Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF527 and GFF528 are separated by 111 nucleotides GFF528 and GFF529 are separated by 5 nucleotides GFF529 and GFF530 are separated by 38 nucleotides
GFF527 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 524,843 to 525,766
GFF527
GFF528 - Muconate cycloisomerase (EC 5.5.1.1), at 525,878 to 527,035
GFF528
GFF529 - Muconolactone isomerase (EC 5.3.3.4), at 527,041 to 527,331
GFF529
GFF530 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 527,370 to 528,296
GFF530
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.880 kb on - strand at 524.880 kb on - strand at 524.880 kb on - strand at 524.880 kb on - strand at 524.880 kb on - strand at 524.912 kb on - strand at 524.928 kb on - strand at 524.953 kb on + strand, within GFF527 at 524.955 kb on - strand, within GFF527 at 524.979 kb on + strand, within GFF527 at 524.989 kb on + strand, within GFF527 at 524.998 kb on + strand, within GFF527 at 524.998 kb on + strand, within GFF527 at 525.012 kb on - strand, within GFF527 at 525.025 kb on + strand, within GFF527 at 525.078 kb on - strand, within GFF527 at 525.088 kb on - strand, within GFF527 at 525.105 kb on - strand, within GFF527 at 525.112 kb on - strand, within GFF527 at 525.115 kb on + strand, within GFF527 at 525.141 kb on + strand, within GFF527 at 525.149 kb on - strand, within GFF527 at 525.149 kb on - strand, within GFF527 at 525.149 kb on - strand, within GFF527 at 525.162 kb on - strand, within GFF527 at 525.196 kb on - strand, within GFF527 at 525.272 kb on + strand, within GFF527 at 525.272 kb on - strand, within GFF527 at 525.289 kb on + strand, within GFF527 at 525.289 kb on + strand, within GFF527 at 525.289 kb on + strand, within GFF527 at 525.289 kb on + strand, within GFF527 at 525.302 kb on + strand, within GFF527 at 525.330 kb on - strand, within GFF527 at 525.371 kb on - strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.373 kb on + strand, within GFF527 at 525.376 kb on - strand, within GFF527 at 525.379 kb on + strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.381 kb on - strand, within GFF527 at 525.393 kb on + strand, within GFF527 at 525.393 kb on + strand, within GFF527 at 525.401 kb on - strand, within GFF527 at 525.401 kb on - strand, within GFF527 at 525.401 kb on - strand, within GFF527 at 525.488 kb on - strand, within GFF527 at 525.537 kb on + strand, within GFF527 at 525.631 kb on - strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.668 kb on + strand, within GFF527 at 525.676 kb on - strand at 525.676 kb on - strand at 525.676 kb on - strand at 525.676 kb on - strand at 525.676 kb on - strand at 525.676 kb on - strand at 525.676 kb on - strand at 525.690 kb on - strand at 525.736 kb on + strand at 525.779 kb on - strand at 525.795 kb on - strand at 525.831 kb on + strand at 525.951 kb on - strand at 525.964 kb on - strand at 525.969 kb on - strand at 525.982 kb on - strand at 526.004 kb on + strand, within GFF528 at 526.010 kb on - strand, within GFF528 at 526.010 kb on - strand, within GFF528 at 526.010 kb on - strand, within GFF528 at 526.012 kb on - strand, within GFF528 at 526.038 kb on - strand, within GFF528 at 526.045 kb on - strand, within GFF528 at 526.046 kb on - strand, within GFF528 at 526.047 kb on - strand, within GFF528 at 526.067 kb on - strand, within GFF528 at 526.097 kb on - strand, within GFF528 at 526.121 kb on - strand, within GFF528 at 526.132 kb on - strand, within GFF528 at 526.144 kb on + strand, within GFF528 at 526.144 kb