Strain Fitness in Sphingobium sp. HT1-2 around GFF5206

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,200,419	-				-0.7
5,200,421	+				-0.7
5,200,421	+				+0.8
5,200,429	-				+1.1
5,200,429	-				-1.9
5,200,429	-				+0.6
5,200,460	-				-0.2
5,200,462	-				+1.0
5,200,467	-				-0.1
5,200,482	+				-1.5
5,200,488	+				-0.6
5,200,505	-				+0.3
5,200,516	-		GFF5205	0.11	+0.8
5,200,522	+		GFF5205	0.11	-0.0
5,200,522	+		GFF5205	0.11	-1.1
5,200,522	+		GFF5205	0.11	-0.3
5,200,525	-		GFF5205	0.12	+0.3
5,200,525	-		GFF5205	0.12	-0.1
5,200,525	-		GFF5205	0.12	+0.4
5,200,530	-		GFF5205	0.12	-1.4
5,200,530	-		GFF5205	0.12	-1.0
5,200,530	-		GFF5205	0.12	-0.3
5,200,530	-		GFF5205	0.12	+0.6
5,200,534	+		GFF5205	0.13	+0.6
5,200,542	-		GFF5205	0.14	-0.3
5,200,544	-		GFF5205	0.14	+1.2
5,200,566	-		GFF5205	0.16	-2.0
5,200,566	-		GFF5205	0.16	-0.1
5,200,568	+		GFF5205	0.16	-0.1
5,200,568	+		GFF5205	0.16	+1.6
5,200,574	+		GFF5205	0.17	-0.3
5,200,576	-		GFF5205	0.17	-0.4
5,200,576	-		GFF5205	0.17	-2.2
5,200,576	-		GFF5205	0.17	-0.1
5,200,584	-		GFF5205	0.18	-1.4
5,200,584	-		GFF5205	0.18	+0.7
5,200,584	-		GFF5205	0.18	+1.0
5,200,584	-		GFF5205	0.18	-1.2
5,200,586	-		GFF5205	0.18	+0.9
5,200,586	-		GFF5205	0.18	-0.5
5,200,588	+		GFF5205	0.18	+0.7
5,200,588	+		GFF5205	0.18	-0.6
5,200,588	+		GFF5205	0.18	-1.3
5,200,588	+		GFF5205	0.18	+0.4
5,200,588	+		GFF5205	0.18	-1.1
5,200,588	+		GFF5205	0.18	-0.9
5,200,596	-		GFF5205	0.19	+0.9
5,200,596	-		GFF5205	0.19	-1.2
5,200,596	-		GFF5205	0.19	-0.0
5,200,596	-		GFF5205	0.19	+0.7
5,200,610	+		GFF5205	0.21	-0.9
5,200,614	+		GFF5205	0.21	-0.8
5,200,615	+		GFF5205	0.21	+0.4
5,200,622	-		GFF5205	0.22	+0.4
5,200,623	-		GFF5205	0.22	-0.1
5,200,623	-		GFF5205	0.22	+0.0
5,200,627	-		GFF5205	0.23	+0.0
5,200,631	+		GFF5205	0.23	-2.0
5,200,635	+		GFF5205	0.23	-1.0
5,200,635	+		GFF5205	0.23	-0.2
5,200,635	+		GFF5205	0.23	-2.4
5,200,640	+		GFF5205	0.24	-0.3
5,200,643	-		GFF5205	0.24	+0.7
5,200,643	-		GFF5205	0.24	-1.6
5,200,648	-		GFF5205	0.25	+0.3
5,200,648	-		GFF5205	0.25	-0.0
5,200,649	-		GFF5205	0.25	+1.1
5,200,658	+		GFF5205	0.26	+0.2
5,200,658	+		GFF5205	0.26	+0.9
5,200,663	+		GFF5205	0.26	-0.2
5,200,666	-		GFF5205	0.27	-1.9
5,200,668	+		GFF5205	0.27	-1.9
5,200,668	+		GFF5205	0.27	-0.2
5,200,668	+		GFF5205	0.27	-0.7
5,200,668	+		GFF5205	0.27	-0.9
5,200,668	+		GFF5205	0.27	+0.3
5,200,676	-		GFF5205	0.28	-0.8
5,200,676	-		GFF5205	0.28	+0.0
5,200,676	-		GFF5205	0.28	-0.4
5,200,676	-		GFF5205	0.28	-0.3
5,200,683	+		GFF5205	0.28	+0.6
5,200,693	+		GFF5205	0.30	+0.6
5,200,701	-		GFF5205	0.30	-1.4
5,200,708	-		GFF5205	0.31	-1.4
5,200,719	+		GFF5205	0.32	-0.5
