0.3
1,049,878	-		GFF1044	0.72	-0.5
1,049,910	+		GFF1044	0.74	-1.7
1,049,922	+		GFF1044	0.74	-0.8
1,049,923	-		GFF1044	0.75	-0.9
1,049,925	-		GFF1044	0.75	+0.6
1,049,927	+		GFF1044	0.75	-0.3
1,049,983	+		GFF1044	0.79	-1.4
1,049,991	-		GFF1044	0.79	-1.6
1,049,991	-		GFF1044	0.79	-1.4
1,050,030	+		GFF1044	0.82	-1.6
1,050,030	+		GFF1044	0.82	-0.7
1,050,031	-		GFF1044	0.82	-1.3
1,050,031	-		GFF1044	0.82	+1.1
1,050,031	-		GFF1044	0.82	-0.7
1,050,073	+		GFF1044	0.85	+0.3
1,050,103	+		GFF1044	0.87	+0.4
1,050,108	+		GFF1044	0.87	-0.1
1,050,108	+		GFF1044	0.87	-1.3
1,050,108	+		GFF1044	0.87	-0.3
1,050,108	+		GFF1044	0.87	+0.6
1,050,108	+		GFF1044	0.87	-0.1
1,050,108	+		GFF1044	0.87	-0.7
1,050,108	+		GFF1044	0.87	-1.2
1,050,110	+		GFF1044	0.87	-0.1
1,050,111	-		GFF1044	0.87	-0.5
1,050,111	-		GFF1044	0.87	-1.0
1,050,111	-		GFF1044	0.87	-0.1
1,050,116	-		GFF1044	0.88	-0.1
1,050,116	-		GFF1044	0.88	+0.1
1,050,116	-		GFF1044	0.88	-0.5
1,050,116	-		GFF1044	0.88	+0.3
1,050,116	-		GFF1044	0.88	-1.0
1,050,116	-		GFF1044	0.88	+0.8
1,050,116	-		GFF1044	0.88	-2.5
1,050,116	-		GFF1044	0.88	+0.1
1,050,116	-		GFF1044	0.88	-1.3
1,050,118	-		GFF1044	0.88	-1.2
1,050,128	+		GFF1044	0.88	-0.7
1,050,128	+		GFF1044	0.88	+0.1
1,050,128	+		GFF1044	0.88	+0.2
1,050,130	-		GFF1044	0.89	-0.5
1,050,133	+		GFF1044	0.89	-1.7
1,050,136	-		GFF1044	0.89	+0.8
1,050,136	-		GFF1044	0.89	-0.7
1,050,136	-		GFF1044	0.89	+0.3
1,050,136	-		GFF1044	0.89	-0.5
1,050,136	-		GFF1044	0.89	-1.2
1,050,143	-		GFF1044	0.89	-1.8
1,050,143	-		GFF1044	0.89	-1.9
1,050,154	+				-0.2
1,050,169	-				+0.6
1,050,173	+				-0.8
1,050,173	+				-1.0
1,050,173	+				-0.1
1,050,173	+				-1.3
1,050,173	+				+0.7
1,050,179	-				-0.4
1,050,181	-				-1.9
1,050,181	-				-0.3
1,050,181	-				+1.1
1,050,181	-				-0.1
1,050,181	-				-1.9
1,050,181	-				+0.1
1,050,220	-				-0.4
1,050,226	-				-2.3
1,050,226	-				-0.0
1,050,280	-				-0.6
1,050,282	-				-0.0
1,050,288	+				+0.9
1,050,310	+				-0.2
1,050,329	+				-0.2
1,050,338	-				+0.7
1,050,338	-				-1.9
1,050,339	-				+0.8
1,050,339	-				-0.2
1,050,343	+				+0.5
1,050,351	-				+0.7
1,050,383	-				+0.5
1,050,383	-				-1.3
1,050,383	-				-0.0
1,050,388	+				-0.7
1,050,388	+				+0.3
1,050,388	+				+0.3
1,050,388	+				+0.4
1,050,388	+				+0.5
1,050,388	+				-0.1
1,050,388	+				-1.5
1,050,388	+				-1.6
1,050,388	+				-0.4
1,050,388	+				-1.0
1,050,388	+				-1.7
1,050,388	+				-2.8
1,050,396	-				-0.5
1,050,396	-				+1.4
1,050,396	-				-1.4
1,050,396	-				-0.7
1,050,396	-				-0.9
1,050,396	-				-0.3
1,050,396	-				-0.8
1,050,417	+				-0.9
1,050,417	+				+0.2
1,050,420	-				+1.0
1,050,425	-				-0.8
1,050,425	-				+0.6
1,050,425	-				-0.5
