Strain Fitness in Sphingobium sp. HT1-2 around GFF1008

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,008,417	+		GFF1007	0.19	-1.4
1,008,419	+		GFF1007	0.20	-0.5
1,008,419	+		GFF1007	0.20	-0.2
1,008,419	+		GFF1007	0.20	+0.3
1,008,427	-		GFF1007	0.20	+1.5
1,008,427	-		GFF1007	0.20	-0.3
1,008,455	-		GFF1007	0.23	-0.0
1,008,473	-		GFF1007	0.24	-0.5
1,008,490	+		GFF1007	0.26	-2.5
1,008,490	+		GFF1007	0.26	-0.6
1,008,491	-		GFF1007	0.26	+0.4
1,008,498	-		GFF1007	0.26	-1.3
1,008,500	+		GFF1007	0.26	-0.2
1,008,506	+		GFF1007	0.27	+0.4
1,008,506	+		GFF1007	0.27	-0.8
1,008,506	+		GFF1007	0.27	+1.0
1,008,507	+		GFF1007	0.27	-1.2
1,008,508	+		GFF1007	0.27	-2.0
1,008,508	-		GFF1007	0.27	-1.8
1,008,508	-		GFF1007	0.27	+1.6
1,008,514	-		GFF1007	0.28	+1.0
1,008,514	-		GFF1007	0.28	-2.0
1,008,515	-		GFF1007	0.28	-1.5
1,008,516	+		GFF1007	0.28	-0.4
1,008,529	+		GFF1007	0.29	-0.1
1,008,537	-		GFF1007	0.29	-0.8
1,008,547	+		GFF1007	0.30	+0.7
1,008,550	+		GFF1007	0.31	+0.3
1,008,554	-		GFF1007	0.31	-0.1
1,008,555	-		GFF1007	0.31	-2.5
1,008,622	-		GFF1007	0.37	-1.8
1,008,622	-		GFF1007	0.37	-0.6
1,008,622	-		GFF1007	0.37	-1.4
1,008,629	+		GFF1007	0.37	-2.3
1,008,632	-		GFF1007	0.37	-2.0
1,008,632	-		GFF1007	0.37	-0.4
1,008,655	-		GFF1007	0.39	+0.1
1,008,656	-		GFF1007	0.39	+0.1
1,008,666	+		GFF1007	0.40	-2.1
1,008,666	+		GFF1007	0.40	+1.0
1,008,674	-		GFF1007	0.41	-0.4
1,008,684	+		GFF1007	0.42	-1.4
1,008,702	-		GFF1007	0.43	-2.1
1,008,702	-		GFF1007	0.43	-2.1
1,008,707	-		GFF1007	0.44	+0.5
1,008,746	-		GFF1007	0.47	+0.5
1,008,760	-		GFF1007	0.48	-0.6
1,008,788	+		GFF1007	0.51	+0.2
1,008,811	-		GFF1007	0.52	-0.7
1,008,811	-		GFF1007	0.52	+0.5
1,008,824	+		GFF1007	0.54	-1.6
1,008,825	-		GFF1007	0.54	+0.4
1,008,829	+		GFF1007	0.54	+0.8
1,008,829	+		GFF1007	0.54	-1.6
1,008,829	+		GFF1007	0.54	+1.7
1,008,829	+		GFF1007	0.54	+1.2
1,008,829	+		GFF1007	0.54	+0.1
1,008,829	+		GFF1007	0.54	-0.1
1,008,829	+		GFF1007	0.54	+0.8
1,008,832	-		GFF1007	0.54	-0.4
1,008,832	-		GFF1007	0.54	-0.9
1,008,837	-		GFF1007	0.55	-0.7
1,008,864	+		GFF1007	0.57	-0.3
1,008,874	+		GFF1007	0.58	-0.3
1,008,891	+		GFF1007	0.59	+0.7
1,008,891	+		GFF1007	0.59	-0.0
