Strain Fitness in Sphingobium sp. HT1-2 around GFF4969

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,966,774	+				-0.6
4,966,784	+				-1.3
4,966,784	+				+0.2
4,966,784	+				+0.9
4,966,784	+				-3.4
4,966,784	+				-2.3
4,966,784	+				+0.7
4,966,784	+				+0.5
4,966,786	+				-0.6
4,966,791	+				-0.9
4,966,791	+				+0.1
4,966,791	+				-1.0
4,966,791	+				-0.3
4,966,791	+				-0.5
4,966,791	+				-1.5
4,966,791	+				-0.1
4,966,791	+				-2.3
4,966,791	+				-0.9
4,966,792	-				-1.8
4,966,792	-				-0.6
4,966,792	-				+0.0
4,966,792	-				-1.7
4,966,794	-				+0.9
4,966,796	+				-0.2
4,966,796	+				+0.0
4,966,796	+				-0.1
4,966,798	-				+0.2
4,966,799	-				-1.1
4,966,799	-				-0.7
4,966,799	-				+0.4
4,966,799	-				-0.2
4,966,799	-				-0.4
4,966,799	-				-1.8
4,966,799	-				+0.8
4,966,804	-				-0.4
4,966,804	-				-0.0
4,966,804	-				+0.3
4,966,804	-				-0.6
4,966,809	-				-1.3
4,966,810	+				-0.7
4,966,813	-				-1.6
4,966,845	+				-0.5
4,966,845	+				-0.3
4,966,845	+				+0.2
4,966,850	+				-1.7
4,966,850	+				-0.9
4,966,850	+				-0.6
4,966,850	+				-0.8
4,966,850	+				+0.5
4,966,850	+				-0.3
4,966,850	+				-0.7
4,966,850	+				-0.6
4,966,850	+				+1.0
4,966,850	+				-0.0
4,966,850	+				-3.2
4,966,850	+				-0.1
4,966,850	+				-0.9
4,966,850	+				-1.3
4,966,850	+				-0.8
4,966,850	+				-0.3
4,966,858	-				-0.8
4,966,858	-				-0.4
4,966,858	-				-1.6
4,966,858	-				+0.1
4,966,858	-				-2.3
4,966,858	-				-0.2
4,966,858	-				-0.6
4,966,858	-				-0.8
4,966,863	-				-0.2
4,966,873	+				+0.2
4,966,873	+				-0.1
4,966,879	+				-1.7
4,966,881	-				+0.6
4,966,915	-		GFF4968	0.13	-1.9
4,966,938	+		GFF4968	0.15	-0.6
4,966,948	-		GFF4968	0.16	+0.3
4,966,958	-		GFF4968	0.17	-1.0
4,966,969	+		GFF4968	0.18	-1.6
4,966,979	+		GFF4968	0.19	-1.8
4,966,979	+		GFF4968	0.19	+0.5
4,966,979	+		GFF4968	0.19	-0.2
4,966,979	+		GFF4968	0.19	-2.0
4,966,979	+		GFF4968	0.19	-0.0
4,966,987	-		GFF4968	0.20	+0.5
4,966,987	-		GFF4968	0.20	-1.9
4,966,987	-		GFF4968	0.20	+0.1
4,966,987	-		GFF4968	0.20	-1.3
4,966,987	-		GFF4968	0.20	+1.1
4,967,001	+		GFF4968	0.22	-0.1
4,967,036	-		GFF4968	0.25	-0.3
4,967,036	-		GFF4968	0.25	+0.7
4,967,094	-		GFF4968	0.31	-0.2
4,967,094	-		GFF4968	0.31	-0.3
4,967,094	-		GFF4968	0.31	-0.9
4,967,100	+		GFF4968	0.32	-0.4
4,967,125	+		GFF4968	0.35	+1.0
4,967,125	+		GFF4968	0.35	-0.3
4,967,128	-		GFF4968	0.35	-0.5
4,967,130	+		GFF4968	0.35	-0.6
4,967,133	-		GFF4968	0.36	+0.2
4,967,133	-		GFF4968	0.36	-0.1
4,967,135	+		GFF4968	0.36	+0.6
4,967,135	+		GFF4968	0.36	-0.6
4,967,135	+		GFF4968	0.36	-2.2
4,967,135	+		GFF4968	0.36	+0.5
