Strain Fitness in Sphingobium sp. HT1-2 around GFF5313

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,305,648	+		GFF5312	0.64	+0.1
5,305,686	-		GFF5312	0.66	+0.4
5,305,714	+		GFF5312	0.67	-0.0
5,305,736	+		GFF5312	0.68	-0.8
5,305,744	+		GFF5312	0.68	-1.0
5,305,746	+		GFF5312	0.68	+0.1
5,305,746	+		GFF5312	0.68	+0.2
5,305,746	+		GFF5312	0.68	+0.4
5,305,750	+		GFF5312	0.68	+0.5
5,305,750	+		GFF5312	0.68	-0.8
5,305,754	-		GFF5312	0.68	+0.6
5,305,770	+		GFF5312	0.69	-0.1
5,305,781	-		GFF5312	0.69	-0.4
5,305,788	-		GFF5312	0.70	+0.1
5,305,819	+		GFF5312	0.71	+0.1
5,305,850	+		GFF5312	0.72	+0.4
5,305,850	+		GFF5312	0.72	+0.3
5,305,851	-		GFF5312	0.72	+0.5
5,305,851	-		GFF5312	0.72	-0.8
5,305,853	-		GFF5312	0.72	+1.2
5,305,857	+		GFF5312	0.72	+0.5
5,305,858	-		GFF5312	0.72	+0.1
5,305,874	+		GFF5312	0.73	-0.2
5,305,875	+		GFF5312	0.73	-1.8
5,305,882	-		GFF5312	0.73	+0.9
5,305,892	-		GFF5312	0.74	+0.1
5,305,892	-		GFF5312	0.74	-0.6
5,305,892	-		GFF5312	0.74	-0.2
5,305,894	+		GFF5312	0.74	-0.6
5,305,894	+		GFF5312	0.74	+0.1
5,305,897	-		GFF5312	0.74	-0.4
5,305,901	+		GFF5312	0.74	+0.2
5,305,910	+		GFF5312	0.75	+1.2
5,305,916	+		GFF5312	0.75	-0.1
5,305,924	-		GFF5312	0.75	-0.9
5,305,944	+		GFF5312	0.76	-2.0
5,305,944	+		GFF5312	0.76	-2.1
5,305,944	+		GFF5312	0.76	+1.3
5,305,944	+		GFF5312	0.76	+1.3
5,305,952	-		GFF5312	0.76	-0.1
5,305,952	-		GFF5312	0.76	+0.3
5,305,952	-		GFF5312	0.76	-1.6
5,305,952	-		GFF5312	0.76	-1.7
5,305,967	+		GFF5312	0.77	-1.6
5,305,973	+		GFF5312	0.77	+0.1
5,305,974	+		GFF5312	0.77	-1.2
5,305,981	-		GFF5312	0.77	-0.8
5,306,016	+		GFF5312	0.79	+1.3
5,306,016	+		GFF5312	0.79	+0.0
5,306,016	+		GFF5312	0.79	-0.1
5,306,016	-		GFF5312	0.79	-0.4
5,306,022	+		GFF5312	0.79	-0.5
5,306,024	-		GFF5312	0.79	+0.1
5,306,036	+		GFF5312	0.80	+0.8
5,306,064	-		GFF5312	0.81	-0.4
5,306,064	-		GFF5312	0.81	+1.4
5,306,064	-		GFF5312	0.81	-1.5
5,306,069	-		GFF5312	0.81	-0.8
5,306,098	+		GFF5312	0.82	-2.1
5,306,125	-		GFF5312	0.83	-0.4
5,306,137	-		GFF5312	0.84	+0.0
5,306,144	+		GFF5312	0.84	+0.5
5,306,271	-		GFF5312	0.89	+1.4
5,306,280	+		GFF5312	0.89	-0.1
5,306,357	+				+0.1
5,306,361	+				+0.1
5,306,386	-				-1.2
5,306,394	-				-0.1
5,306,438	+				-0.1
5,306,438	+				-0.4
5,306,438	+				-0.5
5,306,443	+				-0.5
5,306,461	+				+0.0
5,306,491	+				-0.7
5,306,491	+				-0.2
5,306,508	+				-0.7
5,306,509	+				-2.2
5,306,509	+				-1.2
5,306,509	+				+0.9
5,306,509	+				-0.8
5,306,509	+				+1.2
5,306,509	+				-2.6
5,306,517	-				+0.4
