Strain Fitness in Sphingobium sp. HT1-2 around GFF1029

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,029,389	-		GFF1028	0.18	-0.6
1,029,428	+		GFF1028	0.21	+0.8
1,029,428	+		GFF1028	0.21	+1.4
1,029,436	-		GFF1028	0.22	+0.0
1,029,436	-		GFF1028	0.22	-0.6
1,029,436	-		GFF1028	0.22	-2.6
1,029,455	+		GFF1028	0.23	+1.1
1,029,455	+		GFF1028	0.23	+0.5
1,029,455	+		GFF1028	0.23	-1.4
1,029,455	+		GFF1028	0.23	+1.3
1,029,455	+		GFF1028	0.23	-2.8
1,029,455	+		GFF1028	0.23	+0.4
1,029,455	+		GFF1028	0.23	-1.4
1,029,455	+		GFF1028	0.23	-2.2
1,029,455	+		GFF1028	0.23	-0.8
1,029,455	+		GFF1028	0.23	+0.7
1,029,461	+		GFF1028	0.24	-0.5
1,029,463	-		GFF1028	0.24	+0.9
1,029,463	-		GFF1028	0.24	-1.7
1,029,463	-		GFF1028	0.24	-1.0
1,029,463	-		GFF1028	0.24	+0.1
1,029,464	-		GFF1028	0.24	-0.1
1,029,466	+		GFF1028	0.24	-1.5
1,029,468	-		GFF1028	0.25	-1.6
1,029,468	-		GFF1028	0.25	-0.5
1,029,478	+		GFF1028	0.25	+0.7
1,029,478	-		GFF1028	0.25	-0.0
1,029,492	-		GFF1028	0.26	+0.2
1,029,529	+		GFF1028	0.30	-1.1
1,029,537	-		GFF1028	0.30	-0.3
1,029,545	+		GFF1028	0.31	-0.9
1,029,553	-		GFF1028	0.32	+0.7
1,029,556	+		GFF1028	0.32	-0.3
1,029,571	-		GFF1028	0.33	-2.1
1,029,591	+		GFF1028	0.35	-0.4
1,029,599	-		GFF1028	0.35	-0.1
1,029,599	-		GFF1028	0.35	+1.3
1,029,606	+		GFF1028	0.36	-1.1
1,029,611	+		GFF1028	0.36	+0.0
1,029,611	+		GFF1028	0.36	-0.1
1,029,611	+		GFF1028	0.36	-0.1
1,029,614	-		GFF1028	0.37	+0.0
1,029,616	+		GFF1028	0.37	-0.6
1,029,619	-		GFF1028	0.37	-0.3
1,029,619	-		GFF1028	0.37	+0.1
1,029,619	-		GFF1028	0.37	-0.7
1,029,619	-		GFF1028	0.37	+0.4
1,029,619	-		GFF1028	0.37	+1.6
1,029,619	-		GFF1028	0.37	+0.7
1,029,629	-		GFF1028	0.38	-0.1
1,029,629	-		GFF1028	0.38	-1.3
1,029,687	-		GFF1028	0.43	+0.5
1,029,699	+		GFF1028	0.44	+0.4
1,029,716	+		GFF1028	0.45	-1.9
1,029,723	+		GFF1028	0.46	-1.5
1,029,724	-		GFF1028	0.46	-0.6
1,029,724	-		GFF1028	0.46	+0.3
1,029,724	-		GFF1028	0.46	-2.3
1,029,724	-		GFF1028	0.46	+0.7
1,029,731	-		GFF1028	0.46	+1.3
1,029,741	-		GFF1028	0.47	-1.8
1,029,767	-		GFF1028	0.49	-0.6
1,029,780	-		GFF1028	0.50	+0.6
1,029,782	+		GFF1028	0.50	-0.3
1,029,790	-		GFF1028	0.51	+1.9
1,029,814	+		GFF1028	0.53	+0.6
1,029,833	-		GFF1028	0.55	-0.6
1,029,869	-		GFF1028	0.58	-0.3
1,029,882	+		GFF1028	0.59	-0.2
1,029,882	+		GFF1028	0.59	+0.5
1,029,891	+		GFF1028	0.59	+1.1
1,029,899	-		GFF1028	0.60	+0.3
1,029,915	-		GFF1028	0.61	+1.1
1,029,928	-		GFF1028	0.62	-0.3
1,029,953	-		GFF1028	0.65	-2.0
1,029,955	+		GFF1028	0.65	-0.7
1,029,992	+		GFF1028	0.68	-0.7
1,030,008	+		GFF1028	0.69	+0.1
1,030,015	-		GFF1028	0.70	+0.6
1,030,039	+		GFF1028	0.72	+0.3
1,030,050	+		GFF1028	0.73	+0.4
