Strain Fitness in Sphingobium sp. HT1-2 around GFF89

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
77,252	+		GFF88	0.17	-0.2
77,259	+		GFF88	0.17	-0.3
77,267	-		GFF88	0.18	+0.9
77,297	+		GFF88	0.21	+0.7
77,297	+		GFF88	0.21	+0.7
77,305	-		GFF88	0.22	+1.8
77,306	-		GFF88	0.22	-0.8
77,318	+		GFF88	0.23	-0.2
77,318	+		GFF88	0.23	-1.5
77,326	-		GFF88	0.24	-1.0
77,362	+		GFF88	0.27	-0.3
77,386	-		GFF88	0.29	-2.2
77,529	+		GFF88	0.43	+0.4
77,529	+		GFF88	0.43	-0.7
77,529	+		GFF88	0.43	+1.2
77,529	+		GFF88	0.43	-0.1
77,529	+		GFF88	0.43	-0.9
77,529	+		GFF88	0.43	-1.6
77,529	+		GFF88	0.43	+1.5
77,529	+		GFF88	0.43	-0.1
77,529	+		GFF88	0.43	-0.5
77,529	+		GFF88	0.43	-0.4
77,537	-		GFF88	0.43	-1.6
77,537	-		GFF88	0.43	-0.7
77,537	-		GFF88	0.43	-1.4
77,537	-		GFF88	0.43	-0.6
77,537	-		GFF88	0.43	+0.9
77,537	-		GFF88	0.43	-1.3
77,547	+		GFF88	0.44	+0.0
77,607	-		GFF88	0.50	-0.6
77,616	+		GFF88	0.51	-0.4
77,616	+		GFF88	0.51	+0.3
77,616	+		GFF88	0.51	-1.8
77,631	+		GFF88	0.52	+0.7
77,708	+		GFF88	0.59	-0.9
77,708	+		GFF88	0.59	+0.3
77,716	-		GFF88	0.60	+0.2
77,738	-		GFF88	0.62	-1.9
77,763	+		GFF88	0.65	-0.2
77,771	+		GFF88	0.65	-1.0
77,776	-		GFF88	0.66	+1.1
77,793	-		GFF88	0.67	-0.4
77,797	+		GFF88	0.68	+0.4
77,800	+		GFF88	0.68	-0.2
77,805	-		GFF88	0.68	-0.1
77,862	+		GFF88	0.74	+0.1
77,862	+		GFF88	0.74	-1.8
77,862	+		GFF88	0.74	-0.8
77,862	+		GFF88	0.74	+0.3
77,870	-		GFF88	0.75	-0.5
77,870	-		GFF88	0.75	-1.5
77,871	-		GFF88	0.75	+0.0
77,899	-		GFF88	0.77	-0.4
77,901	-		GFF88	0.77	-1.7
77,905	+		GFF88	0.78	-0.1
77,913	-		GFF88	0.79	-1.8
77,937	+		GFF88	0.81	-0.1
77,981	-		GFF88	0.85	+0.7
77,981	-		GFF88	0.85	-0.5
77,990	-		GFF88	0.86	-0.7
78,024	-		GFF88	0.89	-1.8
78,047	+				-1.5
78,047	-				+0.3
78,047	-				-1.4
78,084	+				+0.2
78,084	+				+0.5
78,092	-				-1.0
78,106	+				+0.7
78,111	+				+0.7
78,114	-				-1.3
78,114	-				-0.5
78,119	-				-1.3
78,191	+				-0.3
78,191	+				-0.2
78,204	-				+0.3
78,213	-				-2.0
78,213	-				+0.4
78,213	-				-0.4
78,223	+				-0.1
78,248	-				-2.1
78,248	-				+0.4
78,251	+				-1.3
78,259	-				-1.3
78,290	+		GFF89	0.12	+1.3
78,298	+		GFF89	0.14	-0.0
78,311	+		GFF89	0.16	-0.0
78,311	+		GFF89	0.16	+0.4
78,316	+		GFF89	0.17	+0.2
