Strain Fitness in Sphingobium sp. HT1-2 around GFF5296

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,285,415	+		GFF5295	0.31	-1.7
5,285,415	-		GFF5295	0.31	-1.6
5,285,417	+		GFF5295	0.31	+0.1
5,285,425	-		GFF5295	0.32	-1.1
5,285,425	-		GFF5295	0.32	-0.8
5,285,425	-		GFF5295	0.32	-2.0
5,285,449	+		GFF5295	0.34	+0.9
5,285,664	-		GFF5295	0.52	-2.3
5,285,894	+		GFF5295	0.71	-1.7
5,286,003	+		GFF5295	0.80	-0.1
5,286,011	-		GFF5295	0.81	-0.1
5,286,019	-		GFF5295	0.82	-0.8
5,286,024	+		GFF5295	0.82	-1.4
5,286,048	+		GFF5295	0.84	-0.7
5,286,050	+		GFF5295	0.84	+0.2
5,286,050	+		GFF5295	0.84	-1.3
5,286,093	+		GFF5295	0.88	-0.2
5,286,093	+		GFF5295	0.88	-0.8
5,286,098	+		GFF5295	0.88	-0.3
5,286,106	-		GFF5295	0.89	-1.8
5,286,110	+		GFF5295	0.89	-0.3
5,286,118	-				-1.2
5,286,118	-				-1.3
5,286,140	+				-0.8
5,286,142	+				-1.3
5,286,142	+				-0.2
5,286,150	-				-0.6
5,286,172	+				-0.9
5,286,172	+				-0.8
5,286,194	+				-0.3
5,286,202	-				-0.7
5,286,225	-				-0.7
5,286,225	-				-0.2
5,286,225	-				-1.4
5,286,225	-				-1.9
5,286,225	-				-0.2
5,286,225	-				-0.5
5,286,225	-				+0.4
5,286,227	+				-0.3
5,286,231	+				-0.0
5,286,231	+				-0.4
5,286,231	+				-1.4
5,286,239	-				-1.2
5,286,239	-				+0.2
5,286,264	+				-0.6
5,286,269	-				-1.8
5,286,276	+				-0.1
5,286,288	+				-1.4
5,286,292	+				-1.3
5,286,304	-				-0.8
5,286,321	-				-0.2
5,286,323	-				-0.9
5,286,338	+				+0.7
5,286,349	+				-1.1
5,286,370	+				-0.2
5,286,370	+				-2.1
5,286,372	+				-1.5
5,286,372	+				-0.2
5,286,372	+				-0.4
5,286,373	-				+0.1
5,286,373	-				-0.8
5,286,373	-				-0.1
5,286,383	-				+0.3
5,286,385	+				-0.4
5,286,387	+				-0.0
5,286,393	-				-1.9
5,286,395	-				-0.5
5,286,416	+				-1.2
5,286,416	+				-0.6
5,286,416	+				-2.9
5,286,429	+				-0.4
5,286,429	+				-0.2
5,286,437	-				-0.5
5,286,437	-				-0.6
5,286,437	-				-0.6
5,286,439	+				+0.9
5,286,439	+				-0.1
5,286,440	+				+0.1
5,286,440	+				-1.3
5,286,440	+				+1.4
5,286,448	-				-2.1
5,286,448	-				+0.4
5,286,448	-				-0.7
5,286,448	-				-0.7
5,286,448	-				-2.3
5,286,456	-				-1.7
5,286,457	-				-1.5
5,286,469	-				-0.2
5,286,490	+				+0.4
5,286,498	-				-0.7
5,286,500	-				+0.3
5,286,502	+				-2.2
5,286,502	+				-0.1
5,286,502	+				-0.5
5,286,505	-				-0.4
5,286,507	+				-0.4
5,286,510	-				-3.4
5,286,510	-				-0.1
5,286,510	-				-0.8
5,286,510	-				-0.6
5,286,510	-				-0.2
5,286,510	-				-1.3
5,286,510	-				-0.1
5,286,510	-				-0.6
5,286,510	-				+1.2
5,286,517	-				+0.4
5,286,517	-				-1.6
5,286,518	-				+0.2
5,286,522	-				+0.2
5,286,527	-				-0.7
5,286,529	+				-1.2
5,286,534	+		GFF5296	0.10	+1.8
5,286,534	+		GFF5296	0.10	-0.1