5,200,721	+		GFF5205	0.32	+0.9
5,200,726	+		GFF5205	0.33	-1.4
5,200,729	-		GFF5205	0.33	+0.5
5,200,732	-		GFF5205	0.34	+1.3
5,200,734	-		GFF5205	0.34	-3.5
5,200,734	-		GFF5205	0.34	-2.3
5,200,742	-		GFF5205	0.35	+0.2
5,200,746	-		GFF5205	0.35	-1.3
5,200,758	+		GFF5205	0.36	+1.0
5,200,766	-		GFF5205	0.37	-0.0
5,200,766	-		GFF5205	0.37	-0.2
5,200,768	+		GFF5205	0.37	+1.6
5,200,768	+		GFF5205	0.37	+0.4
5,200,768	+		GFF5205	0.37	-1.1
5,200,768	+		GFF5205	0.37	-0.3
5,200,776	-		GFF5205	0.38	+0.4
5,200,776	-		GFF5205	0.38	-0.2
5,200,776	-		GFF5205	0.38	+0.7
5,200,776	-		GFF5205	0.38	-3.3
5,200,776	-		GFF5205	0.38	-0.6
5,200,778	+		GFF5205	0.39	-0.0
5,200,778	+		GFF5205	0.39	-0.8
5,200,778	+		GFF5205	0.39	+0.0
5,200,778	+		GFF5205	0.39	+0.2
5,200,786	-		GFF5205	0.39	+0.1
5,200,788	+		GFF5205	0.40	+0.2
5,200,791	-		GFF5205	0.40	+0.7
5,200,792	+		GFF5205	0.40	+0.5
5,200,810	+		GFF5205	0.42	-0.2
5,200,810	+		GFF5205	0.42	-1.0
5,200,810	+		GFF5205	0.42	-0.7
5,200,815	+		GFF5205	0.42	-0.3
5,200,815	+		GFF5205	0.42	+0.2
5,200,815	+		GFF5205	0.42	+0.6
5,200,815	+		GFF5205	0.42	-0.1
5,200,818	-		GFF5205	0.43	-1.2
5,200,819	-		GFF5205	0.43	+0.1
5,200,823	-		GFF5205	0.43	+0.6
5,200,826	+		GFF5205	0.44	-0.3
5,200,826	+		GFF5205	0.44	+0.6
5,200,840	+		GFF5205	0.45	-0.8
5,200,859	+		GFF5205	0.47	+0.2
5,200,859	+		GFF5205	0.47	+0.9
5,200,866	+		GFF5205	0.48	-0.3
5,200,867	-		GFF5205	0.48	-1.9
5,200,867	-		GFF5205	0.48	-1.7
5,200,884	-		GFF5205	0.50	+0.7
5,200,970	+		GFF5205	0.59	-2.1
5,201,008	+		GFF5205	0.63	+0.3
5,201,028	+		GFF5205	0.65	+0.9
5,201,028	+		GFF5205	0.65	-0.6
5,201,032	+		GFF5205	0.65	+0.9
5,201,042	+		GFF5205	0.66	+0.4
5,201,042	+		GFF5205	0.66	-0.5
5,201,055	+		GFF5205	0.68	+0.8
5,201,055	+		GFF5205	0.68	+1.4
5,201,056	+		GFF5205	0.68	+0.4
5,201,058	-		GFF5205	0.68	-0.7
5,201,061	+		GFF5205	0.68	+0.3
5,201,063	-		GFF5205	0.69	+0.7
5,201,069	-		GFF5205	0.69	+0.3
5,201,069	-		GFF5205	0.69	+0.1
5,201,071	+		GFF5205	0.70	-0.2
5,201,071	-		GFF5205	0.70	-0.8
5,201,079	-		GFF5205	0.70	-1.9
5,201,079	-		GFF5205	0.70	-0.6
5,201,093	+		GFF5205	0.72	-0.1
5,201,093	+		GFF5205	0.72	-2.4
5,201,097	+		GFF5205	0.72	-0.4
5,201,097	+		GFF5205	0.72	-2.7
5,201,098	+		GFF5205	0.72	-0.3
5,201,103	+		GFF5205	0.73	+0.1
5,201,105	-		GFF5205	0.73	+0.8
5,201,105	-		GFF5205	0.73	+1.3
5,201,105	-		GFF5205	0.73	+0.1
5,201,110	-		GFF5205	0.74	-1.3
5,201,111	+		GFF5205	0.74	+0.3
5,201,125	+		GFF5205	0.75	-1.9
5,201,125	+		GFF5205	0.75	+0.5
5,201,130	-		GFF5205	0.76	-0.7
5,201,139	+		GFF5205	0.77	-1.1
5,201,142	-		GFF5205	0.77	-0.2
5,201,142	-		GFF5205	0.77	-1.1
5,201,144	+		GFF5205	0.77	+0.7
