Strain Fitness in Sphingobium sp. HT1-2 around GFF5001

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,994,990	-				+0.4
4,994,998	+				-0.1
4,995,006	-				+0.7
4,995,011	+				+0.1
4,995,016	-				-1.1
4,995,038	+				-0.7
4,995,047	-				+0.1
4,995,049	+				-0.4
4,995,052	-				+1.0
4,995,052	-				-0.5
4,995,054	+				-0.2
4,995,057	-				+0.2
4,995,069	+				-0.8
4,995,080	+				-0.5
4,995,089	+				+0.9
4,995,089	+				+0.4
4,995,097	-				-0.7
4,995,097	-				-0.1
4,995,109	-				+0.8
4,995,110	+				+0.6
4,995,124	-				-0.2
4,995,202	+		GFF4999	0.33	-1.4
4,995,202	+		GFF4999	0.33	-0.5
4,995,281	+		GFF4999	0.86	+0.7
4,995,281	+		GFF4999	0.86	+0.4
4,995,289	-				+0.7
4,995,289	-				-0.5
4,995,296	+				-0.8
4,995,296	+				+0.9
4,995,296	+				-2.4
4,995,304	-				+1.6
4,995,304	-				+0.2
4,995,310	+				-0.5
4,995,316	+				-0.9
4,995,334	-				-0.3
4,995,366	-				+0.4
4,995,406	-		GFF5000	0.11	+0.2
4,995,434	-		GFF5000	0.16	-1.6
4,995,472	-		GFF5000	0.22	+0.4
4,995,492	+		GFF5000	0.26	+0.5
4,995,604	+		GFF5000	0.44	+0.8
4,995,604	+		GFF5000	0.44	+1.5
4,995,606	+		GFF5000	0.44	+0.5
4,995,612	-		GFF5000	0.45	+0.9
4,995,665	+		GFF5000	0.54	-1.0
4,995,665	+		GFF5000	0.54	-0.0
4,995,665	+		GFF5000	0.54	+0.2
4,995,665	+		GFF5000	0.54	+0.2
4,995,673	-		GFF5000	0.55	+0.8
4,995,673	-		GFF5000	0.55	-0.1
4,995,673	-		GFF5000	0.55	-1.4
4,995,673	-		GFF5000	0.55	+0.2
4,995,673	-		GFF5000	0.55	+0.7
4,995,673	-		GFF5000	0.55	+1.2
4,995,673	-		GFF5000	0.55	+1.3
4,995,691	+		GFF5000	0.58	-1.8
4,995,709	+		GFF5000	0.61	-2.9
4,995,709	+		GFF5000	0.61	-0.4
4,995,709	+		GFF5000	0.61	+0.3
4,995,717	-		GFF5000	0.63	-0.2
4,995,722	-		GFF5000	0.63	+0.2
4,995,727	-		GFF5000	0.64	+0.8
4,995,747	-		GFF5000	0.67	+0.5
4,995,749	+		GFF5000	0.68	-1.7
4,995,758	+		GFF5000	0.69	+0.1
4,995,771	+		GFF5000	0.71	+0.0
4,995,810	+		GFF5000	0.78	+0.9
4,995,820	+		GFF5000	0.79	-1.5
4,995,820	+		GFF5000	0.79	-1.1
4,995,820	+		GFF5000	0.79	-0.8
4,995,822	-		GFF5000	0.80	+0.1
4,995,823	-		GFF5000	0.80	-1.1
4,995,825	+		GFF5000	0.80	-1.5
4,995,828	-		GFF5000	0.81	+0.3
4,995,828	-		GFF5000	0.81	+0.2
4,995,873	-		GFF5000	0.88	-0.1
4,995,889	-				-1.7
4,995,894	-				-0.1
4,995,894	-				-0.2
4,995,894	-				-1.3
4,995,946	-				+0.6
4,995,946	-				+0.9
4,995,954	+				+1.1
4,995,962	-				+1.5
4,995,967	+				+0.6
4,995,967	+				+0.1
4,995,968	+				+0.7
4,995,968	+				+0.7
4,995,972	+				+0.1
4,995,978	+				-0.9
4,995,978	+				-0.5
4,996,006	-				+0.9
4,996,067	-		GFF5001	0.24	+0.4
4,996,080	+		GFF5001	0.28	-0.8
4,996,080	+		GFF5001	0.28	-0.5
4,996,088	-		GFF5001	0.30	+0.2
4,996,088	-		GFF5001	0.30	+0.8
4,996,144	+		GFF5001	0.46	+0.8
4,996,147	-		GFF5001	0.46	-0.2
4,996,149	-		GFF5001	0.47	-0.6