1,030,100	+		GFF1028	0.77	-2.3
1,030,108	-		GFF1028	0.77	-0.2
1,030,108	-		GFF1028	0.77	-0.3
1,030,110	-		GFF1028	0.77	+1.3
1,030,120	-		GFF1028	0.78	+0.9
1,030,125	+		GFF1028	0.79	+0.1
1,030,141	+		GFF1028	0.80	-0.2
1,030,181	+		GFF1028	0.83	-0.9
1,030,195	-		GFF1028	0.84	-1.4
1,030,205	+		GFF1028	0.85	-0.3
1,030,205	+		GFF1028	0.85	+0.5
1,030,205	+		GFF1028	0.85	-2.0
1,030,205	+		GFF1028	0.85	-0.7
1,030,205	+		GFF1028	0.85	-1.3
1,030,210	+		GFF1028	0.86	+0.7
1,030,213	-		GFF1028	0.86	-0.5
1,030,213	-		GFF1028	0.86	-0.0
1,030,213	-		GFF1028	0.86	-0.8
1,030,213	-		GFF1028	0.86	-1.4
1,030,218	-		GFF1028	0.86	-1.5
1,030,225	+		GFF1028	0.87	-0.0
1,030,225	+		GFF1028	0.87	-0.1
1,030,230	+		GFF1028	0.87	+0.8
1,030,230	+		GFF1028	0.87	+1.0
1,030,233	-		GFF1028	0.88	-1.6
1,030,233	-		GFF1028	0.88	+0.2
1,030,233	-		GFF1028	0.88	+0.5
1,030,238	-		GFF1028	0.88	+0.3
1,030,278	+				+0.6
1,030,278	+				+0.5
1,030,283	+				-1.0
1,030,283	+				-2.5
1,030,283	+				-0.5
1,030,283	+				-0.0
1,030,283	+				-0.8
1,030,283	+				+0.1
1,030,288	+				-0.4
1,030,291	-				+0.3
1,030,291	-				-1.4
1,030,291	-				-0.2
1,030,291	-				-1.8
1,030,296	-				-0.7
1,030,296	-				+0.7
1,030,296	-				-1.6
1,030,296	-				-1.6
1,030,296	-				-0.6
1,030,337	-				-0.6
1,030,343	+				-1.3
1,030,349	+				+1.0
1,030,378	-				-1.6
1,030,401	+				+0.7
1,030,401	+				+0.3
1,030,401	+				-1.1
1,030,409	-				+0.2
1,030,409	-				-0.5
1,030,420	+				-1.8
1,030,426	+				-0.4
1,030,451	-				-0.2
1,030,458	+				+0.9
1,030,458	+				-0.0
1,030,468	+				+0.6
1,030,492	+		GFF1029	0.12	-0.2
1,030,496	-		GFF1029	0.12	-0.6
1,030,500	-		GFF1029	0.13	+0.3
1,030,506	-		GFF1029	0.13	-1.0
1,030,512	+		GFF1029	0.14	+0.4
1,030,512	+		GFF1029	0.14	+0.0
1,030,522	+		GFF1029	0.15	-0.1
1,030,538	+		GFF1029	0.17	+1.4
1,030,574	-		GFF1029	0.20	+0.6
1,030,580	-		GFF1029	0.21	+1.8
1,030,601	+		GFF1029	0.23	+0.5
1,030,611	-		GFF1029	0.24	-0.9
1,030,614	+		GFF1029	0.25	+0.5
1,030,622	-		GFF1029	0.25	-0.6
1,030,622	-		GFF1029	0.25	-1.9
1,030,622	-		GFF1029	0.25	-0.3
1,030,622	-		GFF1029	0.25	-1.5
1,030,622	-		GFF1029	0.25	+0.6
1,030,624	-		GFF1029	0.26	-0.7
1,030,644	+		GFF1029	0.28	+1.0
1,030,649	-		GFF1029	0.28	-0.2
1,030,651	+		GFF1029	0.29	+0.4
1,030,651	+		GFF1029	0.29	+0.1
1,030,659	-		GFF1029	0.29	+0.5
1,030,659	-		GFF1029	0.29	+0.3
1,030,659	-		GFF1029	0.29	+0.2
1,030,660	-		GFF1029	0.30	+1.0
1,030,664	-		GFF1029	0.30	-0.1
1,030,673	-		GFF1029	0.31	+0.5
1,030,681	-		GFF1029	0.32	+0.7
1,030,698	+		GFF1029	0.34	-0.5
1,030,706	-		GFF1029	0.34	+0.5
1,030,706	-		GFF1029	0.34	-0.6
1,030,706	-		GFF1029	0.34	+0.6
1,030,708	+		GFF1029	0.35	+0.9