4,967,135	+		GFF4968	0.36	-1.6
4,967,135	+		GFF4968	0.36	-2.2
4,967,135	+		GFF4968	0.36	-0.6
4,967,135	+		GFF4968	0.36	-2.3
4,967,135	+		GFF4968	0.36	-2.0
4,967,135	+		GFF4968	0.36	-3.4
4,967,135	+		GFF4968	0.36	-0.4
4,967,135	+		GFF4968	0.36	+0.1
4,967,135	+		GFF4968	0.36	-0.5
4,967,135	+		GFF4968	0.36	-1.2
4,967,135	+		GFF4968	0.36	-1.0
4,967,138	-		GFF4968	0.36	-0.1
4,967,138	-		GFF4968	0.36	-0.6
4,967,138	-		GFF4968	0.36	+1.3
4,967,140	+		GFF4968	0.36	+0.5
4,967,140	+		GFF4968	0.36	-0.4
4,967,143	-		GFF4968	0.37	-2.0
4,967,143	-		GFF4968	0.37	+0.8
4,967,143	-		GFF4968	0.37	-1.0
4,967,143	-		GFF4968	0.37	-0.7
4,967,143	-		GFF4968	0.37	-1.3
4,967,143	-		GFF4968	0.37	+0.9
4,967,143	-		GFF4968	0.37	-0.7
4,967,143	-		GFF4968	0.37	-2.1
4,967,143	-		GFF4968	0.37	-0.8
4,967,143	-		GFF4968	0.37	-1.8
4,967,143	-		GFF4968	0.37	+1.1
4,967,143	-		GFF4968	0.37	+0.8
4,967,143	-		GFF4968	0.37	-0.1
4,967,143	-		GFF4968	0.37	+0.1
4,967,143	-		GFF4968	0.37	-1.2
4,967,148	-		GFF4968	0.37	+0.0
4,967,149	+		GFF4968	0.37	-1.2
4,967,156	-		GFF4968	0.38	-0.7
4,967,158	-		GFF4968	0.38	-1.0
4,967,170	+		GFF4968	0.39	-0.4
4,967,198	-		GFF4968	0.42	-1.9
4,967,203	+		GFF4968	0.43	-1.9
4,967,203	-		GFF4968	0.43	+0.1
4,967,268	-		GFF4968	0.50	+1.2
4,967,268	-		GFF4968	0.50	-0.9
4,967,268	-		GFF4968	0.50	-0.7
4,967,270	+		GFF4968	0.50	-0.7
4,967,275	-		GFF4968	0.50	-0.3
4,967,275	-		GFF4968	0.50	-0.7
4,967,297	+		GFF4968	0.53	-0.9
4,967,317	+		GFF4968	0.55	+0.2
4,967,355	-		GFF4968	0.59	-1.1
4,967,392	+		GFF4968	0.63	+0.8
4,967,395	-		GFF4968	0.63	-1.8
4,967,400	-		GFF4968	0.63	+0.4
4,967,435	+		GFF4968	0.67	-0.7
4,967,435	+		GFF4968	0.67	-0.6
4,967,435	+		GFF4968	0.67	-0.9
4,967,435	+		GFF4968	0.67	-1.1
4,967,435	+		GFF4968	0.67	-2.3
4,967,435	+		GFF4968	0.67	+0.2
4,967,441	-		GFF4968	0.68	-1.8
4,967,443	-		GFF4968	0.68	+0.4
4,967,443	-		GFF4968	0.68	-1.5
4,967,443	-		GFF4968	0.68	+0.2
4,967,443	-		GFF4968	0.68	-0.4
4,967,443	-		GFF4968	0.68	-0.3
4,967,443	-		GFF4968	0.68	-0.7
4,967,454	+		GFF4968	0.69	-0.2
4,967,462	-		GFF4968	0.70	-1.2
4,967,479	-		GFF4968	0.72	+0.7
4,967,486	+		GFF4968	0.72	-1.9
4,967,486	+		GFF4968	0.72	-0.5
4,967,486	+		GFF4968	0.72	-1.2
4,967,486	+		GFF4968	0.72	-0.4
4,967,486	+		GFF4968	0.72	-1.8
4,967,491	+		GFF4968	0.73	-1.5
4,967,491	+		GFF4968	0.73	+0.4
4,967,494	-		GFF4968	0.73	-0.7
4,967,497	-		GFF4968	0.74	-0.2
4,967,502	+		GFF4968	0.74	-2.3
4,967,508	+		GFF4968	0.75	-1.4
4,967,516	-		GFF4968	0.76	-0.6
4,967,516	-		GFF4968	0.76	-2.0
4,967,523	+		GFF4968	0.76	+0.2
4,967,523	+		GFF4968	0.76	+0.3