4,996,151	+		GFF5001	0.47	-0.9
4,996,151	+		GFF5001	0.47	-2.0
4,996,154	-		GFF5001	0.48	-1.0
4,996,159	-		GFF5001	0.50	-2.0
4,996,159	-		GFF5001	0.50	+0.5
4,996,169	+		GFF5001	0.53	+0.9
4,996,169	+		GFF5001	0.53	+0.1
4,996,169	+		GFF5001	0.53	+0.3
4,996,169	+		GFF5001	0.53	-0.7
4,996,191	+		GFF5001	0.59	-1.9
4,996,193	+		GFF5001	0.59	+0.9
4,996,211	+		GFF5001	0.64	+0.5
4,996,213	+		GFF5001	0.65	+0.1
4,996,214	-		GFF5001	0.65	+0.3
4,996,224	-		GFF5001	0.68	-0.3
4,996,233	+		GFF5001	0.70	-1.8
4,996,241	-		GFF5001	0.72	+0.5
4,996,241	-		GFF5001	0.72	+1.1
4,996,241	-		GFF5001	0.72	-1.7
4,996,241	-		GFF5001	0.72	+0.6
4,996,261	+		GFF5001	0.78	-1.8
4,996,261	+		GFF5001	0.78	-0.3
4,996,261	+		GFF5001	0.78	-0.7
4,996,261	+		GFF5001	0.78	+0.1
4,996,261	+		GFF5001	0.78	-1.0
4,996,261	+		GFF5001	0.78	-0.0
4,996,261	+		GFF5001	0.78	-2.4
4,996,261	+		GFF5001	0.78	-0.7
4,996,261	+		GFF5001	0.78	+0.2
4,996,269	-		GFF5001	0.80	+0.7
4,996,269	-		GFF5001	0.80	+1.9
4,996,269	-		GFF5001	0.80	-0.1
4,996,269	-		GFF5001	0.80	+0.6
4,996,269	-		GFF5001	0.80	+2.3
4,996,269	-		GFF5001	0.80	-0.4
4,996,269	-		GFF5001	0.80	-0.1
4,996,269	-		GFF5001	0.80	+0.4
4,996,271	+		GFF5001	0.81	+0.2
4,996,272	+		GFF5001	0.81	-0.5
4,996,280	+		GFF5001	0.83	-0.4
4,996,300	-		GFF5001	0.89	+1.0
4,996,310	+				+0.8
4,996,326	+				+0.3
4,996,329	-				+0.5
4,996,351	+				+0.5
4,996,351	+				-0.1
4,996,351	+				-0.2
4,996,356	+				-0.2
4,996,359	-				+0.5
4,996,359	-				-1.8
4,996,359	-				-0.0
4,996,359	-				-0.4
4,996,359	-				+1.1
4,996,359	-				-0.1
4,996,359	-				+0.3
4,996,364	-				+0.8
4,996,374	+				+0.6
4,996,419	+				-0.9
4,996,426	+				-1.3
4,996,426	+				+1.4
4,996,426	+				+0.2
4,996,450	+		GFF5002	0.13	-1.9
4,996,472	+		GFF5002	0.16	-0.1
4,996,507	+		GFF5002	0.20	+0.5
4,996,507	+		GFF5002	0.20	-0.6
4,996,507	+		GFF5002	0.20	+0.1
4,996,515	-		GFF5002	0.21	+1.1
4,996,515	-		GFF5002	0.21	-0.5
4,996,515	-		GFF5002	0.21	-0.8
4,996,515	-		GFF5002	0.21	-0.6
4,996,533	+		GFF5002	0.24	-1.9
4,996,533	+		GFF5002	0.24	-1.0
4,996,535	+		GFF5002	0.24	-0.5
4,996,544	+		GFF5002	0.25	+0.7
4,996,552	-		GFF5002	0.26	-0.5
4,996,559	-		GFF5002	0.27	+0.8
4,996,561	+		GFF5002	0.27	-1.2
4,996,566	+		GFF5002	0.28	+0.1
4,996,569	-		GFF5002	0.28	-0.1
4,996,574	+		GFF5002	0.29	-0.1
4,996,581	-		GFF5002	0.30	-2.2
4,996,582	-		GFF5002	0.30	-0.4
4,996,582	-		GFF5002	0.30	-0.7
4,996,593	-		GFF5002	0.31	+0.0
4,996,616	+		GFF5002	0.35	+0.5
4,996,616	+		GFF5002	0.35	-0.8
4,996,616	-		GFF5002	0.35	+1.0
4,996,624	-		GFF5002	0.36	+0.5
4,996,629	-		GFF5002	0.36	+0.3
4,996,629	-		GFF5002	0.36	+0.7
4,996,631	+		GFF5002	0.36	+0.6
4,996,639	+		GFF5002	0.38	+0.6
4,996,646	-		GFF5002	0.38	-1.5