on + strand, within GFF528 at 526.202 kb on + strand, within GFF528 at 526.226 kb on + strand, within GFF528 at 526.252 kb on + strand, within GFF528 at 526.260 kb on - strand, within GFF528 at 526.260 kb on - strand, within GFF528 at 526.270 kb on + strand, within GFF528 at 526.270 kb on - strand, within GFF528 at 526.300 kb on + strand, within GFF528 at 526.308 kb on - strand, within GFF528 at 526.314 kb on - strand, within GFF528 at 526.314 kb on - strand, within GFF528 at 526.314 kb on - strand, within GFF528 at 526.318 kb on + strand, within GFF528 at 526.323 kb on + strand, within GFF528 at 526.342 kb on - strand, within GFF528 at 526.405 kb on - strand, within GFF528 at 526.405 kb on - strand, within GFF528 at 526.406 kb on + strand, within GFF528 at 526.437 kb on - strand, within GFF528 at 526.472 kb on + strand, within GFF528 at 526.472 kb on + strand, within GFF528 at 526.472 kb on + strand, within GFF528 at 526.482 kb on + strand, within GFF528 at 526.495 kb on + strand, within GFF528 at 526.501 kb on + strand, within GFF528 at 526.517 kb on - strand, within GFF528 at 526.519 kb on + strand, within GFF528 at 526.538 kb on - strand, within GFF528 at 526.602 kb on - strand, within GFF528 at 526.642 kb on - strand, within GFF528 at 526.652 kb on - strand, within GFF528 at 526.659 kb on + strand, within GFF528 at 526.667 kb on - strand, within GFF528 at 526.688 kb on + strand, within GFF528 at 526.722 kb on - strand, within GFF528 at 526.831 kb on + strand, within GFF528 at 526.878 kb on - strand, within GFF528 at 526.904 kb on - strand, within GFF528 at 526.938 kb on + strand at 526.938 kb on + strand at 526.938 kb on + strand at 526.938 kb on + strand at 526.943 kb on + strand at 526.943 kb on + strand at 526.946 kb on - strand at 526.946 kb on - strand at 526.946 kb on - strand at 526.946 kb on - strand at 526.951 kb on - strand at 526.951 kb on - strand at 526.951 kb on - strand at 526.956 kb on + strand at 526.963 kb on - strand at 526.964 kb on - strand at 526.964 kb on - strand at 526.964 kb on - strand at 526.966 kb on + strand at 526.974 kb on - strand at 527.032 kb on - strand at 527.036 kb on + strand at 527.044 kb on - strand at 527.044 kb on - strand at 527.106 kb on + strand, within GFF529 at 527.114 kb on - strand, within GFF529 at 527.114 kb on - strand, within GFF529 at 527.171 kb on + strand, within GFF529 at 527.197 kb on + strand, within GFF529 at 527.217 kb on + strand, within GFF529 at 527.217 kb on + strand, within GFF529 at 527.217 kb on + strand, within GFF529 at 527.225 kb on - strand, within GFF529 at 527.230 kb on - strand, within GFF529 at 527.263 kb on + strand, within GFF529 at 527.294 kb on + strand, within GFF529 at 527.300 kb on - strand, within GFF529 at 527.328 kb on - strand at 527.334 kb on + strand at 527.353 kb on + strand at 527.361 kb on - strand at 527.361 kb on - strand at 527.377 kb on - strand at 527.409 kb on + strand at 527.409 kb on + strand at 527.427 kb on + strand at 527.464 kb on - strand, within GFF530 at 527.481 kb on + strand, within GFF530 at 527.488 kb on - strand, within GFF530 at 527.489 kb on - strand, within GFF530 at 527.517 kb on - strand, within GFF530 at 527.526 kb on + strand, within GFF530 at 527.531 kb on + strand, within GFF530 at 527.534 kb on + strand, within GFF530 at 527.534 kb on - strand, within GFF530 at 527.540 kb on - strand, within GFF530 at 527.578 kb on + strand, within GFF530 at 527.578 kb on + strand, within GFF530 at 527.586 kb on - strand, within GFF530 at 527.601 kb on - strand, within GFF530 at 527.613 kb on - strand, within GFF530 at 527.627 kb on + strand, within GFF530 at 527.635 kb on - strand, within GFF530 at 527.693 kb on + strand, within GFF530 at 527.693 kb on + strand, within GFF530 at 527.701 kb on - strand, within GFF530 at 527.723 kb on + strand, within GFF530 at 527.766 kb on + strand, within GFF530 at 527.766 kb on + strand, within GFF530 at 527.768 kb on + strand, within GFF530 at 527.768 kb on + strand, within GFF530 at 527.768 kb on + strand, within GFF530 at 527.768 kb on + strand, within GFF530 at 527.776 kb on - strand, within GFF530 at 527.776 kb on - strand, within GFF530 at 527.776 kb on - strand, within GFF530 at 527.776 kb on - strand, within GFF530 at 527.817 kb on + strand, within GFF530 at 527.825 kb on - strand, within GFF530 at 527.830 kb on - strand, within GFF530 at 527.831 kb on - strand, within GFF530 at 527.859 kb on - strand, within GFF530 at 527.877 kb on + strand, within GFF530 at 527.883 kb on - strand, within GFF530 at 527.883 kb on - strand, within GFF530 at 527.930 kb on + strand, within GFF530 at 527.932 kb on + strand, within GFF530 at 527.938 kb on - strand, within GFF530 at 527.944 kb on + strand, within GFF530 at 527.945 kb on - strand, within GFF530 at 527.965 kb on + strand, within GFF530 at 527.978 kb on - strand, within GFF530 at 528.007 kb on - strand, within GFF530 at 528.007 kb on - strand, within GFF530
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 524,880 - -1.1 524,880 - -0.6 524,880 - -1.4 524,880 - +0.1 524,880 - -0.4 524,912 - -1.2 524,928 - -0.0 524,953 + GFF527 0.12 -0.5 524,955 - GFF527 0.12 -0.8 524,979 + GFF527 0.15 +0.3 524,989 + GFF527 0.16 -0.2 524,998 + GFF527 0.17 -0.6 524,998 + GFF527 0.17 -0.3 525,012 - GFF527 0.18 -0.4 525,025 + GFF527 0.20 -1.1 525,078 - GFF527 0.25 -0.4 525,088 - GFF527 0.27 -0.8 525,105 - GFF527 0.28 -0.5 525,112 - GFF527 0.29 +0.2 525,115 + GFF527 0.29 +1.2 525,141 + GFF527 0.32 -0.2 525,149 - GFF527 0.33 -2.0 525,149 - GFF527 0.33 +0.2 525,149 - GFF527 0.33 -0.5 525,162 - GFF527 0.35 +2.2 525,196 - GFF527 0.38 +1.5 525,272 + GFF527 0.46 +0.2 525,272 - GFF527 0.46 +1.8 525,289 + GFF527 0.48 -0.5 525,289 + GFF527 0.48 -0.5 525,289 + GFF527 0.48 +0.9 525,289 + GFF527 0.48 -0.7 525,302 + GFF527 0.50 +0.3 525,330 - GFF527 0.53 +0.5 525,371 - GFF527 0.57 -0.5 525,373 + GFF527 0.57 -0.7 525,373 + GFF527 0.57 -1.4 525,373 + GFF527 0.57 -0.1 525,373 + GFF527 0.57 -0.5 525,373 + GFF527 0.57 +0.4 525,373 + GFF527 0.57 -1.7 525,373 + GFF527 0.57 -0.2 525,373 + GFF527 0.57 -0.1 525,376 - GFF527 0.58 +0.8 525,379 + GFF527 0.58 -0.0 525,381 - GFF527 0.58 -0.6 525,381 - GFF527 0.58 -0.3 525,381 - GFF527 0.58 -1.4 525,381 - GFF527 0.58 +0.4 525,381 - GFF527 0.58 +0.8 525,381 - GFF527 0.58 -0.5 525,393 + GFF527 0.60 +0.6 525,393 + GFF527 0.60 -1.1 525,401 - GFF527 0.60 +1.8 525,401 - GFF527 0.60 +1.1 525,401 - GFF527 0.60 +0.7 525,488 - GFF527 0.70 -1.6 525,537 + GFF527 0.75 +0.1 525,631 - GFF527 0.85 +0.5 525,668 + GFF527 0.89 +0.4 525,668 + GFF527 0.89 +1.6 525,668 + GFF527 0.89 +0.2 525,668 + GFF527 0.89 +0.5 525,668 + GFF527 0.89 -0.3 525,668 + GFF527 0.89 -0.9 525,668 + GFF527 0.89 -0.8 525,668 + GFF527 0.89 -1.1 525,676 - +0.2 525,676 - -0.0 525,676 - +0.7 525,676 - +1.3 525,676 - +0.0 525,676 - +0.4 525,676 - +1.3 525,690 - -1.5 525,736 + -1.2 525,779 - +1.2 525,795 - -1.6 525,831 + -1.0 525,951 - +0.1 525,964 - -0.4 525,969 - -1.4 525,982 - -0.5 526,004 + GFF528 0.11 -0.5 526,010 - GFF528 0.11 -0.8 526,010 - GFF528 0.11 +1.1 526,010 - GFF528 0.11 -0.4 526,012 - GFF528 0.12 -1.1 526,038 - GFF528 0.14 +1.8 526,045 - GFF528 0.14 +0.2 526,046 - GFF528 0.15 -0.9 526,047 - GFF528 0.15 -0.4 526,067 - GFF528 0.16 +0.6 526,097 - GFF528 0.19 -0.5 526,121 - GFF528 0.21 -1.2 526,132 - GFF528 0.22 +0.6 526,144 + GFF528 0.23 -2.0 526,144 + GFF528 0.23 -2.0 526,202 + GFF528 0.28 -0.5 526,226 + GFF528 0.30 +0.3 526,252 + GFF528 0.32 +0.0 526,260 - GFF528 0.33 +0.6 526,260 - GFF528 0.33 +0.6 526,270 + GFF528 0.34 +2.1 526,270 - GFF528 0.34 -0.0 526,300 + GFF528 0.36 -0.6 526,308 - GFF528 0.37 +0.1 526,314 - GFF528 0.38 +0.8 526,314 - GFF528 0.38 +0.4 526,314 - GFF528 0.38 +0.9 526,318 + GFF528 0.38 -0.9 526,323 + GFF528 0.38 -0.6 526,342 - GFF528 0.40 -0.9 526,405 - GFF528 0.46 +0.1 526,405 - GFF528 0.46 +0.5 526,406 + GFF528 0.46 -0.2 526,437 - GFF528 0.48 +0.4 526,472 + GFF528 0.51 -2.4 526,472 + GFF528 0.51 +0.4 526,472 + GFF528 0.51 +0.3 526,482 + GFF528 0.52 -1.5 526,495 + GFF528 0.53 -0.1 526,501 + GFF528 0.54 -0.9 526,517 - GFF528 0.55 -1.2 526,519 + GFF528 0.55 +1.0 526,538 - GFF528 0.57 -0.9 526,602 - GFF528 0.63 -0.3 526,642 - GFF528 0.66 +0.8 526,652 - GFF528 0.67 +0.1 526,659 + GFF528 0.67 -1.6 526,667 - GFF528 0.68 +1.0 526,688 + GFF528 0.70 -2.4 526,722 - GFF528 0.73 -0.2 526,831 + GFF528 0.82 -1.6 526,878 - GFF528 0.86 +1.5 526,904 - GFF528 0.89 -1.7 526,938 + -1.2 526,938 + -1.6 526,938 + +0.5 526,938 + +2.5 526,943 + -0.8 526,943 + -1.1 526,946 - +0.6 526,946 - +1.4 526,946 - -1.2 526,946 - -0.1 526,951 - +0.4 526,951 - -1.9 526,951 - +0.9 526,956 + -2.6 526,963 - -2.5 526,964 - +1.2 526,964 - -2.4 526,964 - +0.1 526,966 + +0.0 526,974 - +0.2 527,032 - +0.8 527,036 + +0.0 527,044 - -0.1 527,044 - +0.5 527,106 + GFF529 0.22 -0.1 527,114 - GFF529 0.25 -0.3 527,114 - GFF529 0.25 -0.5 527,171 + GFF529 0.45 +1.1 527,197 + GFF529 0.54 -1.4 527,217 + GFF529 0.60 +0.3 527,217 + GFF529 0.60 +1.2 527,217 + GFF529 0.60 +0.2 527,225 - GFF529 0.63 +0.2 527,230 - GFF529 0.65 -0.1 527,263 + GFF529 0.76 +1.6 527,294 + GFF529 0.87 -0.1 527,300 - GFF529 0.89 -0.3 527,328 - -1.5 527,334 + -0.1 527,353 + -0.6 527,361 - -0.7 527,361 - -1.5 527,377 - +1.4 527,409 + -0.9 527,409 + -1.4 527,427 + +1.2 527,464 - GFF530 0.10 +0.1 527,481 + GFF530 0.12 +0.9 527,488 - GFF530 0.13 -0.3 527,489 - GFF530 0.13 -0.3 527,517 - GFF530 0.16 -0.1 527,526 + GFF530 0.17 -2.5 527,531 + GFF530 0.17 +2.0 527,534 + GFF530 0.18 +0.8 527,534 - GFF530 0.18 +0.7 527,540 - GFF530 0.18 +1.0 527,578 + GFF530 0.22 -0.1 527,578 + GFF530 0.22 -0.9 527,586 - GFF530 0.23 +0.3 527,601 - GFF530 0.25 +0.9 527,613 - GFF530 0.26 -1.7 527,627 + GFF530 0.28 -0.8 527,635 - GFF530 0.29 +0.1 527,693 + GFF530 0.35 -0.7 527,693 + GFF530 0.35 -0.2 527,701 - GFF530 0.36 +0.9 527,723 + GFF530 0.38 +0.9 527,766 + GFF530 0.43 -0.1 527,766 + GFF530 0.43 -0.1 527,768 + GFF530 0.43 -0.7 527,768 + GFF530 0.43 -0.6 527,768 + GFF530 0.43 +0.5 527,768 + GFF530 0.43 +0.6 527,776 - GFF530 0.44 +0.1 527,776 - GFF530 0.44 +1.1 527,776 - GFF530 0.44 -0.4 527,776 - GFF530 0.44 -0.1 527,817 + GFF530 0.48 -0.4 527,825 - GFF530 0.49 +0.2 527,830 - GFF530 0.50 -0.6 527,831 - GFF530 0.50 +0.8 527,859 - GFF530 0.53 +0.5 527,877 + GFF530 0.55 -0.1 527,883 - GFF530 0.55 +0.8 527,883 - GFF530 0.55 -0.7 527,930 + GFF530 0.60 -1.2 527,932 + GFF530 0.61 +0.8 527,938 - GFF530 0.61 +0.4 527,944 + GFF530 0.62 +0.1 527,945 - GFF530 0.62 +0.6 527,965 + GFF530 0.64 +1.0 527,978 - GFF530 0.66 -2.9 528,007 - GFF530 0.69 +0.3 528,007 - GFF530 0.69 -1.1
Or see this region's nucleotide sequence