Strain Fitness in Sphingobium sp. HT1-2 around GFF5045

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,041,163	-		GFF5043	0.58	+0.4
5,041,168	-		GFF5043	0.62	-1.0
5,041,174	+		GFF5043	0.67	-0.9
5,041,174	+		GFF5043	0.67	+1.3
5,041,174	-		GFF5043	0.67	-1.0
5,041,174	-		GFF5043	0.67	+0.4
5,041,178	-		GFF5043	0.70	-2.8
5,041,182	-		GFF5043	0.73	-0.0
5,041,229	-				-1.0
5,041,240	+				-0.2
5,041,240	+				-0.4
5,041,248	+				-0.1
5,041,248	-				+0.4
5,041,248	-				-0.4
5,041,248	-				-0.1
5,041,250	-				-0.4
5,041,250	-				-1.4
5,041,256	-				-1.4
5,041,287	+				-1.3
5,041,305	-				-2.8
5,041,338	-				-0.4
5,041,340	+				+0.2
5,041,340	+				-1.3
5,041,340	+				-0.7
5,041,348	-				-1.8
5,041,348	-				-0.1
5,041,348	-				+0.7
5,041,348	-				+0.1
5,041,363	+				-0.9
5,041,384	-				-1.8
5,041,421	+				+0.2
5,041,421	-				-1.0
5,041,422	+				-1.6
5,041,422	+				-0.7
5,041,441	+				-0.2
5,041,447	+				-0.2
5,041,447	+				-0.8
5,041,455	-				+0.4
5,041,458	+				+0.9
5,041,461	+				-1.3
5,041,478	+				-1.8
5,041,484	-				-1.1
5,041,492	-				+0.1
5,041,511	+				-1.2
5,041,514	-				-1.7
5,041,518	-				-0.6
5,041,540	-				+1.2
5,041,542	+				-0.3
5,041,550	-				+0.3
5,041,552	+				-0.0
5,041,560	+		GFF5044	0.10	-0.8
5,041,584	+		GFF5044	0.14	+0.2
5,041,589	+		GFF5044	0.15	+0.7
5,041,594	+		GFF5044	0.15	-0.3
5,041,597	-		GFF5044	0.16	-0.2
5,041,597	-		GFF5044	0.16	+0.3
5,041,604	+		GFF5044	0.17	+0.7
5,041,642	-		GFF5044	0.23	-0.8
5,041,655	+		GFF5044	0.25	-1.9
5,041,668	+		GFF5044	0.27	-1.3
5,041,668	+		GFF5044	0.27	+0.8
5,041,668	+		GFF5044	0.27	+0.5
5,041,668	+		GFF5044	0.27	-0.0
5,041,668	+		GFF5044	0.27	-1.7
5,041,668	+		GFF5044	0.27	-0.5
5,041,668	+		GFF5044	0.27	+0.7
5,041,668	+		GFF5044	0.27	+0.0
5,041,668	+		GFF5044	0.27	-1.4
5,041,668	+		GFF5044	0.27	-1.4
5,041,668	+		GFF5044	0.27	+1.1
5,041,676	-		GFF5044	0.28	+0.3
5,041,676	-		GFF5044	0.28	-1.2
5,041,698	-		GFF5044	0.31	+0.5
5,041,749	-		GFF5044	0.39	-0.5
5,041,768	+		GFF5044	0.42	-0.2
5,041,775	-		GFF5044	0.43	-1.0
5,041,775	-		GFF5044	0.43	-0.6
5,041,790	-		GFF5044	0.45	+0.5
5,041,810	-		GFF5044	0.48	+0.3
5,041,816	-		GFF5044	0.49	-0.0
5,041,850	-		GFF5044	0.54	+0.1
5,041,850	-		GFF5044	0.54	-0.9
5,041,855	-		GFF5044	0.55	-1.0
5,041,857	+		GFF5044	0.56	-0.5
5,041,857	+		GFF5044	0.56	-0.6
5,041,857	+		GFF5044	0.56	-1.4
5,041,857	+		GFF5044	0.56	-1.7
5,041,857	+		GFF5044	0.56	-2.0
5,041,865	-		GFF5044	0.57	-1.6
5,041,865	-		GFF5044	0.57	-0.1
5,041,865	-		GFF5044	0.57	-0.9
5,041,869	-		GFF5044	0.57	-2.9
5,041,891	-		GFF5044	0.61	-0.6
5,041,920	+		GFF5044	0.65	+0.3
5,041,940	+		GFF5044	0.68	-1.5
5,041,940	+		GFF5044	0.68	-1.3
