Strain Fitness in Sphingobium sp. HT1-2 around GFF5108

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,095,283	+		GFF5107	0.43	-0.9
5,095,284	-		GFF5107	0.43	+0.3
5,095,284	-		GFF5107	0.43	-0.1
5,095,293	+		GFF5107	0.44	-0.9
5,095,293	+		GFF5107	0.44	+0.4
5,095,293	+		GFF5107	0.44	-0.8
5,095,293	+		GFF5107	0.44	-0.5
5,095,293	+		GFF5107	0.44	+0.6
5,095,293	+		GFF5107	0.44	-2.4
5,095,293	+		GFF5107	0.44	-1.2
5,095,294	-		GFF5107	0.44	+0.2
5,095,301	-		GFF5107	0.44	+0.4
5,095,301	-		GFF5107	0.44	+0.5
5,095,301	-		GFF5107	0.44	-0.0
5,095,301	-		GFF5107	0.44	-0.4
5,095,301	-		GFF5107	0.44	-0.3
5,095,301	-		GFF5107	0.44	-2.1
5,095,301	-		GFF5107	0.44	+0.2
5,095,301	-		GFF5107	0.44	+1.6
5,095,301	-		GFF5107	0.44	+1.4
5,095,301	-		GFF5107	0.44	-0.5
5,095,303	+		GFF5107	0.45	+0.1
5,095,332	-		GFF5107	0.47	-2.5
5,095,341	+		GFF5107	0.47	-2.6
5,095,341	+		GFF5107	0.47	-0.5
5,095,341	+		GFF5107	0.47	-0.6
5,095,349	-		GFF5107	0.48	+0.6
5,095,349	-		GFF5107	0.48	-0.4
5,095,372	+		GFF5107	0.49	+0.9
5,095,372	+		GFF5107	0.49	-2.7
5,095,380	-		GFF5107	0.50	-0.5
5,095,389	+		GFF5107	0.50	+0.2
5,095,389	+		GFF5107	0.50	-0.6
5,095,389	+		GFF5107	0.50	-0.9
5,095,389	+		GFF5107	0.50	-2.3
5,095,389	+		GFF5107	0.50	-2.2
5,095,389	+		GFF5107	0.50	-0.5
5,095,394	+		GFF5107	0.51	+1.3
5,095,394	+		GFF5107	0.51	-1.7
5,095,397	-		GFF5107	0.51	-0.4
5,095,397	-		GFF5107	0.51	+0.2
5,095,397	-		GFF5107	0.51	-0.6
5,095,397	-		GFF5107	0.51	+0.2
5,095,397	-		GFF5107	0.51	-0.2
5,095,397	-		GFF5107	0.51	-0.5
5,095,397	-		GFF5107	0.51	-1.4
5,095,397	-		GFF5107	0.51	-0.8
5,095,399	+		GFF5107	0.51	+0.4
5,095,407	-		GFF5107	0.52	+0.3
5,095,417	+		GFF5107	0.52	-0.8
5,095,417	+		GFF5107	0.52	-1.2
5,095,422	+		GFF5107	0.53	+0.3
5,095,422	+		GFF5107	0.53	-0.8
5,095,430	-		GFF5107	0.53	-0.7
5,095,430	-		GFF5107	0.53	-1.9
5,095,430	-		GFF5107	0.53	-1.8
5,095,432	+		GFF5107	0.53	-1.3
5,095,438	-		GFF5107	0.54	-3.2
5,095,446	+		GFF5107	0.54	-1.6
5,095,470	+		GFF5107	0.56	-1.1
5,095,471	+		GFF5107	0.56	-0.4
5,095,471	+		GFF5107	0.56	-2.9
5,095,471	+		GFF5107	0.56	-0.9
5,095,471	+		GFF5107	0.56	-2.1
5,095,471	+		GFF5107	0.56	-0.0
5,095,471	+		GFF5107	0.56	-0.6
5,095,471	+		GFF5107	0.56	-2.2
5,095,471	+		GFF5107	0.56	-1.9
5,095,472	+		GFF5107	0.56	-0.0
5,095,479	-		GFF5107	0.56	-0.7
5,095,479	-		GFF5107	0.56	-0.7
5,095,479	-		GFF5107	0.56	-0.5
5,095,479	-		GFF5107	0.56	-1.7
5,095,479	-		GFF5107	0.56	+0.2
5,095,479	-		GFF5107	0.56	-1.0
5,095,479	-		GFF5107	0.56	+0.8
5,095,479	-		GFF5107	0.56	-0.2
5,095,479	-		GFF5107	0.56	-0.6
5,095,479	-		GFF5107	0.56	-1.7
5,095,486	-		GFF5107	0.57	+0.1
5,095,499	+		GFF5107	0.58	-2.3