5,306,517	-				-0.1
5,306,517	-				-0.5
5,306,518	-				+0.3
5,306,523	-				-0.4
5,306,556	-				-0.2
5,306,570	-				-0.1
5,306,585	-				+0.3
5,306,591	+				+1.1
5,306,599	-				+1.1
5,306,639	+				+0.3
5,306,699	+				+1.8
5,306,699	+				+0.5
5,306,706	+				+0.4
5,306,714	-		GFF5313	0.10	-0.0
5,306,745	+		GFF5313	0.13	-2.2
5,306,815	+		GFF5313	0.21	-1.1
5,306,824	-		GFF5313	0.22	+0.2
5,306,829	+		GFF5313	0.23	+0.6
5,306,851	+		GFF5313	0.25	+0.8
5,306,851	+		GFF5313	0.25	-0.5
5,306,851	+		GFF5313	0.25	+0.9
5,306,859	-		GFF5313	0.26	+0.2
5,306,869	+		GFF5313	0.27	+1.5
5,306,878	-		GFF5313	0.28	+0.1
5,306,895	-		GFF5313	0.30	+1.1
5,306,905	+		GFF5313	0.31	-0.4
5,306,914	-		GFF5313	0.32	+1.0
5,306,934	-		GFF5313	0.35	+0.4
5,306,937	+		GFF5313	0.35	-0.2
5,306,937	+		GFF5313	0.35	+0.9
5,306,944	+		GFF5313	0.36	-0.3
5,306,945	-		GFF5313	0.36	+0.2
5,306,945	-		GFF5313	0.36	-0.1
5,306,946	-		GFF5313	0.36	+0.9
5,306,946	-		GFF5313	0.36	+0.1
5,306,978	-		GFF5313	0.39	+0.8
5,306,978	-		GFF5313	0.39	-0.3
5,307,010	+		GFF5313	0.43	+0.1
5,307,024	-		GFF5313	0.45	-0.8
5,307,024	-		GFF5313	0.45	-0.7
5,307,024	-		GFF5313	0.45	+1.1
5,307,058	+		GFF5313	0.48	+0.6
5,307,058	+		GFF5313	0.48	-1.2
5,307,063	+		GFF5313	0.49	-0.8
5,307,094	+		GFF5313	0.52	+0.0
5,307,094	-		GFF5313	0.52	-1.3
5,307,102	-		GFF5313	0.53	-0.7
5,307,102	-		GFF5313	0.53	+0.7
5,307,102	-		GFF5313	0.53	+0.4
5,307,102	-		GFF5313	0.53	-0.2
5,307,102	-		GFF5313	0.53	+0.4
5,307,115	+		GFF5313	0.55	-1.3
5,307,133	-		GFF5313	0.57	-1.8
5,307,177	+		GFF5313	0.62	+1.5
5,307,215	+		GFF5313	0.66	-0.2
5,307,217	+		GFF5313	0.66	+0.2
5,307,223	-		GFF5313	0.67	-1.9
5,307,254	+		GFF5313	0.70	+0.2
5,307,258	-		GFF5313	0.71	-0.7
5,307,260	-		GFF5313	0.71	-2.2
5,307,286	+		GFF5313	0.74	+0.4
5,307,291	+		GFF5313	0.74	+0.7
5,307,291	+		GFF5313	0.74	+1.0
5,307,294	-		GFF5313	0.75	-0.1
5,307,296	+		GFF5313	0.75	+0.5
5,307,304	+		GFF5313	0.76	+0.3
5,307,322	-		GFF5313	0.78	-0.2
5,307,327	-		GFF5313	0.78	+0.7
5,307,354	+		GFF5313	0.81	+0.2
5,307,362	+		GFF5313	0.82	-0.9
5,307,362	+		GFF5313	0.82	-0.3
5,307,362	+		GFF5313	0.82	-0.2
5,307,362	+		GFF5313	0.82	+1.0
5,307,362	+		GFF5313	0.82	-1.2
5,307,362	+		GFF5313	0.82	-0.7
5,307,370	-		GFF5313	0.83	+0.1
5,307,370	-		GFF5313	0.83	-0.2
5,307,370	-		GFF5313	0.83	-1.6
5,307,370	-		GFF5313	0.83	+0.3
5,307,370	-		GFF5313	0.83	+0.5
5,307,370	-		GFF5313	0.83	+0.2
5,307,370	-		GFF5313	0.83	+0.9
5,307,370	-		GFF5313	0.83	-0.2
5,307,370	-		GFF5313	0.83	+0.6