5,041,940	+		GFF5044	0.68	+1.3
5,041,944	-		GFF5044	0.69	-0.4
5,041,947	+		GFF5044	0.69	-2.3
5,041,948	-		GFF5044	0.69	-0.8
5,041,948	-		GFF5044	0.69	-1.1
5,041,948	-		GFF5044	0.69	-2.1
5,041,948	-		GFF5044	0.69	-0.7
5,041,948	-		GFF5044	0.69	-1.8
5,041,964	+		GFF5044	0.72	+0.6
5,041,972	+		GFF5044	0.73	-2.2
5,041,976	+		GFF5044	0.74	-2.5
5,041,982	+		GFF5044	0.75	+0.7
5,041,990	-		GFF5044	0.76	+0.5
5,041,995	+		GFF5044	0.77	+0.7
5,042,000	+		GFF5044	0.77	+1.0
5,042,008	+		GFF5044	0.79	-0.2
5,042,008	+		GFF5044	0.79	-0.4
5,042,008	+		GFF5044	0.79	-0.8
5,042,008	+		GFF5044	0.79	-0.8
5,042,008	+		GFF5044	0.79	+0.7
5,042,008	+		GFF5044	0.79	-0.6
5,042,008	+		GFF5044	0.79	-2.3
5,042,008	-		GFF5044	0.79	-0.3
5,042,008	-		GFF5044	0.79	-0.9
5,042,008	-		GFF5044	0.79	-0.4
5,042,008	-		GFF5044	0.79	-0.1
5,042,008	-		GFF5044	0.79	+1.2
5,042,008	-		GFF5044	0.79	-0.2
5,042,016	-		GFF5044	0.80	-1.0
5,042,016	-		GFF5044	0.80	+1.9
5,042,016	-		GFF5044	0.80	-0.5
5,042,016	-		GFF5044	0.80	+0.6
5,042,016	-		GFF5044	0.80	-0.8
5,042,041	-		GFF5044	0.84	-0.4
5,042,097	+				+0.0
5,042,106	-				+1.5
5,042,118	-				-0.7
5,042,118	-				-0.7
5,042,125	+				-2.8
5,042,164	+				-1.5
5,042,209	+				+0.4
5,042,212	-				-0.1
5,042,227	+				+0.7
5,042,248	-				-0.5
5,042,275	+				+0.8
5,042,278	-				+0.9
5,042,280	+				-0.3
5,042,280	+				+0.2
5,042,283	-				-2.6
5,042,319	+		GFF5045	0.11	-0.6
5,042,324	+		GFF5045	0.11	-1.2
5,042,339	-		GFF5045	0.12	-0.2
5,042,366	+		GFF5045	0.14	+0.2
5,042,386	+		GFF5045	0.16	-2.2
5,042,411	+		GFF5045	0.17	+0.2
5,042,411	+		GFF5045	0.17	-2.3
5,042,415	-		GFF5045	0.18	-0.2
5,042,416	+		GFF5045	0.18	+0.4
5,042,419	-		GFF5045	0.18	-1.0
5,042,419	-		GFF5045	0.18	-1.2
5,042,419	-		GFF5045	0.18	+1.5
5,042,421	+		GFF5045	0.18	-0.0
5,042,421	+		GFF5045	0.18	-0.1
5,042,421	+		GFF5045	0.18	-0.5
5,042,421	+		GFF5045	0.18	+0.2
5,042,429	-		GFF5045	0.19	-1.0
5,042,429	-		GFF5045	0.19	-2.9
5,042,429	-		GFF5045	0.19	-0.0
5,042,429	-		GFF5045	0.19	+0.4
5,042,430	-		GFF5045	0.19	+0.1
5,042,430	-		GFF5045	0.19	-0.3
5,042,435	-		GFF5045	0.19	-1.2
5,042,478	-		GFF5045	0.22	-0.7
5,042,489	+		GFF5045	0.23	-2.0
5,042,509	+		GFF5045	0.24	-1.7
5,042,522	-		GFF5045	0.25	-0.6
5,042,524	+		GFF5045	0.25	+0.0
5,042,532	-		GFF5045	0.26	-0.1
5,042,536	+		GFF5045	0.26	-1.2
5,042,536	+		GFF5045	0.26	-0.8
5,042,536	+		GFF5045	0.26	-1.9
5,042,536	+		GFF5045	0.26	-0.3
5,042,541	+		GFF5045	0.26	-1.5
5,042,544	-		GFF5045	0.26	+0.7
5,042,544	-		GFF5045	0.26	-2.0
5,042,544	-		GFF5045	0.26	-2.2
5,042,544	-		GFF5045	0.26	-0.6
5,042,544	-		GFF5045	0.26	-1.7
5,042,544	-		GFF5045	0.26	-1.7
5,042,544	-		GFF5045	0.26	+0.4