78,319	-		GFF89	0.18	-0.7
78,319	-		GFF89	0.18	+0.5
78,319	-		GFF89	0.18	-1.7
78,329	-		GFF89	0.20	-2.1
78,331	+		GFF89	0.20	-0.0
78,351	-		GFF89	0.24	+0.4
78,365	+		GFF89	0.27	+1.4
78,365	+		GFF89	0.27	+0.0
78,373	-		GFF89	0.28	+0.4
78,373	-		GFF89	0.28	-0.3
78,374	-		GFF89	0.29	+0.5
78,388	+		GFF89	0.31	-1.6
78,418	-		GFF89	0.37	-1.3
78,469	+		GFF89	0.47	-0.1
78,546	+		GFF89	0.62	-2.3
78,546	+		GFF89	0.62	-0.1
78,554	-		GFF89	0.64	+0.1
78,554	-		GFF89	0.64	-0.3
78,556	+		GFF89	0.64	-1.4
78,556	+		GFF89	0.64	-0.2
78,577	-		GFF89	0.68	+0.3
78,589	+		GFF89	0.71	-0.0
78,597	+		GFF89	0.72	-0.3
78,602	+		GFF89	0.73	-0.0
78,609	+		GFF89	0.74	+0.7
78,609	+		GFF89	0.74	-0.8
78,609	+		GFF89	0.74	-0.4
78,610	-		GFF89	0.75	+0.1
78,616	+		GFF89	0.76	+1.4
78,616	+		GFF89	0.76	-0.8
78,616	+		GFF89	0.76	+0.6
78,624	-		GFF89	0.77	-2.2
78,633	+		GFF89	0.79	-0.6
78,633	+		GFF89	0.79	-0.5
78,641	-		GFF89	0.81	-0.2
78,667	-		GFF89	0.86	-0.0
78,669	+		GFF89	0.86	+0.2
78,685	-		GFF89	0.89	-0.9
78,685	-		GFF89	0.89	-1.4
78,717	-				-1.5
78,734	+				+0.5
78,742	-				-0.5
78,749	-				+0.7
78,753	-				-0.0
78,753	-				-2.8
78,755	+				-0.3
78,839	+				-0.1
78,955	-		GFF90	0.12	-1.2
78,978	+		GFF90	0.17	-1.0
78,979	-		GFF90	0.17	-1.2
78,979	-		GFF90	0.17	-1.1
78,998	-		GFF90	0.20	-0.2
79,012	-		GFF90	0.23	+0.3
79,015	+		GFF90	0.24	+1.2
79,016	+		GFF90	0.24	+0.4
79,016	+		GFF90	0.24	-1.0
79,023	-		GFF90	0.25	+1.0
79,038	-		GFF90	0.28	-0.2
79,078	+		GFF90	0.36	+0.2
79,078	+		GFF90	0.36	+0.2
79,086	-		GFF90	0.37	+0.1
79,086	-		GFF90	0.37	-1.0
79,091	-		GFF90	0.38	-0.3
79,094	+		GFF90	0.39	-1.5
79,105	-		GFF90	0.41	+0.1
79,127	+		GFF90	0.45	+0.5
79,127	+		GFF90	0.45	-3.6
79,127	+		GFF90	0.45	-0.3
79,127	+		GFF90	0.45	-3.0
79,130	-		GFF90	0.45	-2.7
79,134	+		GFF90	0.46	-1.0
79,135	-		GFF90	0.46	+0.5
79,135	-		GFF90	0.46	+0.1
79,139	+		GFF90	0.47	-1.3
79,147	-		GFF90	0.49	+1.0
79,168	-		GFF90	0.53	-1.3
79,168	-		GFF90	0.53	-0.4
79,178	+		GFF90	0.55	+0.8
79,191	-		GFF90	0.57	-0.6
79,196	-		GFF90	0.58	+1.6
79,221	+		GFF90	0.63	+0.6
79,226	+		GFF90	0.64	-0.6
79,234	-		GFF90	0.65	-0.2
79,281	+		GFF90	0.74	-1.0
79,285	+		GFF90	0.75	-0.1
79,285	+		GFF90	0.75	+1.1
79,286	+		GFF90	0.75	+0.0