5,286,535	+		GFF5296	0.10	-1.9
5,286,542	-		GFF5296	0.11	+0.1
5,286,542	-		GFF5296	0.11	-2.6
5,286,542	-		GFF5296	0.11	+0.2
5,286,542	-		GFF5296	0.11	+1.0
5,286,542	-		GFF5296	0.11	+0.6
5,286,543	-		GFF5296	0.11	-1.2
5,286,550	+		GFF5296	0.12	-2.1
5,286,556	-		GFF5296	0.12	-1.1
5,286,558	-		GFF5296	0.12	+0.1
5,286,568	-		GFF5296	0.13	-0.5
5,286,568	-		GFF5296	0.13	-0.1
5,286,568	-		GFF5296	0.13	-2.2
5,286,577	-		GFF5296	0.14	-1.7
5,286,584	+		GFF5296	0.14	-0.8
5,286,639	+		GFF5296	0.19	-0.9
5,286,639	+		GFF5296	0.19	-2.3
5,286,639	+		GFF5296	0.19	+0.1
5,286,639	+		GFF5296	0.19	-0.5
5,286,647	-		GFF5296	0.20	-1.2
5,286,647	-		GFF5296	0.20	-0.0
5,286,647	-		GFF5296	0.20	-1.3
5,286,649	-		GFF5296	0.20	-1.8
5,286,649	-		GFF5296	0.20	-0.8
5,286,657	-		GFF5296	0.21	-0.8
5,286,669	-		GFF5296	0.22	-1.2
5,286,669	-		GFF5296	0.22	-0.9
5,286,671	-		GFF5296	0.22	-1.0
5,286,672	-		GFF5296	0.22	-0.5
5,286,678	+		GFF5296	0.22	-2.8
5,286,678	+		GFF5296	0.22	-1.4
5,286,678	+		GFF5296	0.22	-1.7
5,286,685	+		GFF5296	0.23	-0.9
5,286,693	-		GFF5296	0.24	-1.1
5,286,695	-		GFF5296	0.24	-1.2
5,286,695	-		GFF5296	0.24	-1.4
5,286,702	-		GFF5296	0.24	-1.3
5,286,708	-		GFF5296	0.25	-0.1
5,286,712	+		GFF5296	0.25	-1.0
5,286,720	-		GFF5296	0.26	-1.5
5,286,746	+		GFF5296	0.28	-2.8
5,286,746	+		GFF5296	0.28	-0.6
5,286,746	+		GFF5296	0.28	+0.8
5,286,746	+		GFF5296	0.28	-3.1
5,286,746	+		GFF5296	0.28	-0.1
5,286,746	+		GFF5296	0.28	-0.4
5,286,746	+		GFF5296	0.28	-0.6
5,286,746	+		GFF5296	0.28	-0.7
5,286,746	+		GFF5296	0.28	-1.2
5,286,746	+		GFF5296	0.28	-0.3
5,286,746	+		GFF5296	0.28	-2.1
5,286,746	+		GFF5296	0.28	-1.8
5,286,746	+		GFF5296	0.28	-2.0
5,286,746	+		GFF5296	0.28	-2.2
5,286,746	+		GFF5296	0.28	-0.5
5,286,746	+		GFF5296	0.28	-0.6
5,286,746	+		GFF5296	0.28	-1.1
5,286,746	+		GFF5296	0.28	-2.2
5,286,746	+		GFF5296	0.28	+0.1
5,286,746	+		GFF5296	0.28	-1.1
5,286,746	+		GFF5296	0.28	-1.8
5,286,746	+		GFF5296	0.28	-2.8
5,286,754	-		GFF5296	0.29	-0.5
5,286,754	-		GFF5296	0.29	-0.2
5,286,754	-		GFF5296	0.29	-1.0
5,286,754	-		GFF5296	0.29	-0.6
5,286,754	-		GFF5296	0.29	-2.1
5,286,754	-		GFF5296	0.29	-0.7
5,286,754	-		GFF5296	0.29	-0.2
5,286,754	-		GFF5296	0.29	-1.9
5,286,754	-		GFF5296	0.29	-0.5
5,286,754	-		GFF5296	0.29	+0.3
5,286,754	-		GFF5296	0.29	-0.9
5,286,754	-		GFF5296	0.29	-2.3
5,286,754	-		GFF5296	0.29	-1.8
5,286,754	-		GFF5296	0.29	+0.8
5,286,754	-		GFF5296	0.29	-1.5
5,286,767	+		GFF5296	0.30	-0.6
5,286,767	+		GFF5296	0.30	-1.1
5,286,767	+		GFF5296	0.30	+0.0
5,286,767	+		GFF5296	0.30	-1.9
5,286,773	-		GFF5296	0.30	-0.4
5,286,775	-		GFF5296	0.31	-1.7
5,286,775	-		GFF5296	0.31	-0.5
5,286,775	-		GFF5296	0.31	-0.8