5,042,544	-		GFF5045	0.26	-0.8
5,042,565	+		GFF5045	0.28	-0.8
5,042,594	+		GFF5045	0.30	-1.3
5,042,602	+		GFF5045	0.30	-0.4
5,042,602	+		GFF5045	0.30	-0.7
5,042,602	-		GFF5045	0.30	-0.8
5,042,606	-		GFF5045	0.31	+0.3
5,042,610	-		GFF5045	0.31	-1.8
5,042,618	+		GFF5045	0.32	+0.8
5,042,637	-		GFF5045	0.33	-1.8
5,042,638	-		GFF5045	0.33	+0.1
5,042,639	+		GFF5045	0.33	+0.8
5,042,639	+		GFF5045	0.33	-1.3
5,042,639	+		GFF5045	0.33	-0.1
5,042,647	-		GFF5045	0.34	-1.8
5,042,670	+		GFF5045	0.35	-2.2
5,042,673	-		GFF5045	0.35	-1.0
5,042,678	-		GFF5045	0.36	-0.8
5,042,695	-		GFF5045	0.37	-1.9
5,042,695	-		GFF5045	0.37	-2.0
5,042,697	+		GFF5045	0.37	-0.1
5,042,697	+		GFF5045	0.37	+0.5
5,042,702	+		GFF5045	0.37	-0.4
5,042,705	-		GFF5045	0.38	-0.8
5,042,705	-		GFF5045	0.38	-0.6
5,042,705	-		GFF5045	0.38	+0.8
5,042,712	+		GFF5045	0.38	-2.1
5,042,719	+		GFF5045	0.38	-0.0
5,042,721	+		GFF5045	0.39	+0.8
5,042,741	-		GFF5045	0.40	-1.0
5,042,743	+		GFF5045	0.40	-0.3
5,042,743	+		GFF5045	0.40	+0.5
5,042,743	+		GFF5045	0.40	+0.0
5,042,748	+		GFF5045	0.40	-0.0
5,042,751	-		GFF5045	0.41	-1.8
5,042,756	-		GFF5045	0.41	-0.6
5,042,771	-		GFF5045	0.42	-1.2
5,042,773	-		GFF5045	0.42	-2.0
5,042,774	+		GFF5045	0.42	-0.1
5,042,782	-		GFF5045	0.43	-2.4
5,042,782	-		GFF5045	0.43	+1.1
5,042,809	-		GFF5045	0.45	+0.3
5,042,814	+		GFF5045	0.45	-0.7
5,042,818	+		GFF5045	0.45	-1.9
5,042,818	+		GFF5045	0.45	-0.3
5,042,818	+		GFF5045	0.45	+0.6
5,042,818	+		GFF5045	0.45	+0.0
5,042,819	+		GFF5045	0.45	-1.0
5,042,826	-		GFF5045	0.46	-2.2
5,042,826	-		GFF5045	0.46	+0.8
5,042,826	-		GFF5045	0.46	-1.5
5,042,826	-		GFF5045	0.46	+0.2
5,042,826	-		GFF5045	0.46	-0.2
5,042,835	-		GFF5045	0.46	+0.9
5,042,841	+		GFF5045	0.47	-1.2
5,042,848	-		GFF5045	0.47	+0.1
5,042,861	+		GFF5045	0.48	-0.6
5,042,867	-		GFF5045	0.49	-0.6
5,042,869	-		GFF5045	0.49	-1.0
5,042,877	-		GFF5045	0.49	-2.0
5,042,877	-		GFF5045	0.49	-0.6
5,042,909	-		GFF5045	0.52	-0.5
5,042,951	+		GFF5045	0.54	+0.3
5,042,974	+		GFF5045	0.56	+0.0
5,042,986	-		GFF5045	0.57	-0.5
5,043,003	-		GFF5045	0.58	-0.5
5,043,003	-		GFF5045	0.58	+0.5
5,043,019	+		GFF5045	0.59	-0.4
5,043,083	-		GFF5045	0.64	-1.1
5,043,105	+		GFF5045	0.65	+1.0
5,043,108	-		GFF5045	0.65	-0.0
5,043,138	+		GFF5045	0.67	+0.0
5,043,156	-		GFF5045	0.69	-1.6
5,043,169	+		GFF5045	0.69	-0.8
5,043,169	+		GFF5045	0.69	-0.2
5,043,169	+		GFF5045	0.69	-0.3
5,043,174	+		GFF5045	0.70	-2.8
5,043,175	+		GFF5045	0.70	+0.9
5,043,177	-		GFF5045	0.70	+1.5
5,043,177	-		GFF5045	0.70	-2.3
5,043,177	-		GFF5045	0.70	+0.2
5,043,179	+		GFF5045	0.70	-0.3
5,043,179	+		GFF5045	0.70	-0.6
5,043,182	-		GFF5045	0.70	-0.3
