Strain Fitness in Sphingobium sp. HT1-2 around GFF534

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF532 and GFF533 are separated by 10 nucleotidesGFF533 and GFF534 are separated by 13 nucleotidesGFF534 and GFF535 overlap by 1 nucleotidesGFF535 and GFF536 are separated by 14 nucleotidesGFF536 and GFF537 are separated by 3 nucleotides GFF532 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 529,669 to 530,184 GFF532 GFF533 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 530,195 to 530,980 GFF533 GFF534 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 530,994 to 531,701 GFF534 GFF535 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 531,701 to 532,348 GFF535 GFF536 - Ferredoxin, 2Fe-2S, at 532,363 to 532,680 GFF536 GFF537 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 532,684 to 533,454 GFF537 Position (kb) 530 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.024 kb on - strand, within GFF532at 530.033 kb on + strand, within GFF532at 530.033 kb on + strand, within GFF532at 530.035 kb on - strand, within GFF532at 530.102 kb on - strand, within GFF532at 530.180 kb on + strandat 530.224 kb on + strandat 530.230 kb on + strandat 530.232 kb on - strandat 530.232 kb on - strandat 530.232 kb on - strandat 530.239 kb on - strandat 530.246 kb on + strandat 530.251 kb on + strandat 530.251 kb on + strandat 530.254 kb on - strandat 530.254 kb on - strandat 530.254 kb on - strandat 530.259 kb on - strandat 530.269 kb on + strandat 530.275 kb on - strand, within GFF533at 530.275 kb on - strand, within GFF533at 530.290 kb on - strand, within GFF533at 530.292 kb on + strand, within GFF533at 530.306 kb on - strand, within GFF533at 530.308 kb on + strand, within GFF533at 530.352 kb on - strand, within GFF533at 530.352 kb on - strand, within GFF533at 530.357 kb on + strand, within GFF533at 530.390 kb on + strand, within GFF533at 530.390 kb on + strand, within GFF533at 530.398 kb on - strand, within GFF533at 530.398 kb on - strand, within GFF533at 530.416 kb on + strand, within GFF533at 530.424 kb on - strand, within GFF533at 530.424 kb on - strand, within GFF533at 530.438 kb on + strand, within GFF533at 530.446 kb on - strand, within GFF533at 530.483 kb on + strand, within GFF533at 530.494 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.496 kb on + strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.504 kb on - strand, within GFF533at 530.511 kb on + strand, within GFF533at 530.516 kb on + strand, within GFF533at 530.516 kb on + strand, within GFF533at 530.524 kb on - strand, within GFF533at 530.550 kb on + strand, within GFF533at 530.558 kb on - strand, within GFF533at 530.558 kb on - strand, within GFF533at 530.560 kb on + strand, within GFF533at 530.571 kb on + strand, within GFF533at 530.589 kb on + strand, within GFF533at 530.597 kb on - strand, within GFF533at 530.607 kb on - strand, within GFF533at 530.622 kb on - strand, within GFF533at 530.626 kb on + strand, within GFF533at 530.641 kb on - strand, within GFF533at 530.656 kb on + strand, within GFF533at 530.658 kb on - strand, within GFF533at 530.674 kb on + strand, within GFF533at 530.674 kb on + strand, within GFF533at 530.683 kb on - strand, within GFF533at 530.687 kb on + strand, within GFF533at 530.695 kb on - strand, within GFF533at 530.715 kb on + strand, within GFF533at 530.722 kb on + strand, within GFF533at 530.758 kb on + strand, within GFF533at 530.760 kb on + strand, within GFF533at 530.763 kb on + strand, within GFF533at 530.766 kb on - strand, within GFF533at 530.768 kb on + strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.771 kb on - strand, within GFF533at 530.793 kb on - strand, within