1,008,899	-		GFF1007	0.60	+0.1
1,008,899	-		GFF1007	0.60	+1.6
1,008,899	-		GFF1007	0.60	-0.4
1,008,899	-		GFF1007	0.60	+1.0
1,008,909	+		GFF1007	0.61	-0.2
1,008,929	+		GFF1007	0.62	-0.2
1,008,931	+		GFF1007	0.63	+0.6
1,008,931	+		GFF1007	0.63	-0.9
1,008,931	+		GFF1007	0.63	+0.7
1,008,931	+		GFF1007	0.63	+0.5
1,008,931	+		GFF1007	0.63	+0.4
1,008,931	+		GFF1007	0.63	+1.4
1,008,934	+		GFF1007	0.63	+0.2
1,008,939	-		GFF1007	0.63	+1.2
1,008,942	-		GFF1007	0.63	-0.3
1,008,950	+		GFF1007	0.64	+0.4
1,008,955	+		GFF1007	0.65	+0.8
1,008,966	-		GFF1007	0.65	-1.3
1,008,979	+		GFF1007	0.67	+0.1
1,008,995	-		GFF1007	0.68	+0.3
1,008,997	-		GFF1007	0.68	-0.6
1,009,006	+		GFF1007	0.69	-1.8
1,009,006	+		GFF1007	0.69	+0.1
1,009,013	-		GFF1007	0.69	+0.8
1,009,016	+		GFF1007	0.70	-0.1
1,009,019	+		GFF1007	0.70	-0.1
1,009,019	+		GFF1007	0.70	-0.6
1,009,019	+		GFF1007	0.70	-1.7
1,009,019	+		GFF1007	0.70	+1.0
1,009,067	+		GFF1007	0.74	+2.2
1,009,072	+		GFF1007	0.74	+0.3
1,009,078	+		GFF1007	0.75	-0.3
1,009,142	+		GFF1007	0.80	+0.1
1,009,142	+		GFF1007	0.80	-0.6
1,009,150	-		GFF1007	0.81	+0.5
1,009,155	+		GFF1007	0.81	+0.5
1,009,155	+		GFF1007	0.81	-1.3
1,009,155	+		GFF1007	0.81	+0.5
1,009,155	+		GFF1007	0.81	+1.1
1,009,155	+		GFF1007	0.81	+0.4
1,009,155	+		GFF1007	0.81	+1.0
1,009,155	+		GFF1007	0.81	-0.4
1,009,155	+		GFF1007	0.81	-1.0
1,009,155	+		GFF1007	0.81	+0.6
1,009,155	+		GFF1007	0.81	-0.7
1,009,155	+		GFF1007	0.81	-0.8
1,009,155	+		GFF1007	0.81	+0.7
1,009,156	-		GFF1007	0.81	+0.5
1,009,156	-		GFF1007	0.81	+0.2
1,009,158	-		GFF1007	0.82	-0.2
1,009,162	+		GFF1007	0.82	-0.0
1,009,163	-		GFF1007	0.82	-0.9
1,009,163	-		GFF1007	0.82	+0.2
1,009,163	-		GFF1007	0.82	+1.0
1,009,163	-		GFF1007	0.82	+0.1
1,009,163	-		GFF1007	0.82	+0.2
1,009,163	-		GFF1007	0.82	+1.2
1,009,163	-		GFF1007	0.82	-2.1
1,009,170	-		GFF1007	0.83	-1.4
1,009,172	+		GFF1007	0.83	-1.1
1,009,174	+		GFF1007	0.83	-1.3
1,009,174	+		GFF1007	0.83	+0.7
1,009,174	+		GFF1007	0.83	+0.6
1,009,182	-		GFF1007	0.84	-1.5
1,009,200	+		GFF1007	0.85	-0.9
1,009,208	-		GFF1007	0.86	-0.3
1,009,221	-		GFF1007	0.87	-0.6
1,009,234	+		GFF1007	0.88	-0.7
1,009,244	+		GFF1007	0.89	+0.5
1,009,250	+		GFF1007	0.89	+0.5