5,043,183	-		GFF5045	0.70	+0.0
5,043,187	-		GFF5045	0.71	+0.8
5,043,187	-		GFF5045	0.71	-0.3
5,043,189	+		GFF5045	0.71	-0.7
5,043,189	+		GFF5045	0.71	-0.9
5,043,189	+		GFF5045	0.71	-0.0
5,043,197	-		GFF5045	0.71	-1.7
5,043,219	-		GFF5045	0.73	+0.5
5,043,223	-		GFF5045	0.73	-1.7
5,043,233	-		GFF5045	0.74	+0.2
5,043,280	+		GFF5045	0.77	-1.8
5,043,282	+		GFF5045	0.77	-0.8
5,043,285	-		GFF5045	0.77	-1.6
5,043,288	-		GFF5045	0.78	+0.0
5,043,288	-		GFF5045	0.78	+0.2
5,043,366	-		GFF5045	0.83	+0.4
5,043,373	-		GFF5045	0.84	+0.2
5,043,410	-		GFF5045	0.86	+0.2
5,043,411	-		GFF5045	0.86	+0.3
5,043,411	-		GFF5045	0.86	-0.3
5,043,416	-		GFF5045	0.87	+1.0
5,043,421	+		GFF5045	0.87	-2.3
5,043,421	-		GFF5045	0.87	-0.5
5,043,423	+		GFF5045	0.87	-1.0
5,043,429	-		GFF5045	0.87	-0.4
5,043,469	+				+0.1
5,043,469	+				+0.2
5,043,477	-				+0.2
5,043,484	-				-3.0
5,043,492	+				-0.2
5,043,493	-				-1.4
5,043,493	-				-1.3
5,043,497	+				-2.0
5,043,500	-				-1.2
5,043,542	+				-0.2
5,043,551	+				-0.8
5,043,570	+				-1.5
5,043,572	+				-0.1
5,043,572	+				-1.4
5,043,572	+				+0.5
5,043,572	+				-0.1
5,043,572	+				-0.1
5,043,578	-				+0.3
5,043,578	-				-0.3
5,043,578	-				-0.5
5,043,578	-				-2.8
5,043,580	-				-1.4
5,043,580	-				-2.3
5,043,580	-				-2.0
5,043,598	-				-0.3
5,043,605	-				-0.1
5,043,605	-				+0.2
5,043,613	-				-0.4
5,043,613	-				-0.7
5,043,614	-				-0.7
5,043,630	-				+0.1
5,043,642	-				-0.6
5,043,643	+				+0.3
5,043,645	-				+0.6
5,043,647	-				-2.0
5,043,666	-				-0.0
5,043,709	-		GFF5046	0.15	-0.3
5,043,720	+		GFF5046	0.17	-0.5
5,043,738	-		GFF5046	0.21	-0.9
5,043,745	-		GFF5046	0.23	-0.2
5,043,774	+		GFF5046	0.29	-0.7
5,043,782	-		GFF5046	0.30	-1.9
5,043,789	+		GFF5046	0.32	+0.5
5,043,792	-		GFF5046	0.32	-2.0
5,043,792	-		GFF5046	0.32	+0.4
5,043,799	+		GFF5046	0.34	-0.6
5,043,799	+		GFF5046	0.34	-1.3
5,043,799	+		GFF5046	0.34	-1.4
5,043,799	+		GFF5046	0.34	+0.2
5,043,799	+		GFF5046	0.34	+0.3
5,043,799	+		GFF5046	0.34	+0.6
5,043,799	+		GFF5046	0.34	+0.6
5,043,799	+		GFF5046	0.34	+1.2
5,043,799	+		GFF5046	0.34	-0.5
5,043,805	+		GFF5046	0.35	-1.6
5,043,807	-		GFF5046	0.35	-0.2
5,043,807	-		GFF5046	0.35	-0.3
5,043,807	-		GFF5046	0.35	+0.2
5,043,807	-		GFF5046	0.35	-0.1
5,043,807	-		GFF5046	0.35	-1.0
5,043,807	-		GFF5046	0.35	-1.2
5,043,807	-		GFF5046	0.35	-1.4
5,043,810	+		GFF5046	0.36	-1.5
5,043,810	+		GFF5046	0.36	-0.8
5,043,810	+		GFF5046	0.36	-1.4
5,043,818	-		GFF5046	0.38	-0.7
5,043,818	-		GFF5046	0.38	+0.9
5,043,818	-		GFF5046	0.38	-1.2
5,043,818	-		GFF5046	0.38	+0.3
5,043,818	-		GFF5046	0.38	-1.7
5,043,818	-		GFF5046	0.38	+0.0
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