5,201,144	+		GFF5205	0.77	-1.6
5,201,147	-		GFF5205	0.78	+1.1
5,201,147	-		GFF5205	0.78	+0.9
5,201,152	-		GFF5205	0.78	-0.7
5,201,152	-		GFF5205	0.78	-0.3
5,201,152	-		GFF5205	0.78	-0.8
5,201,171	+		GFF5205	0.80	-0.2
5,201,175	+		GFF5205	0.81	+1.4
5,201,179	-		GFF5205	0.81	-0.3
5,201,179	-		GFF5205	0.81	+0.2
5,201,183	-		GFF5205	0.81	+1.7
5,201,185	-		GFF5205	0.82	+0.6
5,201,198	-		GFF5205	0.83	+0.1
5,201,215	-		GFF5205	0.85	-0.5
5,201,384	+				-0.2
5,201,390	+				-2.5
5,201,398	-				+0.1
5,201,400	+				+0.3
5,201,400	+				-1.5
5,201,400	+				+0.6
5,201,400	+				-0.2
5,201,400	+				+1.5
5,201,408	-				+0.1
5,201,408	-				+0.1
5,201,516	-		GFF5206	0.18	-0.9
5,201,535	-		GFF5206	0.21	-1.8
5,201,560	+		GFF5206	0.24	-0.8
5,201,567	+		GFF5206	0.25	-0.1
5,201,591	-		GFF5206	0.29	+0.1
5,201,596	-		GFF5206	0.30	+0.4
5,201,611	-		GFF5206	0.32	-0.6
5,201,624	-		GFF5206	0.34	+0.7
5,201,631	-		GFF5206	0.35	-0.0
5,201,640	+		GFF5206	0.36	+1.4
5,201,640	+		GFF5206	0.36	-0.5
5,201,640	+		GFF5206	0.36	+0.7
5,201,640	+		GFF5206	0.36	-0.2
5,201,640	+		GFF5206	0.36	-0.0
5,201,640	+		GFF5206	0.36	+1.3
5,201,640	+		GFF5206	0.36	-0.2
5,201,640	+		GFF5206	0.36	-0.7
5,201,640	+		GFF5206	0.36	+0.0
5,201,640	+		GFF5206	0.36	-0.2
5,201,640	+		GFF5206	0.36	+0.5
5,201,640	+		GFF5206	0.36	+0.4
5,201,648	-		GFF5206	0.37	+0.3
5,201,648	-		GFF5206	0.37	+2.0
5,201,648	-		GFF5206	0.37	-0.9
5,201,648	-		GFF5206	0.37	+1.1
5,201,648	-		GFF5206	0.37	-0.4
5,201,648	-		GFF5206	0.37	-1.4
5,201,648	-		GFF5206	0.37	+0.3
5,201,669	-		GFF5206	0.41	-0.5
5,201,677	+		GFF5206	0.42	+1.3
5,201,678	+		GFF5206	0.42	-1.1
5,201,701	+		GFF5206	0.45	-1.7
5,201,704	-		GFF5206	0.46	+0.7
5,201,709	-		GFF5206	0.47	-2.6
5,201,722	+		GFF5206	0.48	+0.3
5,201,722	+		GFF5206	0.48	-1.1
5,201,722	+		GFF5206	0.48	+0.1
5,201,722	+		GFF5206	0.48	-1.1
5,201,722	+		GFF5206	0.48	-0.1
5,201,732	+		GFF5206	0.50	-0.3
5,201,768	+		GFF5206	0.55	-0.4
5,201,768	+		GFF5206	0.55	-0.8
5,201,768	+		GFF5206	0.55	+1.0
5,201,776	-		GFF5206	0.56	-1.4
5,201,776	-		GFF5206	0.56	+0.3
5,201,799	+		GFF5206	0.60	+0.7
5,201,868	-		GFF5206	0.70	-0.8
5,201,869	-		GFF5206	0.70	-0.2
5,201,869	-		GFF5206	0.70	+0.6
5,201,870	+		GFF5206	0.70	-1.0
5,201,880	-		GFF5206	0.72	-2.1
5,201,892	+		GFF5206	0.74	-0.7
5,201,915	-		GFF5206	0.77	-1.9
5,201,928	+		GFF5206	0.79	-0.3
5,202,017	-				-0.9
5,202,025	-				+0.6
5,202,028	+				-0.8
5,202,028	+				+0.7
5,202,028	+				+1.1
5,202,028	+				+1.0
5,202,028	+				-1.1
5,202,028	+				-1.5
5,202,028	+				-0.3
5,202,028	+				+1.1
5,202,028	+				+0.7
5,202,028	+				-0.6
5,202,041	+				-0.4
5,202,041	+				-0.4
5,202,041	+				+1.5