1,030,708	+		GFF1029	0.35	+0.1
1,030,708	+		GFF1029	0.35	+1.1
1,030,719	-		GFF1029	0.36	-1.6
1,030,731	+		GFF1029	0.37	-0.3
1,030,751	+		GFF1029	0.39	+1.0
1,030,759	-		GFF1029	0.40	+0.3
1,030,759	-		GFF1029	0.40	+0.7
1,030,814	+		GFF1029	0.46	+0.8
1,030,814	+		GFF1029	0.46	-1.7
1,030,814	+		GFF1029	0.46	-1.0
1,030,814	+		GFF1029	0.46	+0.5
1,030,814	+		GFF1029	0.46	+0.6
1,030,817	-		GFF1029	0.46	-0.4
1,030,822	-		GFF1029	0.47	-0.7
1,030,822	-		GFF1029	0.47	-2.1
1,030,822	-		GFF1029	0.47	-1.9
1,030,827	-		GFF1029	0.47	+0.1
1,030,827	-		GFF1029	0.47	-0.1
1,030,833	+		GFF1029	0.48	-1.4
1,030,835	+		GFF1029	0.48	-0.3
1,030,835	+		GFF1029	0.48	-0.3
1,030,835	+		GFF1029	0.48	+0.6
1,030,835	+		GFF1029	0.48	-1.1
1,030,835	+		GFF1029	0.48	-0.5
1,030,835	+		GFF1029	0.48	-0.7
1,030,835	+		GFF1029	0.48	-3.0
1,030,835	+		GFF1029	0.48	+0.1
1,030,841	-		GFF1029	0.49	-2.8
1,030,843	-		GFF1029	0.49	+0.6
1,030,843	-		GFF1029	0.49	-1.2
1,030,843	-		GFF1029	0.49	+0.2
1,030,843	-		GFF1029	0.49	+0.8
1,030,843	-		GFF1029	0.49	+1.2
1,030,843	-		GFF1029	0.49	-1.8
1,030,843	-		GFF1029	0.49	-1.6
1,030,843	-		GFF1029	0.49	-0.8
1,030,843	-		GFF1029	0.49	-0.1
1,030,843	-		GFF1029	0.49	-0.5
1,030,843	-		GFF1029	0.49	+0.3
1,030,871	+		GFF1029	0.52	-1.1
1,030,891	+		GFF1029	0.54	+0.3
1,030,899	-		GFF1029	0.55	-0.8
1,030,899	-		GFF1029	0.55	-0.7
1,030,995	-		GFF1029	0.65	-0.5
1,030,995	-		GFF1029	0.65	-0.4
1,030,995	-		GFF1029	0.65	-2.0
1,031,001	+		GFF1029	0.66	-0.5
1,031,001	+		GFF1029	0.66	-0.3
1,031,005	+		GFF1029	0.66	-2.8
1,031,009	-		GFF1029	0.67	-0.3
1,031,009	-		GFF1029	0.67	+1.0
1,031,009	-		GFF1029	0.67	-0.6
1,031,020	+		GFF1029	0.68	-0.0
1,031,020	+		GFF1029	0.68	+1.2
1,031,020	+		GFF1029	0.68	+0.5
1,031,021	+		GFF1029	0.68	-0.3
1,031,022	-		GFF1029	0.68	-0.4
1,031,028	-		GFF1029	0.69	-1.6
1,031,028	-		GFF1029	0.69	-0.2
1,031,028	-		GFF1029	0.69	-0.8
1,031,049	+		GFF1029	0.71	-1.2
1,031,049	-		GFF1029	0.71	+1.0
1,031,086	+		GFF1029	0.75	+1.1
1,031,106	-		GFF1029	0.77	+0.6
1,031,120	-		GFF1029	0.78	+0.1
1,031,126	-		GFF1029	0.79	-0.5
1,031,129	+		GFF1029	0.79	+0.2
1,031,129	+		GFF1029	0.79	-1.6
1,031,137	-		GFF1029	0.80	+1.0
1,031,137	-		GFF1029	0.80	+0.2
1,031,137	-		GFF1029	0.80	-0.7
1,031,146	+		GFF1029	0.81	+1.0
1,031,146	+		GFF1029	0.81	-0.4
1,031,154	-		GFF1029	0.82	-0.1
1,031,154	-		GFF1029	0.82	-1.5
1,031,154	-		GFF1029	0.82	-0.6
1,031,156	+		GFF1029	0.82	-0.9
1,031,159	-		GFF1029	0.82	-0.9
1,031,164	-		GFF1029	0.83	-1.7
1,031,164	-		GFF1029	0.83	-0.2
1,031,169	-		GFF1029	0.84	+0.1
1,031,199	-		GFF1029	0.87	-0.1
1,031,245	+				-0.4
1,031,254	-				-0.6
1,031,254	-				+1.0
1,031,270	+				+1.5