1,009,252	-		GFF1007	0.90	-0.8
1,009,252	-		GFF1007	0.90	+0.1
1,009,252	-		GFF1007	0.90	-0.6
1,009,252	-		GFF1007	0.90	-0.1
1,009,252	-		GFF1007	0.90	-0.3
1,009,252	-		GFF1007	0.90	-1.8
1,009,252	-		GFF1007	0.90	-0.7
1,009,273	-				-0.1
1,009,284	+				-0.6
1,009,284	+				-1.5
1,009,289	+				+0.3
1,009,292	-				-0.8
1,009,296	-				+0.7
1,009,297	-				+0.1
1,009,304	-				-0.7
1,009,313	+				-0.2
1,009,323	+				-1.2
1,009,323	+				-0.4
1,009,331	-				+0.5
1,009,350	+				+0.5
1,009,357	+				-1.3
1,009,357	+				+0.7
1,009,357	+				-0.8
1,009,357	+				-0.8
1,009,357	+				-1.3
1,009,357	+				-1.0
1,009,365	-				-1.1
1,009,365	-				-0.2
1,009,367	+				+0.0
1,009,367	+				-1.3
1,009,367	+				+0.5
1,009,375	-				-1.8
1,009,375	-				+0.1
1,009,390	+				+0.3
1,009,390	+				-2.3
1,009,398	-				-1.6
1,009,398	-				-0.6
1,009,430	+				-0.4
1,009,448	+				+0.3
1,009,456	-				-1.2
1,009,456	-				-0.9
1,009,456	-				-1.6
1,009,487	-		GFF1008	0.12	-2.1
1,009,494	-		GFF1008	0.13	+2.0
1,009,505	+		GFF1008	0.14	+0.3
1,009,510	+		GFF1008	0.14	+0.1
1,009,510	+		GFF1008	0.14	+0.2
1,009,510	+		GFF1008	0.14	-0.0
1,009,510	+		GFF1008	0.14	+0.3
1,009,518	-		GFF1008	0.15	-0.2
1,009,518	-		GFF1008	0.15	+0.4
1,009,518	-		GFF1008	0.15	-1.1
1,009,518	-		GFF1008	0.15	-0.2
1,009,518	-		GFF1008	0.15	-0.2
1,009,540	-		GFF1008	0.17	-0.6
1,009,545	-		GFF1008	0.18	-0.4
1,009,557	-		GFF1008	0.19	+0.2
1,009,562	+		GFF1008	0.20	+1.9
1,009,564	-		GFF1008	0.20	-1.1
1,009,566	+		GFF1008	0.20	-0.9
1,009,568	+		GFF1008	0.20	+0.6
1,009,576	-		GFF1008	0.21	-0.4
1,009,582	+		GFF1008	0.22	-2.5
1,009,595	-		GFF1008	0.23	-0.9
1,009,597	+		GFF1008	0.23	-1.4
1,009,597	+		GFF1008	0.23	-0.1
1,009,605	-		GFF1008	0.24	+0.8
1,009,605	-		GFF1008	0.24	-1.5
1,009,605	-		GFF1008	0.24	-1.3
1,009,648	-		GFF1008	0.28	-0.3
1,009,648	-		GFF1008	0.28	-0.0
1,009,689	+		GFF1008	0.33	+1.4
1,009,690	-		GFF1008	0.33	+0.9
1,009,697	+		GFF1008	0.34	+0.0
1,009,704	+		GFF1008	0.34	-1.5
1,009,713	+		GFF1008	0.35	-1.2
1,009,746	+		GFF1008	0.39	+0.5
1,009,754	-		GFF1008	0.39	+0.6
1,009,769	+		GFF1008	0.41	-0.7
1,009,777	-		GFF1008	0.42	-1.2
1,009,779	+		GFF1008	0.42	-0.4
1,009,779	+		GFF1008	0.42	-0.9