5,095,499	-		GFF5107	0.58	-0.5
5,095,501	+		GFF5107	0.58	-0.5
5,095,501	+		GFF5107	0.58	-0.2
5,095,501	+		GFF5107	0.58	-1.7
5,095,501	+		GFF5107	0.58	-1.5
5,095,517	-		GFF5107	0.59	-0.7
5,095,519	+		GFF5107	0.59	-0.4
5,095,527	-		GFF5107	0.60	-0.2
5,095,527	-		GFF5107	0.60	-0.6
5,095,529	+		GFF5107	0.60	-0.0
5,095,529	+		GFF5107	0.60	-0.2
5,095,534	+		GFF5107	0.60	-0.5
5,095,545	+		GFF5107	0.61	-0.4
5,095,555	+		GFF5107	0.61	+0.5
5,095,555	+		GFF5107	0.61	-0.8
5,095,564	-		GFF5107	0.62	-0.4
5,095,589	+		GFF5107	0.64	-0.4
5,095,605	+		GFF5107	0.65	-3.7
5,095,609	-		GFF5107	0.65	-0.7
5,095,611	-		GFF5107	0.65	+0.7
5,095,623	-		GFF5107	0.66	+0.1
5,095,628	+		GFF5107	0.66	+1.2
5,095,638	+		GFF5107	0.67	-0.4
5,095,638	+		GFF5107	0.67	-1.4
5,095,638	+		GFF5107	0.67	-1.8
5,095,638	+		GFF5107	0.67	-0.9
5,095,646	-		GFF5107	0.68	-1.5
5,095,646	-		GFF5107	0.68	+0.3
5,095,646	-		GFF5107	0.68	+0.5
5,095,659	+		GFF5107	0.68	-2.2
5,095,675	+		GFF5107	0.69	+0.2
5,095,693	+		GFF5107	0.71	+0.6
5,095,693	+		GFF5107	0.71	+0.2
5,095,696	-		GFF5107	0.71	-1.2
5,095,704	+		GFF5107	0.71	-0.7
5,095,706	+		GFF5107	0.72	+0.8
5,095,706	+		GFF5107	0.72	+0.3
5,095,706	+		GFF5107	0.72	-1.5
5,095,706	+		GFF5107	0.72	+0.2
5,095,714	-		GFF5107	0.72	-0.9
5,095,723	+		GFF5107	0.73	+0.3
5,095,725	+		GFF5107	0.73	-0.6
5,095,725	+		GFF5107	0.73	-1.2
5,095,725	+		GFF5107	0.73	-0.9
5,095,725	+		GFF5107	0.73	-1.4
5,095,725	+		GFF5107	0.73	-2.7
5,095,725	+		GFF5107	0.73	+0.6
5,095,733	-		GFF5107	0.73	-0.1
5,095,733	-		GFF5107	0.73	-0.1
5,095,735	+		GFF5107	0.73	+0.2
5,095,740	+		GFF5107	0.74	+0.2
5,095,740	+		GFF5107	0.74	-1.6
5,095,743	-		GFF5107	0.74	-0.4
5,095,743	-		GFF5107	0.74	-0.6
5,095,748	-		GFF5107	0.74	-0.8
5,095,748	-		GFF5107	0.74	-1.5
5,095,748	-		GFF5107	0.74	-0.4
5,095,748	-		GFF5107	0.74	-0.7
5,095,748	-		GFF5107	0.74	-1.1
5,095,748	-		GFF5107	0.74	-1.6
5,095,793	-		GFF5107	0.77	+0.1
5,095,860	-		GFF5107	0.82	-0.4
5,095,919	+		GFF5107	0.86	-1.2
5,095,925	+		GFF5107	0.86	-1.7
5,095,951	+		GFF5107	0.88	-1.2
5,095,951	+		GFF5107	0.88	-2.9
5,095,965	+		GFF5107	0.89	-0.9
5,095,965	+		GFF5107	0.89	-0.4
5,095,965	+		GFF5107	0.89	-0.4
5,095,965	+		GFF5107	0.89	+0.0
5,095,965	+		GFF5107	0.89	+0.4
5,095,965	+		GFF5107	0.89	-2.1
5,095,965	+		GFF5107	0.89	-0.6
5,095,969	+		GFF5107	0.89	-0.4
5,095,973	-		GFF5107	0.89	-0.9
5,095,973	-		GFF5107	0.89	-1.1
5,095,973	-		GFF5107	0.89	-0.8
5,095,973	-		GFF5107	0.89	+0.1
5,095,973	-		GFF5107	0.89	-0.7
5,095,973	-		GFF5107	0.89	+0.1
5,095,973	-		GFF5107	0.89	+0.2
5,095,973	-		GFF5107	0.89	-0.0
5,095,973	-		GFF5107	0.89	-0.5
5,095,977	-		GFF5107	0.90	-0.4