GFF533at 530.805 kb on + strand, within GFF533at 530.806 kb on - strand, within GFF533at 530.818 kb on + strand, within GFF533at 530.826 kb on - strand, within GFF533at 530.852 kb on + strand, within GFF533at 530.893 kb on + strand, within GFF533at 530.916 kb on + strandat 530.916 kb on + strandat 530.921 kb on + strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.924 kb on - strandat 530.943 kb on + strandat 530.943 kb on + strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.951 kb on - strandat 530.955 kb on - strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.991 kb on - strandat 531.033 kb on + strandat 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.070 kb on + strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.078 kb on - strand, within GFF534at 531.088 kb on + strand, within GFF534at 531.091 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.169 kb on + strand, within GFF534at 531.220 kb on + strand, within GFF534at 531.228 kb on - strand, within GFF534at 531.235 kb on + strand, within GFF534at 531.243 kb on - strand, within GFF534at 531.245 kb on + strand, within GFF534at 531.291 kb on - strand, within GFF534at 531.345 kb on + strand, within GFF534at 531.367 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.439 kb on + strand, within GFF534at 531.444 kb on + strand, within GFF534at 531.447 kb on - strand, within GFF534at 531.452 kb on - strand, within GFF534at 531.463 kb on - strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.497 kb on + strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.505 kb on - strand, within GFF534at 531.522 kb on - strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.545 kb on + strand, within GFF534at 531.550 kb on + strand, within GFF534at 531.553 kb on - strand, within GFF534at 531.554 kb on + strand, within GFF534at 531.581 kb on + strand, within GFF534at 531.584 kb on - strand, within GFF534at 531.587 kb on + strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.594 kb on - strand, within GFF534at 531.601 kb on - strand, within GFF534at 531.612 kb on + strand, within GFF534at 531.636 kb on + strandat 531.644 kb on - strandat 531.647 kb on - strandat 531.777 kb on - strand, within GFF535at 531.810 kb on - strand, within GFF535at 531.822 kb on + strand, within GFF535at 531.824 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.873 kb on - strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.887 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.888 kb on + strand, within GFF535at 531.896 kb on - strand, within GFF535at 531.898 kb on + strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.901 kb on - strand, within GFF535at 531.906 kb on - strand, within GFF535at 531.932 kb on - strand, within GFF535at 531.956 kb on + strand, within GFF535at 531.963 kb on + strand, within GFF535at 531.964 kb on - strand, within GFF535at 532.003 kb on + strand, within GFF535at 532.043 kb on + strand, within GFF535at 532.066 kb on + strand, within GFF535at 532.073 kb on + strand, within GFF535at 532.073 kb on + strand, within GFF535at 532.080 kb on - strand, within GFF535at 532.081 kb on - strand, within GFF535at 532.090 kb on + strand, within GFF535at 532.096 kb on + strand, within GFF535at 532.104 kb on - strand, within GFF535at 532.124 kb on + strand, within GFF535at 532.162 kb on - strand, within GFF535at 532.186 kb on - strand, within GFF535at 532.203 kb on - strand, within GFF535at 532.218 kb on - strand, within GFF535at 532.250 kb on - strand, within GFF535at 532.254 kb on - strand, within GFF535at 532.256 kb on + strand, within GFF535at 532.257 kb on + strand, within GFF535at 532.257 kb on + strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.265 kb on - strand, within GFF535at 532.279 kb on - strand, within GFF535at 532.363 kb on - strandat 532.373 kb on - strandat 532.378 kb on + strandat 532.378 kb on + strandat 532.428 kb on + strand, within GFF536at 532.431 kb on - strand, within GFF536at 532.442 kb on - strand, within GFF536at 532.442 kb on - strand, within GFF536at 532.464 kb on - strand, within GFF536at 532.465 kb on - strand, within GFF536at 532.479 kb on + strand, within GFF536at 532.527 kb on + strand, within GFF536at 532.527 kb on + strand, within GFF536at 532.535 kb on - strand, within GFF536at 532.535 kb on - strand, within GFF536at 532.573 kb on - strand, within GFF536at 532.609 kb on + strand, within GFF536at 532.609 kb on + strand, within GFF536at 532.617 kb on - strand, within GFF536at 532.623 kb on + strand, within GFF536at 532.651 kb on - strandat 532.656 kb on - strandat 532.674 kb on + strandat 532.674 kb on + strandat 532.682 kb on - strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.688 kb on + strandat 532.689 kb on - strandat 532.689 kb on - strandat 532.689 kb on - strandat 532.693 kb on + strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.696 kb on - strandat 532.698 kb on + strandat 532.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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530,024 - GFF532 0.69 -0.9
530,033 + GFF532 0.71 -0.5
530,033 + GFF532 0.71 -1.2
530,035 - GFF532 0.71 +1.4
530,102 - GFF532 0.84 -1.9
530,180 + +0.0
530,224 + +0.9
530,230 + +0.2
530,232 - -0.1
530,232 - -2.2
530,232 - -0.9
530,239 - +1.3
530,246 + -0.1
530,251 + +1.3
530,251 + -0.2
530,254 - -1.2
530,254 - +0.2
530,254 - +1.0
530,259 - +0.9
530,269 + -1.0
530,275 - GFF533 0.10 +1.1
530,275 - GFF533 0.10 -0.8
530,290 - GFF533 0.12 +0.0
530,292 + GFF533 0.12 -0.0
530,306 - GFF533 0.14 -1.0
530,308 + GFF533 0.14 -0.5
530,352 - GFF533 0.20 +0.1
530,352 - GFF533 0.20 +0.9
530,357 + GFF533 0.21 -1.4
530,390 + GFF533 0.25 +0.5
530,390 + GFF533 0.25 -0.1
530,398 - GFF533 0.26 +0.5
530,398 - GFF533 0.26 -0.9
530,416 + GFF533 0.28 +1.7
530,424 - GFF533 0.29 -1.0
530,424 - GFF533 0.29 +1.0
530,438 + GFF533 0.31 +0.1
530,446 - GFF533 0.32 +1.1
530,483 + GFF533 0.37 -1.1
530,494 + GFF533 0.38 +1.1
530,496 + GFF533 0.38 -0.1
530,496 + GFF533 0.38 -1.6
530,496 + GFF533 0.38 -0.6
530,504 - GFF533 0.39 +0.2
530,504 - GFF533 0.39 -0.7
530,504 - GFF533 0.39 -0.2
530,511 + GFF533 0.40 -0.9
530,516 + GFF533 0.41 +1.4
530,516 + GFF533 0.41 -0.2
530,524 - GFF533 0.42 -1.2
530,550 + GFF533 0.45 -0.5
530,558 - GFF533 0.46 +1.0
530,558 - GFF533 0.46 -0.3
530,560 + GFF533 0.46 +0.0
530,571 + GFF533 0.48 -0.2
530,589 + GFF533 0.50 -1.4
530,597 - GFF533 0.51 +1.4
530,607 - GFF533 0.52 +0.1
530,622 - GFF533 0.54 -0.1
530,626 + GFF533 0.55 +0.4
530,641 - GFF533 0.57 +0.5
530,656 + GFF533 0.59 +1.1
530,658 - GFF533 0.59 +0.2
530,674 + GFF533 0.61 +0.2
530,674 + GFF533 0.61 -0.4
530,683 - GFF533 0.62 -0.0
530,687 + GFF533 0.63 +1.8
530,695 - GFF533 0.64 -0.1
530,715 + GFF533 0.66 +2.2
530,722 + GFF533 0.67 +0.9
530,758 + GFF533 0.72 +0.1
530,760 + GFF533 0.72 +0.5
530,763 + GFF533 0.72 -1.8
530,766 - GFF533 0.73 +0.6
530,768 + GFF533 0.73 -0.4
530,771 - GFF533 0.73 +0.4
530,771 - GFF533 0.73 +0.6
530,771 - GFF533 0.73 +0.2
530,771 - GFF533 0.73 -0.6
530,771 - GFF533 0.73 +0.9
530,771 - GFF533 0.73 +0.9
530,771 - GFF533 0.73 +1.0
530,793 - GFF533 0.76 +0.2
530,805 + GFF533 0.78 -0.1
530,806 - GFF533 0.78 -0.4
530,818 + GFF533 0.79 +0.1
530,826 - GFF533 0.80 +0.4
530,852 + GFF533 0.84 -0.0
530,893 + GFF533 0.89 -0.1
530,916 + +1.2
530,916 + -1.7
530,921 + +1.9
530,924 - -0.7
530,924 - +0.2
530,924 - +1.4
530,943 + +0.2