1,050,425	-				+0.4
1,050,427	+				-1.2
1,050,430	-				+0.6
1,050,455	-				-0.4
1,050,488	-		GFF1045	0.12	+0.6
1,050,488	-		GFF1045	0.12	+0.6
1,050,518	-		GFF1045	0.14	+1.3
1,050,569	+		GFF1045	0.18	+0.7
1,050,587	+		GFF1045	0.20	-0.1
1,050,598	+		GFF1045	0.20	+0.3
1,050,602	+		GFF1045	0.21	+0.0
1,050,636	+		GFF1045	0.23	-2.3
1,050,656	+		GFF1045	0.25	-0.6
1,050,656	+		GFF1045	0.25	-0.0
1,050,656	+		GFF1045	0.25	-0.5
1,050,685	+		GFF1045	0.27	+0.3
1,050,686	+		GFF1045	0.27	+0.0
1,050,686	+		GFF1045	0.27	-1.0
1,050,708	+		GFF1045	0.29	+0.1
1,050,731	-		GFF1045	0.31	+1.7
1,050,737	+		GFF1045	0.31	-1.8
1,050,741	-		GFF1045	0.31	-0.0
1,050,757	+		GFF1045	0.33	+1.0
1,050,757	+		GFF1045	0.33	-0.9
1,050,765	-		GFF1045	0.33	-1.1
1,050,765	-		GFF1045	0.33	+0.4
1,050,769	+		GFF1045	0.34	+0.9
1,050,769	+		GFF1045	0.34	-0.2
1,050,774	+		GFF1045	0.34	-0.0
1,050,777	-		GFF1045	0.34	+0.7
1,050,787	-		GFF1045	0.35	-0.6
1,050,859	+		GFF1045	0.40	+1.0
1,050,859	+		GFF1045	0.40	-0.2
1,050,915	-		GFF1045	0.45	-0.0
1,050,915	-		GFF1045	0.45	-0.7
1,050,920	-		GFF1045	0.45	-1.7
1,050,978	-		GFF1045	0.50	+0.3
1,050,983	-		GFF1045	0.50	+0.8
1,051,005	+		GFF1045	0.52	-0.3
1,051,013	-		GFF1045	0.52	+0.8
1,051,013	-		GFF1045	0.52	-0.1
1,051,030	+		GFF1045	0.54	+1.5
1,051,045	-		GFF1045	0.55	-1.9
1,051,051	+		GFF1045	0.55	+0.5
1,051,065	+		GFF1045	0.56	-0.1
1,051,065	+		GFF1045	0.56	-0.4
1,051,070	+		GFF1045	0.57	+0.4
1,051,120	+		GFF1045	0.61	-0.8
1,051,125	+		GFF1045	0.61	-0.2
1,051,128	-		GFF1045	0.61	+0.4
1,051,128	-		GFF1045	0.61	+0.5
1,051,130	+		GFF1045	0.61	-1.6
1,051,133	-		GFF1045	0.62	+0.7
1,051,182	+		GFF1045	0.65	-0.6
1,051,184	+		GFF1045	0.66	-0.8
1,051,184	+		GFF1045	0.66	+0.4
1,051,184	+		GFF1045	0.66	-0.3
1,051,189	+		GFF1045	0.66	+1.2
1,051,189	+		GFF1045	0.66	-2.1
1,051,192	-		GFF1045	0.66	-0.2
1,051,202	-		GFF1045	0.67	-0.1
1,051,202	-		GFF1045	0.67	+0.2
1,051,202	-		GFF1045	0.67	+0.5
1,051,210	+		GFF1045	0.68	-0.2
1,051,217	+		GFF1045	0.68	-0.0
1,051,222	-		GFF1045	0.68	-1.6
1,051,231	+		GFF1045	0.69	-0.6
1,051,233	-		GFF1045	0.69	+0.1
1,051,247	+		GFF1045	0.70	-1.0
1,051,295	+		GFF1045	0.74	-2.3
1,051,295	+		GFF1045	0.74	-0.1
1,051,295	+		GFF1045	0.74	+0.2
1,051,303	-		GFF1045	0.75	+0.2
1,051,303	-		GFF1045	0.75	+1.6
1,051,303	-		GFF1045	0.75	-2.6
1,051,303	-		GFF1045	0.75	+0.2
1,051,305	+		GFF1045	0.75	+1.4
1,051,308	-		GFF1045	0.75	-1.8
1,051,310	-		GFF1045	0.75	+0.1
1,051,323	-		GFF1045	0.76	+0.3
1,051,323	-		GFF1045	0.76	+0.1
1,051,331	-		GFF1045	0.77	+0.0
1,051,341	-		GFF1045	0.78	-2.3
1,051,362	-		GFF1045	0.79	+0.1
1,051,374	+		GFF1045	0.80	-1.2
1,051,381	-		GFF1045	0.81	-0.9
1,051,410	+		GFF1045	0.83	+1.2