5,286,775	-		GFF5296	0.31	-1.9
5,286,775	-		GFF5296	0.31	-0.3
5,286,775	-		GFF5296	0.31	+0.8
5,286,776	+		GFF5296	0.31	+0.5
5,286,825	+		GFF5296	0.35	-1.5
5,286,825	+		GFF5296	0.35	-1.5
5,286,830	+		GFF5296	0.35	-0.4
5,286,830	+		GFF5296	0.35	-1.8
5,286,838	-		GFF5296	0.36	-0.1
5,286,838	-		GFF5296	0.36	+0.2
5,286,838	-		GFF5296	0.36	-1.3
5,286,840	+		GFF5296	0.36	-2.2
5,286,848	+		GFF5296	0.37	-2.7
5,286,848	+		GFF5296	0.37	-3.6
5,286,848	+		GFF5296	0.37	+0.2
5,286,848	+		GFF5296	0.37	-2.2
5,286,848	+		GFF5296	0.37	-1.7
5,286,856	-		GFF5296	0.37	-0.4
5,286,856	-		GFF5296	0.37	-0.0
5,286,861	+		GFF5296	0.38	-0.7
5,286,864	+		GFF5296	0.38	-0.8
5,286,869	-		GFF5296	0.38	-1.5
5,286,869	-		GFF5296	0.38	-0.9
5,286,869	-		GFF5296	0.38	-1.9
5,286,879	-		GFF5296	0.39	+1.3
5,286,879	-		GFF5296	0.39	-1.1
5,286,887	-		GFF5296	0.40	+0.6
5,286,896	+		GFF5296	0.41	-1.0
5,286,896	+		GFF5296	0.41	-1.7
5,286,896	+		GFF5296	0.41	-0.9
5,286,920	+		GFF5296	0.43	-1.6
5,286,926	-		GFF5296	0.43	+0.4
5,286,928	-		GFF5296	0.43	+0.2
5,286,934	+		GFF5296	0.44	-0.7
5,286,937	-		GFF5296	0.44	+0.0
5,286,940	+		GFF5296	0.44	-1.1
5,286,940	+		GFF5296	0.44	-1.2
5,286,942	-		GFF5296	0.45	-1.1
5,286,949	+		GFF5296	0.45	+0.6
5,286,949	-		GFF5296	0.45	-1.8
5,286,949	-		GFF5296	0.45	-2.2
5,286,949	-		GFF5296	0.45	-0.9
5,286,957	-		GFF5296	0.46	+0.9
5,287,003	+		GFF5296	0.50	-1.6
5,287,010	+		GFF5296	0.50	+0.3
5,287,011	-		GFF5296	0.50	-3.2
5,287,023	+		GFF5296	0.51	-0.9
5,287,023	+		GFF5296	0.51	-0.2
5,287,028	+		GFF5296	0.52	-1.7
5,287,028	+		GFF5296	0.52	+0.1
5,287,028	+		GFF5296	0.52	-1.1
5,287,028	+		GFF5296	0.52	-0.4
5,287,031	-		GFF5296	0.52	-0.5
5,287,031	-		GFF5296	0.52	-0.7
5,287,031	-		GFF5296	0.52	-0.2
5,287,031	-		GFF5296	0.52	-0.6
5,287,033	+		GFF5296	0.52	+0.2
5,287,033	+		GFF5296	0.52	-0.8
5,287,033	+		GFF5296	0.52	-0.8
5,287,034	-		GFF5296	0.52	-1.8
5,287,036	-		GFF5296	0.53	-1.3
5,287,036	-		GFF5296	0.53	-0.7
5,287,036	-		GFF5296	0.53	-2.8
5,287,036	-		GFF5296	0.53	-2.5
5,287,038	+		GFF5296	0.53	-2.8
5,287,038	+		GFF5296	0.53	-1.5
5,287,046	+		GFF5296	0.53	-0.9
5,287,046	+		GFF5296	0.53	-1.8
5,287,046	+		GFF5296	0.53	+0.8
5,287,046	+		GFF5296	0.53	-0.6
5,287,046	+		GFF5296	0.53	-1.2
5,287,046	+		GFF5296	0.53	-0.8
5,287,054	-		GFF5296	0.54	-1.2
5,287,054	-		GFF5296	0.54	-0.2
5,287,054	-		GFF5296	0.54	-1.8
5,287,103	-		GFF5296	0.58	-0.1
5,287,103	-		GFF5296	0.58	-2.1
5,287,103	-		GFF5296	0.58	-0.2
5,287,115	-		GFF5296	0.59	-1.7
5,287,120	+		GFF5296	0.60	-2.2
5,287,130	-		GFF5296	0.60	-1.1
5,287,144	-		GFF5296	0.62	+0.7
5,287,161	-		GFF5296	0.63	+0.5
5,287,167	+		GFF5296	0.64	-0.0