5,095,979	+		GFF5107	0.90	-0.6
5,095,982	-				-0.8
5,095,997	-				-0.4
5,096,002	-				-2.2
5,096,027	+				-2.5
5,096,034	+				+0.4
5,096,056	+				-2.5
5,096,073	+				+0.2
5,096,073	+				+0.4
5,096,094	+				-1.4
5,096,102	-				-0.2
5,096,133	-				-0.7
5,096,165	+				-1.4
5,096,173	-				-0.9
5,096,175	+				+0.8
5,096,221	+				+0.1
5,096,229	-				-0.5
5,096,229	-				-0.7
5,096,229	-				+0.5
5,096,254	+				+0.2
5,096,360	+		GFF5108	0.12	-0.8
5,096,360	+		GFF5108	0.12	-1.3
5,096,368	+		GFF5108	0.14	-0.3
5,096,368	-		GFF5108	0.14	-0.7
5,096,376	-		GFF5108	0.15	-3.7
5,096,382	+		GFF5108	0.16	-1.5
5,096,390	-		GFF5108	0.17	+0.3
5,096,390	-		GFF5108	0.17	-2.1
5,096,405	-		GFF5108	0.19	-0.7
5,096,417	+		GFF5108	0.21	-0.8
5,096,417	+		GFF5108	0.21	-0.1
5,096,417	+		GFF5108	0.21	+0.1
5,096,417	+		GFF5108	0.21	-1.9
5,096,417	+		GFF5108	0.21	-0.9
5,096,419	-		GFF5108	0.22	-1.2
5,096,423	+		GFF5108	0.22	-1.1
5,096,423	+		GFF5108	0.22	+0.3
5,096,424	+		GFF5108	0.22	-0.8
5,096,431	-		GFF5108	0.23	-0.7
5,096,431	-		GFF5108	0.23	-1.7
5,096,447	+		GFF5108	0.26	-1.6
5,096,448	-		GFF5108	0.26	-0.9
5,096,455	-		GFF5108	0.27	-0.2
5,096,506	+		GFF5108	0.35	-0.4
5,096,506	+		GFF5108	0.35	-0.1
5,096,506	+		GFF5108	0.35	-1.6
5,096,506	+		GFF5108	0.35	-0.4
5,096,506	+		GFF5108	0.35	-0.9
5,096,506	+		GFF5108	0.35	-0.0
5,096,506	+		GFF5108	0.35	-1.4
5,096,506	+		GFF5108	0.35	-1.6
5,096,511	+		GFF5108	0.36	-1.3
5,096,514	-		GFF5108	0.36	-0.9
5,096,514	-		GFF5108	0.36	-0.9
5,096,514	-		GFF5108	0.36	-0.5
5,096,514	-		GFF5108	0.36	-0.2
5,096,526	-		GFF5108	0.38	-1.0
5,096,558	+		GFF5108	0.43	-1.7
5,096,576	+		GFF5108	0.46	-3.3
5,096,576	+		GFF5108	0.46	-0.0
5,096,592	+		GFF5108	0.49	-1.2
5,096,592	+		GFF5108	0.49	+0.4
5,096,592	+		GFF5108	0.49	-0.8
5,096,592	+		GFF5108	0.49	-2.1
5,096,600	-		GFF5108	0.50	-1.4
5,096,600	-		GFF5108	0.50	-2.3
5,096,600	-		GFF5108	0.50	-2.0
5,096,636	+		GFF5108	0.56	-1.1
5,096,636	+		GFF5108	0.56	-0.6
5,096,637	-		GFF5108	0.56	-2.2
5,096,640	+		GFF5108	0.56	+0.5
5,096,644	-		GFF5108	0.57	-2.3
5,096,651	+		GFF5108	0.58	+0.8
5,096,663	+		GFF5108	0.60	+0.1
5,096,676	+		GFF5108	0.62	-1.3
5,096,687	+		GFF5108	0.64	+0.1
5,096,697	+		GFF5108	0.65	-2.1
5,096,703	-		GFF5108	0.66	-1.1
5,096,717	+		GFF5108	0.68	-1.5
5,096,726	-		GFF5108	0.70	-0.2
5,096,738	-		GFF5108	0.72	-2.1
5,096,780	+		GFF5108	0.78	-0.1
5,096,786	+		GFF5108	0.79	-0.9
5,096,786	+		GFF5108	0.79	+0.7
5,096,786	+		GFF5108	0.79	+0.2
5,096,786	+		GFF5108	0.79	-0.8
5,096,786	+		GFF5108	0.79	-1.4
5,096,786	+		GFF5108	0.79	-0.4
5,096,786	+		GFF5108	0.79	-0.9
5,096,794	-		GFF5108	0.81	-1.6
5,096,796	+		GFF5108	0.81	-0.2
5,096,796	+		GFF5108	0.81	+1.1