1,051,431	+		GFF1045	0.85	-0.3
1,051,431	-		GFF1045	0.85	+0.9
1,051,433	+		GFF1045	0.85	+0.1
1,051,433	+		GFF1045	0.85	-1.2
1,051,433	+		GFF1045	0.85	-0.3
1,051,433	+		GFF1045	0.85	+0.3
1,051,433	+		GFF1045	0.85	+0.8
1,051,433	+		GFF1045	0.85	-0.3
1,051,433	+		GFF1045	0.85	-1.2
1,051,433	+		GFF1045	0.85	+1.7
1,051,433	+		GFF1045	0.85	-1.5
1,051,433	+		GFF1045	0.85	-2.0
1,051,435	+		GFF1045	0.85	+0.2
1,051,437	-		GFF1045	0.85	-1.1
1,051,440	+		GFF1045	0.85	+1.4
1,051,440	+		GFF1045	0.85	+2.0
1,051,440	+		GFF1045	0.85	+0.2
1,051,440	+		GFF1045	0.85	-1.1
1,051,440	+		GFF1045	0.85	-0.1
1,051,441	-		GFF1045	0.85	+0.2
1,051,441	-		GFF1045	0.85	-0.8
1,051,441	-		GFF1045	0.85	-1.3
1,051,441	-		GFF1045	0.85	-0.0
1,051,442	+		GFF1045	0.85	+0.3
1,051,442	+		GFF1045	0.85	-1.4
1,051,448	-		GFF1045	0.86	+0.9
1,051,450	-		GFF1045	0.86	-0.4
1,051,508	+				+1.1
1,051,508	+				+0.1
1,051,513	+				-0.1
1,051,521	-				-1.6
1,051,605	+				+0.8
1,051,614	-				-0.2
1,051,626	+				-0.3
1,051,626	+				+0.2
1,051,634	+				-0.9
1,051,641	-				+0.5
1,051,722	-				-1.3
1,051,758	+		GFF1046	0.11	-0.2
1,051,766	-		GFF1046	0.12	-0.0
1,051,768	+		GFF1046	0.12	+1.4
1,051,768	+		GFF1046	0.12	-1.3
1,051,776	-		GFF1046	0.13	+0.0
1,051,776	-		GFF1046	0.13	-0.2
1,051,776	-		GFF1046	0.13	-1.7
1,051,776	-		GFF1046	0.13	-2.0
1,051,776	-		GFF1046	0.13	-0.9
1,051,776	-		GFF1046	0.13	-0.3
1,051,785	+		GFF1046	0.13	-0.1
1,051,798	-		GFF1046	0.15	+0.5
1,051,813	+		GFF1046	0.16	+0.3
1,051,827	+		GFF1046	0.18	-1.1
1,051,835	-		GFF1046	0.18	-0.4
1,051,839	+		GFF1046	0.19	-0.4
1,051,839	+		GFF1046	0.19	-0.2
1,051,839	+		GFF1046	0.19	+1.2
1,051,839	+		GFF1046	0.19	-0.2
1,051,847	-		GFF1046	0.20	-0.5
1,051,847	-		GFF1046	0.20	+0.2
1,051,901	+		GFF1046	0.25	-1.6
1,051,910	-		GFF1046	0.26	+0.6
1,051,910	-		GFF1046	0.26	+0.6
1,051,929	+		GFF1046	0.28	-0.2
1,051,929	+		GFF1046	0.28	-0.4
1,051,929	+		GFF1046	0.28	+1.2
1,051,930	-		GFF1046	0.28	+0.9
1,051,937	-		GFF1046	0.28	-0.7
1,051,937	-		GFF1046	0.28	-1.2
1,051,937	-		GFF1046	0.28	-1.2
1,051,946	-		GFF1046	0.29	-0.1
1,051,951	-		GFF1046	0.30	+1.4
1,051,951	-		GFF1046	0.30	-1.4
1,051,956	-		GFF1046	0.30	-0.4
1,051,956	-		GFF1046	0.30	-0.5
1,051,968	-		GFF1046	0.31	+0.7
1,051,973	-		GFF1046	0.32	+1.3
1,051,973	-		GFF1046	0.32	-0.4
1,051,973	-		GFF1046	0.32	-0.9
1,051,977	+		GFF1046	0.32	+0.2
1,052,006	+		GFF1046	0.35	-2.4
1,052,006	+		GFF1046	0.35	-2.1
1,052,006	+		GFF1046	0.35	-0.3
1,052,014	-		GFF1046	0.36	-1.3
1,052,014	-		GFF1046	0.36	-0.9
1,052,014	-		GFF1046	0.36	-0.1
1,052,014	-		GFF1046	0.36	+1.0
1,052,014	-		GFF1046	0.36	-0.4
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