4,996,649	+		GFF5002	0.39	-0.6
4,996,649	+		GFF5002	0.39	+0.8
4,996,649	+		GFF5002	0.39	-1.4
4,996,649	+		GFF5002	0.39	+1.4
4,996,649	+		GFF5002	0.39	-0.3
4,996,649	+		GFF5002	0.39	+0.4
4,996,654	+		GFF5002	0.40	-0.4
4,996,654	+		GFF5002	0.40	+0.1
4,996,657	-		GFF5002	0.40	+0.5
4,996,657	-		GFF5002	0.40	+0.2
4,996,657	-		GFF5002	0.40	+0.1
4,996,657	-		GFF5002	0.40	+0.1
4,996,657	-		GFF5002	0.40	+0.3
4,996,657	-		GFF5002	0.40	+1.8
4,996,657	-		GFF5002	0.40	-0.7
4,996,662	-		GFF5002	0.41	+0.6
4,996,662	-		GFF5002	0.41	+0.7
4,996,662	-		GFF5002	0.41	-0.0
4,996,667	-		GFF5002	0.41	-1.5
4,996,713	+		GFF5002	0.47	-0.4
4,996,729	+		GFF5002	0.49	+0.5
4,996,737	-		GFF5002	0.50	+0.6
4,996,754	-		GFF5002	0.53	+0.1
4,996,754	-		GFF5002	0.53	+0.6
4,996,754	-		GFF5002	0.53	-1.8
4,996,754	-		GFF5002	0.53	+1.1
4,996,754	-		GFF5002	0.53	-0.1
4,996,754	-		GFF5002	0.53	-0.5
4,996,764	+		GFF5002	0.54	-0.2
4,996,764	+		GFF5002	0.54	-1.5
4,996,774	-		GFF5002	0.55	-2.7
4,996,814	+		GFF5002	0.60	+0.4
4,996,814	+		GFF5002	0.60	+1.5
4,996,825	+		GFF5002	0.62	+0.1
4,996,826	+		GFF5002	0.62	-0.2
4,996,835	-		GFF5002	0.63	-0.1
4,996,837	+		GFF5002	0.64	-1.1
4,996,839	-		GFF5002	0.64	-1.2
4,996,839	-		GFF5002	0.64	+0.7
4,996,856	-		GFF5002	0.66	+0.1
4,996,857	+		GFF5002	0.66	-0.2
4,996,857	+		GFF5002	0.66	+0.0
4,996,865	-		GFF5002	0.67	+0.0
4,996,865	-		GFF5002	0.67	-0.7
4,996,865	-		GFF5002	0.67	+0.7
4,996,875	+		GFF5002	0.69	+0.7
4,996,889	+		GFF5002	0.70	-0.3
4,996,892	-		GFF5002	0.71	-2.1
4,996,913	+		GFF5002	0.73	-1.2
4,996,913	+		GFF5002	0.73	+0.4
4,996,926	+		GFF5002	0.75	+0.7
4,996,926	-		GFF5002	0.75	+0.4
4,996,955	+		GFF5002	0.79	-0.3
4,996,973	+		GFF5002	0.81	-0.5
4,996,973	+		GFF5002	0.81	-0.7
4,996,981	-		GFF5002	0.82	+1.0
4,996,988	+		GFF5002	0.83	-0.2
4,996,991	-		GFF5002	0.84	-1.1
4,997,011	-		GFF5002	0.86	+1.9
4,997,044	-				+0.1
4,997,047	+				-0.3
4,997,055	-				+0.4
4,997,063	-				-0.4
4,997,086	-				+1.2
4,997,096	+				+0.8
4,997,096	+				-0.2
4,997,096	+				-0.3
4,997,096	+				+1.0
4,997,096	+				+0.0
4,997,096	+				+0.0
4,997,096	+				+0.8
4,997,104	-				+0.5
4,997,104	-				+1.1
4,997,104	-				+0.9
4,997,104	-				+1.1
4,997,104	-				-0.8
4,997,104	-				-0.4
4,997,104	-				+0.4
4,997,104	-				-2.1
4,997,104	-				+0.2
4,997,104	-				-0.5
4,997,146	-				+0.0
4,997,149	+				+1.2
4,997,149	+				+0.1
4,997,149	+				-2.7
4,997,149	+				+1.0
4,997,149	+				-1.5
4,997,149	+				+0.0
4,997,149	+				-0.1
4,997,149	+				+0.7
4,997,154	+				+0.8
4,997,154	+				+0.1
4,997,157	-				-2.2
4,997,157	-				+0.9
4,997,162	-				-1.7
4,997,164	-				-0.7
4,997,177	-				+0.2
4,997,237	-				-0.1
4,997,245	-				+0.7
4,997,265	+				-2.4
4,997,338	-				-0.9