1,009,786	+		GFF1008	0.43	-1.0
1,009,786	+		GFF1008	0.43	+0.6
1,009,787	-		GFF1008	0.43	+0.1
1,009,787	-		GFF1008	0.43	-1.6
1,009,787	-		GFF1008	0.43	+0.6
1,009,787	-		GFF1008	0.43	-1.4
1,009,787	-		GFF1008	0.43	-0.7
1,009,787	-		GFF1008	0.43	-0.0
1,009,787	-		GFF1008	0.43	+0.5
1,009,787	-		GFF1008	0.43	-0.6
1,009,792	-		GFF1008	0.43	+1.5
1,009,793	+		GFF1008	0.43	+0.7
1,009,793	+		GFF1008	0.43	+0.0
1,009,795	-		GFF1008	0.44	-1.3
1,009,801	-		GFF1008	0.44	-1.6
1,009,801	-		GFF1008	0.44	+0.5
1,009,811	-		GFF1008	0.45	-1.6
1,009,824	+		GFF1008	0.47	-0.0
1,009,824	+		GFF1008	0.47	-2.2
1,009,850	+		GFF1008	0.49	+0.9
1,009,850	+		GFF1008	0.49	-1.2
1,009,850	+		GFF1008	0.49	-1.0
1,009,850	+		GFF1008	0.49	+0.8
1,009,858	-		GFF1008	0.50	-0.2
1,009,858	-		GFF1008	0.50	-0.6
1,009,858	-		GFF1008	0.50	-0.8
1,009,885	+		GFF1008	0.53	-1.5
1,009,891	-		GFF1008	0.54	+0.3
1,009,920	-		GFF1008	0.57	-0.2
1,009,920	-		GFF1008	0.57	-0.8
1,009,922	+		GFF1008	0.57	-2.3
1,009,928	-		GFF1008	0.57	+0.1
1,009,929	+		GFF1008	0.58	-0.5
1,009,930	-		GFF1008	0.58	-1.6
1,009,930	-		GFF1008	0.58	-0.6
1,009,930	-		GFF1008	0.58	-0.6
1,009,930	-		GFF1008	0.58	-1.0
1,009,935	+		GFF1008	0.58	+0.4
1,009,943	-		GFF1008	0.59	+0.7
1,009,943	-		GFF1008	0.59	+0.5
1,009,952	+		GFF1008	0.60	-1.8
1,009,959	-		GFF1008	0.61	-1.6
1,009,960	-		GFF1008	0.61	-1.6
1,009,960	-		GFF1008	0.61	+0.1
1,009,960	-		GFF1008	0.61	-0.1
1,009,960	-		GFF1008	0.61	-0.0
1,009,960	-		GFF1008	0.61	-0.2
1,009,974	-		GFF1008	0.62	+0.5
1,009,986	+		GFF1008	0.63	-1.6
1,009,987	+		GFF1008	0.64	-0.5
1,010,009	+		GFF1008	0.66	-1.0
1,010,017	-		GFF1008	0.67	+1.1
1,010,023	+		GFF1008	0.67	+0.6
1,010,025	+		GFF1008	0.67	+0.8
1,010,033	-		GFF1008	0.68	-1.0
1,010,050	-		GFF1008	0.70	+0.4
1,010,069	+		GFF1008	0.72	-1.0
1,010,070	+		GFF1008	0.72	+0.4
1,010,075	+		GFF1008	0.73	+0.6
1,010,095	+		GFF1008	0.75	-0.8
1,010,097	+		GFF1008	0.75	+0.1
1,010,101	-		GFF1008	0.75	-0.6
1,010,103	-		GFF1008	0.76	+0.3
1,010,119	+		GFF1008	0.77	-0.9
1,010,127	-		GFF1008	0.78	-0.8
1,010,127	-		GFF1008	0.78	-0.4
1,010,163	+		GFF1008	0.82	+0.9
1,010,198	+		GFF1008	0.85	+0.7
1,010,213	+		GFF1008	0.87	+0.1
