Strain Fitness in Sphingobium sp. HT1-2 around GFF5054

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,048,520	+		GFF5052	0.42	-0.2
5,048,520	+		GFF5052	0.42	-1.0
5,048,525	+		GFF5052	0.43	-2.5
5,048,525	+		GFF5052	0.43	-0.9
5,048,525	+		GFF5052	0.43	-0.0
5,048,525	+		GFF5052	0.43	-0.8
5,048,525	+		GFF5052	0.43	+0.5
5,048,528	-		GFF5052	0.43	-0.2
5,048,528	-		GFF5052	0.43	-0.5
5,048,533	-		GFF5052	0.44	+0.7
5,048,533	-		GFF5052	0.44	-0.2
5,048,533	-		GFF5052	0.44	-1.1
5,048,533	-		GFF5052	0.44	-1.0
5,048,538	-		GFF5052	0.44	-1.9
5,048,561	-		GFF5052	0.47	+1.4
5,048,563	+		GFF5052	0.47	-1.9
5,048,579	+		GFF5052	0.49	-0.3
5,048,586	+		GFF5052	0.49	-1.2
5,048,630	-		GFF5052	0.54	-1.7
5,048,630	-		GFF5052	0.54	-0.4
5,048,630	-		GFF5052	0.54	+1.0
5,048,652	+		GFF5052	0.57	-1.0
5,048,652	+		GFF5052	0.57	-2.3
5,048,652	+		GFF5052	0.57	+0.3
5,048,652	-		GFF5052	0.57	+0.5
5,048,652	-		GFF5052	0.57	+0.2
5,048,660	-		GFF5052	0.58	-2.1
5,048,674	-		GFF5052	0.59	-1.2
5,048,682	+		GFF5052	0.60	+0.5
5,048,687	+		GFF5052	0.61	+0.4
5,048,695	-		GFF5052	0.62	+0.1
5,048,695	-		GFF5052	0.62	+0.4
5,048,695	-		GFF5052	0.62	-0.4
5,048,719	-		GFF5052	0.64	-0.0
5,048,729	+		GFF5052	0.65	+1.7
5,048,729	+		GFF5052	0.65	+0.9
5,048,729	+		GFF5052	0.65	-0.5
5,048,729	+		GFF5052	0.65	+0.4
5,048,729	+		GFF5052	0.65	-1.4
5,048,729	+		GFF5052	0.65	+1.2
5,048,737	-		GFF5052	0.66	-0.0
5,048,737	-		GFF5052	0.66	-0.1
5,048,737	-		GFF5052	0.66	-0.1
5,048,737	-		GFF5052	0.66	-2.0
5,048,737	-		GFF5052	0.66	+1.0
5,048,737	-		GFF5052	0.66	-0.1
5,048,737	-		GFF5052	0.66	-0.2
5,048,737	-		GFF5052	0.66	+0.5
5,048,742	-		GFF5052	0.67	+1.0
5,048,761	+		GFF5052	0.69	-0.6
5,048,769	-		GFF5052	0.70	-1.9
5,048,769	-		GFF5052	0.70	-0.8
5,048,769	-		GFF5052	0.70	+0.2
5,048,776	+		GFF5052	0.71	-1.1
5,048,779	-		GFF5052	0.71	-2.3
5,048,779	-		GFF5052	0.71	+0.1
5,048,790	+		GFF5052	0.72	-1.5
5,048,828	+		GFF5052	0.76	-0.3
5,048,828	+		GFF5052	0.76	-0.4
5,048,828	+		GFF5052	0.76	-0.9
5,048,828	+		GFF5052	0.76	-0.3
5,048,836	-		GFF5052	0.77	-2.2
5,048,836	-		GFF5052	0.77	+0.6
5,048,836	-		GFF5052	0.77	-0.6
5,048,845	+		GFF5052	0.78	-3.2
5,048,852	-		GFF5052	0.79	+0.2
5,048,868	-		GFF5052	0.81	-1.8
5,048,875	+		GFF5052	0.82	-0.5
5,048,893	+		GFF5052	0.84	-1.9
5,048,921	-		GFF5052	0.87	-0.1
5,048,944	+		GFF5052	0.89	+0.5
5,048,952	-				-0.1
5,048,963	+				+0.7
5,048,963	+				-2.3
5,048,963	+				-2.7
5,048,963	+				-2.0
5,048,963	+				-1.7
5,048,963	+				+0.1
5,048,963	+				-0.3
5,048,963	+				-0.5
5,048,963	+				-0.4