530,943 + +0.8
530,951 - -0.6
530,951 - +0.1
530,951 - +0.7
530,955 - +1.7
530,956 - -0.4
530,956 - +0.3
530,991 - +1.2
531,033 + -0.3
531,070 + GFF534 0.11 +1.3
531,070 + GFF534 0.11 -0.0
531,070 + GFF534 0.11 +0.4
531,070 + GFF534 0.11 +1.0
531,070 + GFF534 0.11 +0.0
531,078 - GFF534 0.12 -0.9
531,078 - GFF534 0.12 +0.8
531,078 - GFF534 0.12 -0.8
531,078 - GFF534 0.12 -2.0
531,078 - GFF534 0.12 +0.6
531,088 + GFF534 0.13 -0.1
531,091 + GFF534 0.14 -1.5
531,169 + GFF534 0.25 +0.9
531,169 + GFF534 0.25 +0.2
531,220 + GFF534 0.32 -0.2
531,228 - GFF534 0.33 +1.4
531,235 + GFF534 0.34 +0.6
531,243 - GFF534 0.35 -0.5
531,245 + GFF534 0.35 -0.5
531,291 - GFF534 0.42 -0.2
531,345 + GFF534 0.50 -0.4
531,367 + GFF534 0.53 -0.5
531,439 + GFF534 0.63 +0.8
531,439 + GFF534 0.63 -0.5
531,439 + GFF534 0.63 +0.8
531,439 + GFF534 0.63 +1.2
531,444 + GFF534 0.64 -0.6
531,447 - GFF534 0.64 -1.8
531,452 - GFF534 0.65 -1.5
531,463 - GFF534 0.66 -0.4
531,497 + GFF534 0.71 +1.4
531,497 + GFF534 0.71 +0.9
531,497 + GFF534 0.71 -0.2
531,497 + GFF534 0.71 +0.6
531,505 - GFF534 0.72 -0.6
531,505 - GFF534 0.72 -0.9
531,522 - GFF534 0.75 +0.2
531,545 + GFF534 0.78 +0.3
531,545 + GFF534 0.78 -0.4
531,545 + GFF534 0.78 +0.6
531,550 + GFF534 0.79 -1.0
531,553 - GFF534 0.79 -1.4
531,554 + GFF534 0.79 +1.2
531,581 + GFF534 0.83 -1.8
531,584 - GFF534 0.83 -0.1
531,587 + GFF534 0.84 -1.1
531,594 - GFF534 0.85 +1.5
531,594 - GFF534 0.85 +0.7
531,601 - GFF534 0.86 +0.9
531,612 + GFF534 0.87 -0.0
531,636 + -0.5
531,644 - -0.4
531,647 - +1.1
531,777 - GFF535 0.12 +0.6
531,810 - GFF535 0.17 -0.6
531,822 + GFF535 0.19 -0.1
531,824 - GFF535 0.19 +0.4
531,873 - GFF535 0.27 +0.1
531,873 - GFF535 0.27 +0.2
531,887 + GFF535 0.29 -0.1
531,887 + GFF535 0.29 +0.5
531,888 + GFF535 0.29 -0.6
531,888 + GFF535 0.29 +0.1
531,896 - GFF535 0.30 -0.1
531,898 + GFF535 0.30 +0.7
531,901 - GFF535 0.31 -1.5
531,901 - GFF535 0.31 +0.1
531,906 - GFF535 0.32 -0.7
531,932 - GFF535 0.36 +0.7
531,956 + GFF535 0.39 -1.2
531,963 + GFF535 0.40 +0.4
531,964 - GFF535 0.41 +0.5
532,003 + GFF535 0.47 +0.9
532,043 + GFF535 0.53 -1.3
532,066 + GFF535 0.56 -0.2
532,073 + GFF535 0.57 +0.1
532,073 + GFF535 0.57 +0.6
532,080 - GFF535 0.58 -1.0
532,081 - GFF535 0.59 -0.3
532,090 + GFF535 0.60 -3.2
532,096 + GFF535 0.61 -2.8
532,104 - GFF535 0.62 +0.2
532,124 + GFF535 0.65 +0.1
532,162 - GFF535 0.71 -0.5
532,186 - GFF535 0.75 +0.6
532,203 - GFF535 0.77 -0.9
532,218 - GFF535 0.80 -0.5
532,250 - GFF535 0.85 -0.0
532,254 - GFF535 0.85 +0.2
532,256 + GFF535 0.86 +0.6
532,257 + GFF535 0.86 +0.6
532,257 + GFF535 0.86 +0.5
532,265 - GFF535 0.87 -0.7
532,265 - GFF535 0.87 +0.1
532,265 - GFF535 0.87 -0.1
532,265 - GFF535 0.87 -1.5
532,265 - GFF535 0.87 +0.6
532,265 - GFF535 0.87 -1.4
532,265 - GFF535 0.87 -1.5
532,265 - GFF535 0.87 +0.6
532,265 - GFF535 0.87 +0.4
532,279 - GFF535 0.89 -0.6
532,363 - -0.3
532,373 - -1.3
532,378 + +0.4
532,378 + +1.6
532,428 + GFF536 0.20 +0.7
532,431 - GFF536 0.21 +0.9
532,442 - GFF536 0.25 +1.2
532,442 - GFF536 0.25 -0.7
532,464 - GFF536 0.32 -0.4
532,465 - GFF536 0.32 -1.9
532,479 + GFF536 0.36 -2.0
532,527 + GFF536 0.52 +1.1
532,527 + GFF536 0.52 -0.6
532,535 - GFF536 0.54 -1.5
532,535 - GFF536 0.54 +0.5
532,573 - GFF536 0.66 +0.2
532,609 + GFF536 0.77 -1.2
532,609 + GFF536 0.77 +0.0
532,617 - GFF536 0.80 -1.5
532,623 + GFF536 0.82 -1.0
532,651 - -0.5
532,656 - -0.9
532,674 + +0.1
532,674 + -1.3
532,682 - +0.6
532,688 + -1.5
532,688 + -0.9
532,688 + +0.2
532,688 + +0.3
532,689 - -0.1
532,689 - -1.1
532,689 - +0.7
532,693 + -0.6
532,696 - +0.3
532,696 - +0.6
532,696 - +0.2
532,696 - -0.5
532,698 + -0.1
532,698 + -0.8

Or see this region's nucleotide sequence