1,010,213	+		GFF1008	0.87	+0.2
1,010,213	+		GFF1008	0.87	-2.1
1,010,213	+		GFF1008	0.87	+0.6
1,010,221	-		GFF1008	0.88	+0.3
1,010,224	+		GFF1008	0.88	-0.3
1,010,224	+		GFF1008	0.88	-0.2
1,010,224	+		GFF1008	0.88	-0.3
1,010,224	+		GFF1008	0.88	-0.5
1,010,227	-		GFF1008	0.88	+0.7
1,010,232	-		GFF1008	0.89	+1.0
1,010,232	-		GFF1008	0.89	-1.1
1,010,232	-		GFF1008	0.89	+0.9
1,010,232	-		GFF1008	0.89	-1.4
1,010,232	-		GFF1008	0.89	+0.1
1,010,252	+				-2.4
1,010,252	+				-1.1
1,010,252	+				-1.4
1,010,252	+				-0.5
1,010,260	-				-0.3
1,010,260	-				-0.0
1,010,260	-				+1.7
1,010,260	-				-0.5
1,010,260	-				-1.9
1,010,260	-				-1.3
1,010,298	-				+0.3
1,010,328	-				+0.0
1,010,332	+				+0.6
1,010,332	+				+1.2
1,010,332	+				+0.8
1,010,340	-				-0.9
1,010,340	-				+1.0
1,010,340	-				-1.2
1,010,340	-				-1.7
1,010,340	-				+1.2
1,010,366	-				-0.8
1,010,385	+				+0.6
1,010,410	-				-0.3
1,010,416	+				-0.1
1,010,435	-				-0.5
1,010,435	-				+1.5
1,010,435	-				-1.1
1,010,437	+				+0.3
1,010,445	-				-1.3
1,010,484	+				-1.3
1,010,484	+				+0.5
1,010,484	+				-0.6
1,010,484	+				+0.1
1,010,484	+				-0.1
1,010,489	+				+0.3
1,010,489	+				-0.0
1,010,492	-		GFF1009	0.10	-1.8
1,010,492	-		GFF1009	0.10	+1.4
1,010,492	-		GFF1009	0.10	+0.2
1,010,497	-		GFF1009	0.11	-0.3
1,010,497	-		GFF1009	0.11	+0.7
1,010,500	+		GFF1009	0.11	-0.6
1,010,502	-		GFF1009	0.11	+1.0
1,010,520	-		GFF1009	0.13	-0.2
1,010,532	+		GFF1009	0.14	-1.4
1,010,532	+		GFF1009	0.14	-0.9
1,010,540	-		GFF1009	0.15	-0.7
1,010,540	-		GFF1009	0.15	-1.1
1,010,540	-		GFF1009	0.15	+1.1
1,010,568	+		GFF1009	0.17	+0.4
1,010,568	+		GFF1009	0.17	-0.7
1,010,568	+		GFF1009	0.17	+0.7
1,010,568	+		GFF1009	0.17	+1.4
1,010,570	+		GFF1009	0.18	+0.7
1,010,573	+		GFF1009	0.18	-0.5
1,010,576	-		GFF1009	0.18	-0.6
1,010,578	+		GFF1009	0.18	+1.0
1,010,578	-		GFF1009	0.18	-1.6
1,010,578	-		GFF1009	0.18	-2.0
1,010,581	-		GFF1009	0.19	-0.2
1,010,601	+		GFF1009	0.21	-0.3
1,010,627	-		GFF1009	0.23	-0.3
1,010,629	+		GFF1009	0.23	+0.3
1,010,629	+		GFF1009	0.23	+0.7
1,010,637	-		GFF1009	0.24	+0.4
1,010,714	-		GFF1009	0.31	+0.5
1,010,731	-		GFF1009	0.33	-1.6
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