5,287,174	+		GFF5296	0.64	-0.1
5,287,184	+		GFF5296	0.65	-1.9
5,287,184	+		GFF5296	0.65	-0.3
5,287,184	+		GFF5296	0.65	-2.1
5,287,184	+		GFF5296	0.65	-1.0
5,287,184	+		GFF5296	0.65	+0.2
5,287,184	+		GFF5296	0.65	-2.8
5,287,184	+		GFF5296	0.65	+0.6
5,287,184	+		GFF5296	0.65	+0.5
5,287,184	+		GFF5296	0.65	-1.4
5,287,184	+		GFF5296	0.65	-0.7
5,287,192	-		GFF5296	0.66	+0.1
5,287,192	-		GFF5296	0.66	-0.2
5,287,192	-		GFF5296	0.66	-2.1
5,287,192	-		GFF5296	0.66	-0.0
5,287,192	-		GFF5296	0.66	+0.2
5,287,192	-		GFF5296	0.66	-0.9
5,287,212	+		GFF5296	0.67	-0.8
5,287,219	+		GFF5296	0.68	-1.2
5,287,220	+		GFF5296	0.68	-0.9
5,287,220	+		GFF5296	0.68	-1.3
5,287,226	+		GFF5296	0.69	-0.6
5,287,226	+		GFF5296	0.69	-0.9
5,287,227	+		GFF5296	0.69	+0.3
5,287,227	-		GFF5296	0.69	-2.9
5,287,227	-		GFF5296	0.69	-3.1
5,287,228	-		GFF5296	0.69	-2.6
5,287,231	+		GFF5296	0.69	-0.6
5,287,234	-		GFF5296	0.69	-1.6
5,287,322	+		GFF5296	0.77	-0.8
5,287,322	+		GFF5296	0.77	-0.3
5,287,322	+		GFF5296	0.77	-1.2
5,287,322	+		GFF5296	0.77	-3.3
5,287,330	-		GFF5296	0.77	-0.6
5,287,330	-		GFF5296	0.77	-0.2
5,287,332	+		GFF5296	0.77	-0.2
5,287,404	+		GFF5296	0.84	-1.9
5,287,412	-		GFF5296	0.84	-1.0
5,287,412	-		GFF5296	0.84	+1.0
5,287,449	+		GFF5296	0.87	-0.4
5,287,457	-		GFF5296	0.88	-1.8
5,287,513	+				-1.6
5,287,513	+				-1.7
5,287,874	+				-2.1
5,287,874	+				-1.2
5,287,882	-				-1.6
5,287,899	+				-1.8
5,287,899	-				-0.2
5,287,907	-				-0.8
5,287,936	-				+0.5
5,287,944	+				-1.1
5,287,963	+				-2.5
5,287,968	+				-1.1
5,287,968	+				-0.3
5,287,971	-				-0.2
5,287,971	-				+0.3
5,287,978	+				-2.2
5,287,986	-				-1.5
5,287,986	-				-0.8
5,287,988	-				-0.4
5,287,988	-				-0.4
5,287,988	-				+0.6
5,287,988	-				-0.1
5,288,029	-				-0.7
5,288,029	-				-0.3
5,288,030	-				-1.7
5,288,070	+				-1.1
5,288,070	+				-0.2
5,288,139	+		GFF5297	0.15	+0.4
5,288,154	-		GFF5297	0.16	-0.1
5,288,160	+		GFF5297	0.17	-0.9
5,288,168	-		GFF5297	0.18	-1.2
5,288,170	+		GFF5297	0.18	-0.4
5,288,178	-		GFF5297	0.19	+0.0
5,288,186	-		GFF5297	0.20	-2.5
5,288,186	-		GFF5297	0.20	-1.1
5,288,186	-		GFF5297	0.20	-0.3
5,288,186	-		GFF5297	0.20	+0.4
5,288,186	-		GFF5297	0.20	-0.2
5,288,186	-		GFF5297	0.20	-1.8
5,288,193	+		GFF5297	0.21	-2.2
5,288,201	-		GFF5297	0.22	-0.6
5,288,206	+		GFF5297	0.23	-0.5
5,288,235	-		GFF5297	0.27	+0.9
5,288,245	+		GFF5297	0.28	-0.2
5,288,252	+		GFF5297	0.29	-1.2
5,288,253	+		GFF5297	0.29	-1.1
5,288,253	-		GFF5297	0.29	-0.8
5,288,253	-		GFF5297	0.29	-3.0
5,288,271	-		GFF5297	0.31	-0.0
5,288,271	-		GFF5297	0.31	-1.1
5,288,271	-		GFF5297	0.31	-0.5
5,288,289	+		GFF5297	0.33	+0.5
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