1,031,272	+				-0.9
1,031,277	+				+0.2
1,031,277	+				+0.9
1,031,285	-				-1.4
1,031,285	-				-0.0
1,031,285	-				-0.7
1,031,285	-				+0.7
1,031,303	+				-0.1
1,031,326	-				+0.8
1,031,332	-				+0.4
1,031,349	-				+0.4
1,031,371	-				-1.5
1,031,399	+				+0.5
1,031,425	+		GFF1030	0.10	-0.7
1,031,428	-		GFF1030	0.10	+0.2
1,031,433	-		GFF1030	0.11	+0.9
1,031,435	-		GFF1030	0.11	+0.0
1,031,445	-		GFF1030	0.12	+0.7
1,031,460	+		GFF1030	0.13	+0.9
1,031,487	+		GFF1030	0.14	-0.9
1,031,516	+		GFF1030	0.16	-1.9
1,031,560	-		GFF1030	0.19	-0.5
1,031,565	+		GFF1030	0.20	-0.9
1,031,573	-		GFF1030	0.20	-1.2
1,031,597	+		GFF1030	0.22	+0.1
1,031,599	+		GFF1030	0.22	-1.0
1,031,609	+		GFF1030	0.23	-0.5
1,031,617	-		GFF1030	0.23	-0.4
1,031,618	+		GFF1030	0.23	-1.4
1,031,619	+		GFF1030	0.24	-0.1
1,031,623	+		GFF1030	0.24	+0.6
1,031,627	-		GFF1030	0.24	-0.0
1,031,627	-		GFF1030	0.24	-0.2
1,031,627	-		GFF1030	0.24	-0.5
1,031,631	-		GFF1030	0.24	+0.2
1,031,636	+		GFF1030	0.25	-0.7
1,031,636	+		GFF1030	0.25	+0.5
1,031,639	-		GFF1030	0.25	+0.6
1,031,644	-		GFF1030	0.25	+0.5
1,031,644	-		GFF1030	0.25	+0.0
1,031,672	+		GFF1030	0.27	+0.5
1,031,676	-		GFF1030	0.28	+0.4
1,031,678	+		GFF1030	0.28	-0.1
1,031,678	+		GFF1030	0.28	+0.5
1,031,681	-		GFF1030	0.28	-0.8
1,031,687	-		GFF1030	0.28	-0.6
1,031,695	+		GFF1030	0.29	+1.6
1,031,698	-		GFF1030	0.29	-1.2
1,031,742	+		GFF1030	0.32	-1.7
1,031,750	-		GFF1030	0.33	-0.5
1,031,760	-		GFF1030	0.33	+0.3
1,031,769	+		GFF1030	0.34	-1.8
1,031,777	-		GFF1030	0.35	+0.8
1,031,777	-		GFF1030	0.35	-0.4
1,031,777	-		GFF1030	0.35	+0.5
1,031,782	+		GFF1030	0.35	-1.3
1,031,796	-		GFF1030	0.36	-0.1
1,031,804	+		GFF1030	0.36	+1.2
1,031,809	+		GFF1030	0.37	-0.1
1,031,809	+		GFF1030	0.37	+0.6
1,031,809	+		GFF1030	0.37	-0.2
1,031,809	+		GFF1030	0.37	-0.8
1,031,812	-		GFF1030	0.37	-0.9
1,031,815	+		GFF1030	0.37	+0.2
1,031,817	-		GFF1030	0.37	-0.1
1,031,819	+		GFF1030	0.37	+0.6
1,031,867	+		GFF1030	0.41	+1.0
1,031,867	+		GFF1030	0.41	-0.8
1,031,875	-		GFF1030	0.41	+0.3
1,031,877	+		GFF1030	0.41	+0.2
1,031,887	-		GFF1030	0.42	-0.6
1,031,888	-		GFF1030	0.42	+1.3
1,031,896	+		GFF1030	0.43	+0.0
1,031,917	+		GFF1030	0.44	-0.0
1,031,917	+		GFF1030	0.44	+0.3
1,031,922	+		GFF1030	0.45	+0.2
1,031,925	-		GFF1030	0.45	-1.2
1,031,925	-		GFF1030	0.45	+0.3
1,031,927	+		GFF1030	0.45	+1.5
1,031,935	-		GFF1030	0.45	+0.4
1,031,935	-		GFF1030	0.45	-0.0
1,031,935	-		GFF1030	0.45	-1.0
1,031,935	-		GFF1030	0.45	+0.4
1,031,935	-		GFF1030	0.45	+0.9
1,031,935	-		GFF1030	0.45	-0.4
1,031,935	-		GFF1030	0.45	-0.1
1,031,935	-		GFF1030	0.45	-1.1
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