5,048,963	+				-0.7
5,048,963	+				-0.8
5,048,963	+				-0.6
5,048,963	+				-0.4
5,048,963	+				-1.6
5,048,963	+				-0.3
5,048,963	+				+0.2
5,048,963	+				-1.4
5,048,963	+				+0.4
5,048,963	+				-1.1
5,048,963	+				-3.1
5,048,963	+				-1.9
5,048,963	+				+0.7
5,048,963	+				-0.5
5,048,963	+				-0.6
5,048,963	+				+0.5
5,048,963	+				-0.6
5,048,963	+				+0.4
5,048,971	-				-0.4
5,048,971	-				+0.7
5,048,971	-				-1.6
5,048,971	-				-2.0
5,048,971	-				-2.0
5,048,971	-				-1.5
5,048,971	-				-0.1
5,048,971	-				-1.4
5,048,971	-				-0.2
5,048,971	-				-1.0
5,048,971	-				-0.6
5,048,971	-				+0.6
5,048,971	-				-1.3
5,048,971	-				+0.3
5,048,971	-				-0.3
5,048,971	-				+0.3
5,048,971	-				-1.3
5,048,971	-				-0.1
5,048,971	-				+0.3
5,048,971	-				+0.8
5,048,971	-				-1.9
5,048,971	-				-0.7
5,048,971	-				+0.3
5,048,971	-				-0.1
5,048,971	-				-0.4
5,048,971	-				-1.5
5,048,971	-				-0.4
5,048,977	+				-0.4
5,048,982	+				-0.4
5,048,982	+				-2.2
5,048,990	-				-1.0
5,049,003	-				-0.3
5,049,009	-				-2.0
5,049,052	+				+0.7
5,049,053	+				+0.3
5,049,053	+				-0.1
5,049,053	+				-1.9
5,049,053	+				-0.3
5,049,053	+				+0.6
5,049,053	+				-0.7
5,049,053	+				-0.5
5,049,053	+				-0.6
5,049,053	+				-0.6
5,049,053	+				+0.4
5,049,056	-				+0.6
5,049,058	+				+0.5
5,049,058	+				-1.9
5,049,058	+				-0.1
5,049,058	+				+0.8
5,049,058	+				-0.3
5,049,058	+				-1.7
5,049,061	-				-1.2
5,049,061	-				-0.8
5,049,061	-				-1.9
5,049,066	-				+1.3
5,049,066	-				-0.9
5,049,066	-				-1.3
5,049,066	-				+1.6
5,049,066	-				+0.4
5,049,068	-				-1.1
5,049,080	+				-0.6
5,049,088	-		GFF5053	0.10	+0.1
5,049,088	-		GFF5053	0.10	-0.7
5,049,110	+		GFF5053	0.16	-2.4
5,049,110	+		GFF5053	0.16	-0.2
5,049,111	+		GFF5053	0.16	-0.4
5,049,111	+		GFF5053	0.16	+0.3
5,049,111	+		GFF5053	0.16	-0.9
5,049,116	+		GFF5053	0.17	-1.2
5,049,119	-		GFF5053	0.18	-0.9
5,049,119	-		GFF5053	0.18	-0.2
5,049,119	-		GFF5053	0.18	-0.0
5,049,119	-		GFF5053	0.18	+0.3
5,049,131	-		GFF5053	0.21	-1.0
5,049,132	+		GFF5053	0.22	-0.5
5,049,170	-		GFF5053	0.31	-1.3
5,049,171	+		GFF5053	0.32	-0.2
5,049,171	+		GFF5053	0.32	-1.2
5,049,171	+		GFF5053	0.32	-1.8
5,049,171	+		GFF5053	0.32	-0.2
5,049,171	+		GFF5053	0.32	+0.3
5,049,179	-		GFF5053	0.34	+0.4
5,049,179	-		GFF5053	0.34	-1.9
5,049,179	-		GFF5053	0.34	+0.7
5,049,179	-		GFF5053	0.34	-2.0
5,049,189	-		GFF5053	0.36	-0.9
5,049,192	-		GFF5053	0.37	-2.5
5,049,199	+		GFF5053	0.39	-0.8
5,049,207	-		GFF5053	0.41	-0.4
5,049,207	-		GFF5053	0.41	+0.1