5,096,796	+		GFF5108	0.81	-1.5
5,096,796	+		GFF5108	0.81	-0.5
5,096,796	+		GFF5108	0.81	-0.6
5,096,796	+		GFF5108	0.81	-0.4
5,096,796	+		GFF5108	0.81	-0.4
5,096,796	+		GFF5108	0.81	-0.9
5,096,796	+		GFF5108	0.81	-0.3
5,096,796	+		GFF5108	0.81	-1.4
5,096,796	+		GFF5108	0.81	+0.1
5,096,804	-		GFF5108	0.82	-0.7
5,096,804	-		GFF5108	0.82	+0.3
5,096,804	-		GFF5108	0.82	+0.3
5,096,804	-		GFF5108	0.82	-1.9
5,096,804	-		GFF5108	0.82	-2.4
5,096,804	-		GFF5108	0.82	-1.7
5,096,852	+		GFF5108	0.90	-0.9
5,096,852	+		GFF5108	0.90	+0.4
5,096,852	+		GFF5108	0.90	-1.2
5,096,852	+		GFF5108	0.90	-0.7
5,096,852	+		GFF5108	0.90	-2.2
5,096,852	+		GFF5108	0.90	+0.1
5,096,860	-				-0.8
5,096,860	-				+0.2
5,096,860	-				-1.3
5,096,860	-				-1.8
5,096,860	-				+0.3
5,096,860	-				-1.7
5,096,871	+				-1.7
5,096,941	+				-0.8
5,096,941	+				-1.0
5,096,951	+				-0.9
5,096,951	+				-0.6
5,096,951	+				-0.3
5,096,951	+				-1.0
5,096,951	+				-0.4
5,096,951	+				-0.9
5,096,951	+				+0.5
5,096,951	+				-0.7
5,096,956	+				-0.4
5,096,959	-				+0.4
5,097,012	+				+0.2
5,097,028	+				+0.1
5,097,038	+				+0.4
5,097,071	-				-0.2
5,097,123	+				-0.8
5,097,176	+				-0.7
5,097,188	-				+0.1
5,097,188	-				-0.0
5,097,212	+		GFF5109	0.10	-0.2
5,097,212	+		GFF5109	0.10	-0.9
5,097,241	-		GFF5109	0.11	-0.4
5,097,255	-		GFF5109	0.12	+0.4
5,097,256	+		GFF5109	0.12	-0.2
5,097,256	+		GFF5109	0.12	-1.0
5,097,256	+		GFF5109	0.12	-1.3
5,097,256	+		GFF5109	0.12	-2.1
5,097,256	+		GFF5109	0.12	-2.2
5,097,256	+		GFF5109	0.12	+0.2
5,097,264	-		GFF5109	0.12	-2.9
5,097,264	-		GFF5109	0.12	-0.2
5,097,264	-		GFF5109	0.12	-0.9
5,097,279	-		GFF5109	0.13	-1.9
5,097,281	-		GFF5109	0.13	+0.1
5,097,308	+		GFF5109	0.14	+0.2
5,097,320	+		GFF5109	0.15	-0.7
5,097,328	-		GFF5109	0.15	+0.6
5,097,328	-		GFF5109	0.15	-0.4
5,097,328	-		GFF5109	0.15	-3.0
5,097,335	-		GFF5109	0.16	-0.2
5,097,343	-		GFF5109	0.16	-1.6
5,097,357	-		GFF5109	0.17	-0.5
5,097,358	+		GFF5109	0.17	-0.1
5,097,382	+		GFF5109	0.18	-1.2
5,097,383	-		GFF5109	0.18	-0.5
5,097,383	-		GFF5109	0.18	-0.4
5,097,383	-		GFF5109	0.18	-0.4
5,097,385	+		GFF5109	0.18	-0.5
5,097,385	+		GFF5109	0.18	+0.6
5,097,398	+		GFF5109	0.18	+0.4
5,097,403	+		GFF5109	0.19	-2.1
5,097,441	+		GFF5109	0.20	-0.8
5,097,441	+		GFF5109	0.20	+0.0
5,097,441	+		GFF5109	0.20	+0.1
5,097,449	-		GFF5109	0.21	-0.4
5,097,449	-		GFF5109	0.21	-1.1
5,097,449	-		GFF5109	0.21	-1.2
5,097,449	-		GFF5109	0.21	-0.3
5,097,467	+		GFF5109	0.21	-1.6
5,097,474	+		GFF5109	0.22	-1.3
5,097,475	-		GFF5109	0.22	-1.6
5,097,482	-		GFF5109	0.22	-1.9
5,097,482	-		GFF5109	0.22	-0.2
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