5,202,041	+				+1.2
5,202,041	+				-0.7
5,202,041	+				-0.1
5,202,041	+				-0.8
5,202,041	+				+0.0
5,202,041	+				-0.3
5,202,041	+				-0.2
5,202,041	-				+0.2
5,202,049	-				-0.1
5,202,049	-				+0.5
5,202,049	-				+0.1
5,202,049	-				+1.6
5,202,049	-				+0.4
5,202,049	-				+0.1
5,202,049	-				+0.1
5,202,049	-				+0.1
5,202,049	-				+0.6
5,202,049	-				+0.8
5,202,053	+				+2.0
5,202,061	-				-1.5
5,202,117	-				-0.2
5,202,175	-				+0.3
5,202,277	+				+0.3
5,202,284	+				+1.4
5,202,306	+				-1.0
5,202,331	-				+0.1
5,202,426	+		GFF5207	0.11	-0.2
5,202,426	+		GFF5207	0.11	+0.6
5,202,426	+		GFF5207	0.11	-1.8
5,202,426	+		GFF5207	0.11	+0.3
5,202,426	+		GFF5207	0.11	-1.4
5,202,426	+		GFF5207	0.11	+1.0
5,202,426	+		GFF5207	0.11	-0.3
5,202,426	+		GFF5207	0.11	+0.2
5,202,426	+		GFF5207	0.11	-1.0
5,202,426	+		GFF5207	0.11	-0.3
5,202,426	+		GFF5207	0.11	-2.0
5,202,426	+		GFF5207	0.11	+1.0
5,202,434	-		GFF5207	0.11	+0.6
5,202,434	-		GFF5207	0.11	-0.9
5,202,434	-		GFF5207	0.11	+1.1
5,202,434	-		GFF5207	0.11	+0.3
5,202,434	-		GFF5207	0.11	+1.1
5,202,434	-		GFF5207	0.11	-2.3
5,202,434	-		GFF5207	0.11	-1.6
5,202,434	-		GFF5207	0.11	+0.6
5,202,434	-		GFF5207	0.11	+0.3
5,202,475	-		GFF5207	0.13	+1.1
5,202,535	+		GFF5207	0.15	-0.5
5,202,535	+		GFF5207	0.15	+0.3
5,202,535	+		GFF5207	0.15	+1.2
5,202,535	+		GFF5207	0.15	-1.0
5,202,535	+		GFF5207	0.15	+0.3
5,202,543	-		GFF5207	0.16	-0.2
5,202,543	-		GFF5207	0.16	-0.1
5,202,543	-		GFF5207	0.16	-0.1
5,202,543	-		GFF5207	0.16	-0.7
5,202,543	-		GFF5207	0.16	+0.5
5,202,543	-		GFF5207	0.16	-1.0
5,202,550	+		GFF5207	0.16	-0.8
5,202,574	+		GFF5207	0.17	-1.4
5,202,574	+		GFF5207	0.17	+0.8
5,202,581	-		GFF5207	0.17	-0.0
5,202,582	-		GFF5207	0.17	+0.9
5,202,597	-		GFF5207	0.18	+0.2
5,202,602	-		GFF5207	0.18	+0.3
5,202,602	-		GFF5207	0.18	-0.2
5,202,683	+		GFF5207	0.21	+0.3
5,202,693	+		GFF5207	0.22	-0.8
5,202,736	-		GFF5207	0.24	+0.8
5,202,737	-		GFF5207	0.24	-1.1
5,202,826	+		GFF5207	0.28	+1.6
5,202,834	-		GFF5207	0.28	-1.7
5,202,834	-		GFF5207	0.28	+0.9
5,202,834	-		GFF5207	0.28	-0.3
5,202,917	+		GFF5207	0.31	+0.9
5,202,928	+		GFF5207	0.32	-0.3
5,202,930	+		GFF5207	0.32	-0.3
5,202,961	-		GFF5207	0.33	-0.3
5,202,975	+		GFF5207	0.34	+0.4
5,202,977	+		GFF5207	0.34	-0.2
5,202,977	+		GFF5207	0.34	+0.2
5,202,977	+		GFF5207	0.34	-0.3
5,202,977	+		GFF5207	0.34	+0.1
5,202,977	+		GFF5207	0.34	+0.7
5,202,977	+		GFF5207	0.34	+1.4
5,202,977	+		GFF5207	0.34	-0.2
5,202,977	+		GFF5207	0.34	+0.6
5,202,977	+		GFF5207	0.34	+0.2
5,202,977	+		GFF5207	0.34	-0.1
5,202,977	+		GFF5207	0.34	-0.2
5,202,977	+		GFF5207	0.34	-0.2
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