5,049,233	+		GFF5053	0.48	-0.1
5,049,235	+		GFF5053	0.49	-0.2
5,049,236	+		GFF5053	0.49	-0.2
5,049,236	-		GFF5053	0.49	-1.1
5,049,264	+		GFF5053	0.56	+0.7
5,049,264	+		GFF5053	0.56	-0.3
5,049,264	+		GFF5053	0.56	-2.4
5,049,272	-		GFF5053	0.58	-0.8
5,049,282	-		GFF5053	0.61	-0.2
5,049,333	+		GFF5053	0.74	-0.6
5,049,335	-		GFF5053	0.75	+1.5
5,049,341	-		GFF5053	0.76	+0.1
5,049,345	+		GFF5053	0.77	-2.8
5,049,345	+		GFF5053	0.77	-1.4
5,049,345	+		GFF5053	0.77	+0.3
5,049,345	+		GFF5053	0.77	-2.3
5,049,345	+		GFF5053	0.77	-0.0
5,049,345	+		GFF5053	0.77	-0.9
5,049,353	-		GFF5053	0.80	-1.2
5,049,355	+		GFF5053	0.80	-1.8
5,049,363	-		GFF5053	0.82	-0.2
5,049,377	-		GFF5053	0.86	+0.7
5,049,378	+		GFF5053	0.86	-0.2
5,049,390	+		GFF5053	0.89	-0.6
5,049,390	+		GFF5053	0.89	-0.9
5,049,398	-				+1.0
5,049,398	-				-3.5
5,049,398	-				-2.3
5,049,398	-				+1.0
5,049,398	-				+0.1
5,049,425	+				-1.7
5,049,433	-				-1.0
5,049,467	-				-0.0
5,049,482	+				-0.4
5,049,482	+				-1.3
5,049,482	+				-1.7
5,049,482	+				+1.8
5,049,482	-				-2.2
5,049,490	-				-0.4
5,049,490	-				-0.4
5,049,492	+				-0.4
5,049,492	+				-0.1
5,049,492	+				-0.6
5,049,500	-				-1.9
5,049,507	+				-0.1
5,049,514	+				+0.0
5,049,515	-				-0.2
5,049,515	-				-0.8
5,049,515	-				-0.2
5,049,544	-				-2.1
5,049,544	-				-1.0
5,049,544	-				-1.5
5,049,544	-				-2.5
5,049,558	-		GFF5054	0.10	-1.4
5,049,572	-		GFF5054	0.13	-0.0
5,049,608	+		GFF5054	0.21	-0.1
5,049,616	-		GFF5054	0.23	-0.3
5,049,629	-		GFF5054	0.25	-0.6
5,049,659	+		GFF5054	0.32	-1.7
5,049,667	-		GFF5054	0.33	+1.1
5,049,726	+		GFF5054	0.46	+0.6
5,049,726	+		GFF5054	0.46	-0.9
5,049,733	+		GFF5054	0.47	-0.4
5,049,784	-		GFF5054	0.58	-0.6
5,049,786	-		GFF5054	0.59	+0.4
5,049,793	+		GFF5054	0.60	-1.3
5,049,794	-		GFF5054	0.60	-0.6
5,049,824	+		GFF5054	0.67	-1.8
5,049,867	+		GFF5054	0.76	-0.1
5,049,867	+		GFF5054	0.76	-1.2
5,049,867	+		GFF5054	0.76	-1.9
5,049,878	+		GFF5054	0.78	-2.8
5,049,879	+		GFF5054	0.78	+0.2
5,049,879	+		GFF5054	0.78	-1.0
5,049,879	+		GFF5054	0.78	+0.1
5,049,887	-		GFF5054	0.80	-0.7
5,049,909	+		GFF5054	0.85	-0.7
5,049,909	+		GFF5054	0.85	-0.1
5,049,916	+		GFF5054	0.86	-0.0
5,049,916	+		GFF5054	0.86	-0.1
5,049,917	-		GFF5054	0.86	-2.5
5,049,924	-		GFF5054	0.88	-0.5
5,049,924	-		GFF5054	0.88	-1.5
5,049,924	-		GFF5054	0.88	-0.5
5,049,924	-		GFF5054	0.88	-0.4
5,049,924	-		GFF5054	0.88	-0.6
5,049,957	+				-2.2
5,049,962	+				-0.1
5,049,962	+				-2.2
5,049,965	-				+1.4
5,049,972	-				-1.2
5,049,972	-				-1.3
5,049,990	+				-0.9
5,049,998	-				-0.1