5,307,370	-		GFF5313	0.83	+0.8
5,307,370	-		GFF5313	0.83	+1.2
5,307,381	+		GFF5313	0.84	-0.4
5,307,381	+		GFF5313	0.84	+0.8
5,307,389	-		GFF5313	0.85	+1.6
5,307,389	-		GFF5313	0.85	-0.2
5,307,398	+		GFF5313	0.86	-0.7
5,307,398	+		GFF5313	0.86	-1.1
5,307,406	-		GFF5313	0.87	-0.2
5,307,412	+		GFF5313	0.88	-0.2
5,307,419	+		GFF5313	0.89	-0.1
5,307,420	-		GFF5313	0.89	+0.3
5,307,426	+		GFF5313	0.89	+1.1
5,307,427	-		GFF5313	0.90	-0.0
5,307,462	-				-0.9
5,307,486	-				-0.7
5,307,639	+		GFF5314	0.21	+0.1
5,307,639	+		GFF5314	0.21	-0.1
5,307,639	+		GFF5314	0.21	+0.2
5,307,647	-		GFF5314	0.22	-0.6
5,307,669	-		GFF5314	0.26	+0.4
5,307,677	-		GFF5314	0.27	+0.3
5,307,677	-		GFF5314	0.27	+0.9
5,307,677	-		GFF5314	0.27	+0.3
5,307,677	-		GFF5314	0.27	-1.7
5,307,691	+		GFF5314	0.30	-1.7
5,307,719	+		GFF5314	0.35	-0.2
5,307,719	+		GFF5314	0.35	-0.0
5,307,734	-		GFF5314	0.37	-0.8
5,307,739	-		GFF5314	0.38	-0.5
5,307,759	+		GFF5314	0.41	-1.1
5,307,776	-		GFF5314	0.44	+0.2
5,307,781	-		GFF5314	0.45	-0.7
5,307,846	+		GFF5314	0.57	-0.8
5,307,879	-		GFF5314	0.62	+1.4
5,307,909	+		GFF5314	0.68	+0.1
5,307,909	+		GFF5314	0.68	-0.5
5,307,909	+		GFF5314	0.68	+0.5
5,307,909	+		GFF5314	0.68	-0.1
5,307,964	+		GFF5314	0.77	+0.8
5,307,964	+		GFF5314	0.77	+0.7
5,307,972	-		GFF5314	0.78	-0.1
5,307,972	-		GFF5314	0.78	-0.5
5,307,972	-		GFF5314	0.78	+0.1
5,307,987	-		GFF5314	0.81	-1.7
5,308,004	-		GFF5314	0.84	-0.4
5,308,006	-		GFF5314	0.84	-2.1
5,308,019	+		GFF5314	0.87	-0.7
5,308,051	+				-0.9
5,308,080	+				-1.7
5,308,088	-				-2.9
5,308,108	+				-1.2
5,308,108	+				+0.8
5,308,108	+				+0.5
5,308,116	-				-1.7
5,308,116	-				-0.2
5,308,116	-				-0.2
5,308,176	-				-1.7
5,308,198	-				+0.8
5,308,220	+				+0.5
5,308,220	+				-0.7
5,308,228	-				-0.2
5,308,228	-				+0.2
5,308,228	-				+0.5
5,308,230	+				-0.1
5,308,250	+				-1.4
5,308,250	+				-2.3
5,308,263	+				-0.8
5,308,275	+				-1.8
5,308,288	-				+0.3
5,308,303	+				-0.7
5,308,303	+				-0.2
5,308,303	+				-1.9
5,308,316	-				-2.1
5,308,318	+				+0.8
5,308,326	-				-0.7
5,308,326	-				+0.9
5,308,327	-				-1.7
5,308,334	-				+1.2
5,308,402	+		GFF5315	0.12	-0.2
5,308,402	+		GFF5315	0.12	+0.0
5,308,412	+		GFF5315	0.13	-1.8
5,308,412	+		GFF5315	0.13	-1.2
5,308,420	-		GFF5315	0.13	+1.4
5,308,422	+		GFF5315	0.13	+0.5
5,308,425	-		GFF5315	0.14	+0.1
5,308,435	-		GFF5315	0.14	+0.2
5,308,441	-		GFF5315	0.15	+0.5
5,308,445	-		GFF5315	0.15	-0.5
5,308,445	-		GFF5315	0.15	+0.2
5,308,501	+		GFF5315	0.19	+0.3