79,286	+		GFF90	0.75	-0.4
79,286	+		GFF90	0.75	+0.1
79,286	+		GFF90	0.75	-1.8
79,286	+		GFF90	0.75	+0.2
79,286	+		GFF90	0.75	-0.2
79,286	+		GFF90	0.75	+0.0
79,289	-		GFF90	0.76	-0.0
79,293	-		GFF90	0.76	+0.2
79,294	-		GFF90	0.77	+0.4
79,294	-		GFF90	0.77	-1.9
79,294	-		GFF90	0.77	-0.9
79,294	-		GFF90	0.77	+0.2
79,294	-		GFF90	0.77	+1.8
79,294	-		GFF90	0.77	+1.2
79,294	-		GFF90	0.77	+0.7
79,312	+		GFF90	0.80	+1.2
79,341	+		GFF90	0.85	-0.8
79,345	+		GFF90	0.86	-1.6
79,345	+		GFF90	0.86	+0.3
79,345	+		GFF90	0.86	-0.8
79,345	+		GFF90	0.86	+1.4
79,353	-		GFF90	0.88	+0.0
79,353	-		GFF90	0.88	-0.0
79,353	-		GFF90	0.88	-0.4
79,353	-		GFF90	0.88	+0.4
79,353	-		GFF90	0.88	-0.2
79,353	-		GFF90	0.88	-0.1
79,353	-		GFF90	0.88	-1.4
79,355	-		GFF90	0.88	-0.4
79,364	+		GFF90	0.90	-2.5
79,369	+				+0.2
79,372	-				+0.4
79,372	-				-0.6
79,386	+				-0.4
79,394	+				-0.6
79,394	+				-0.6
79,395	+				-0.3
79,403	-				-2.2
79,403	-				-0.3
79,403	-				+0.9
79,410	+				-0.3
79,414	+				-0.4
79,418	-				+0.4
79,419	+				+1.0
79,427	-				-0.7
79,427	-				-1.5
79,429	+				+0.5
79,432	+				-0.7
79,447	+				+0.1
79,449	+				+0.7
79,462	-				-0.4
79,462	-				+1.0
79,481	-				-0.4
79,492	+				+1.5
79,498	+				-1.8
79,500	-				-0.2
79,505	+				-1.1
79,510	+				-0.3
79,513	-				-1.0
79,513	-				-0.2
79,515	+				-1.2
79,523	-				+0.5
79,523	-				+0.8
79,538	+				+0.1
79,538	+				+0.3
79,538	+				-0.8
79,546	-				+0.3
79,546	-				+0.5
79,554	+				+1.0
79,560	+				-0.3
79,571	-				+0.2
79,574	-				+0.2
79,588	+				-0.6
79,613	-		GFF91	0.11	+0.2
79,628	+		GFF91	0.12	-1.4
79,636	-		GFF91	0.12	-1.4
79,646	+		GFF91	0.13	-0.5
79,646	+		GFF91	0.13	-0.0
79,651	+		GFF91	0.13	+0.7
79,654	-		GFF91	0.13	+1.1
79,654	-		GFF91	0.13	-0.4
79,654	-		GFF91	0.13	-0.3
79,654	-		GFF91	0.13	+0.3
79,654	-		GFF91	0.13	+0.5
79,654	-		GFF91	0.13	-0.2
79,659	-		GFF91	0.14	-0.5
79,659	-		GFF91	0.14	+0.2
79,659	-		GFF91	0.14	-0.0
79,666	+		GFF91	0.14	+0.5
79,689	+		GFF91	0.15	+1.6
79,702	-		GFF91	0.16	+0.7
79,702	-		GFF91	0.16	+0.4
79,712	+		GFF91	0.16	-0.3
79,712	+		GFF91	0.16	+0.9
79,714	-		GFF91	0.17	+1.1
79,717	+		GFF91	0.17	-1.7
79,717	+		GFF91	0.17	-0.2
79,720	-		GFF91	0.17	-1.7
79,725	-		GFF91	0.17	+1.9
79,725	-		GFF91	0.17	-0.4