4,967,523	+		GFF4968	0.76	-0.6
4,967,528	+		GFF4968	0.77	-0.5
4,967,528	+		GFF4968	0.77	-0.3
4,967,528	+		GFF4968	0.77	+0.6
4,967,528	+		GFF4968	0.77	-1.8
4,967,528	+		GFF4968	0.77	-1.2
4,967,528	+		GFF4968	0.77	+0.1
4,967,528	+		GFF4968	0.77	-0.3
4,967,528	+		GFF4968	0.77	+1.0
4,967,528	+		GFF4968	0.77	-1.1
4,967,531	-		GFF4968	0.77	+0.4
4,967,531	-		GFF4968	0.77	-1.2
4,967,531	-		GFF4968	0.77	-0.5
4,967,531	-		GFF4968	0.77	-0.3
4,967,531	-		GFF4968	0.77	-0.6
4,967,531	-		GFF4968	0.77	+0.0
4,967,531	-		GFF4968	0.77	-0.1
4,967,531	-		GFF4968	0.77	-0.1
4,967,533	+		GFF4968	0.77	+1.0
4,967,536	-		GFF4968	0.78	+0.4
4,967,536	-		GFF4968	0.78	+0.2
4,967,536	-		GFF4968	0.78	-1.9
4,967,541	-		GFF4968	0.78	-0.1
4,967,541	-		GFF4968	0.78	-0.3
4,967,568	+		GFF4968	0.81	-2.3
4,967,568	+		GFF4968	0.81	-2.6
4,967,568	+		GFF4968	0.81	+0.0
4,967,568	+		GFF4968	0.81	+0.5
4,967,568	+		GFF4968	0.81	-1.8
4,967,572	+		GFF4968	0.81	+0.4
4,967,576	-		GFF4968	0.82	+0.4
4,967,586	+		GFF4968	0.83	-0.2
4,967,588	-		GFF4968	0.83	-0.1
4,967,588	-		GFF4968	0.83	-2.1
4,967,588	-		GFF4968	0.83	-0.3
4,967,597	+		GFF4968	0.84	-1.1
4,967,599	+		GFF4968	0.84	-1.1
4,967,599	-		GFF4968	0.84	+0.5
4,967,620	-		GFF4968	0.86	-0.6
4,967,627	-		GFF4968	0.87	+0.7
4,967,643	+		GFF4968	0.89	-0.3
4,967,648	+		GFF4968	0.89	+0.3
4,967,648	+		GFF4968	0.89	+0.4
4,967,657	+				+0.6
4,967,662	+				-1.3
4,967,665	-				-1.8
4,967,672	+				+1.5
4,967,676	-				-0.4
4,967,701	+				-2.2
4,967,701	+				+0.4
4,967,701	+				+0.0
4,967,708	+				-1.2
4,967,750	+				+1.2
4,967,757	+				-0.9
4,967,765	+				-1.6
4,967,765	-				+0.2
4,967,781	+				+0.7
4,967,784	-				-0.0
4,967,789	-				-0.2
4,967,794	+				-0.1
4,967,799	+				-1.3
4,967,804	+				-2.1
4,967,804	+				-0.2
4,967,807	-				-0.9
4,967,812	-				+0.0
4,967,812	-				+0.2
4,967,812	-				-0.3
4,967,821	-				-0.8
4,967,821	-				+0.5
4,967,826	-				-1.8
4,967,831	+				-0.3
4,967,850	+				-0.3
4,967,860	-				+0.2
4,967,860	-				-1.1
4,967,881	-				-0.8
4,967,882	-				-0.6
4,967,882	-				-1.2
4,967,906	+		GFF4969	0.10	-0.2
4,967,906	+		GFF4969	0.10	-0.1
4,967,914	-		GFF4969	0.11	-0.0
4,967,914	-		GFF4969	0.11	+0.0
4,967,914	-		GFF4969	0.11	-0.6
4,967,915	-		GFF4969	0.11	-2.0
4,967,920	-		GFF4969	0.11	-0.5
4,967,920	-		GFF4969	0.11	-0.2
4,967,928	+		GFF4969	0.12	+0.9
4,967,928	+		GFF4969	0.12	+0.7
4,967,928	+		GFF4969	0.12	-1.4
4,967,930	+		GFF4969	0.12	+0.2
4,967,936	-		GFF4969	0.12	-1.7
4,967,936	-		GFF4969	0.12	+0.0
4,967,936	-		GFF4969	0.12	+1.2
4,967,936	-		GFF4969	0.12	-1.2
4,967,936	-		GFF4969	0.12	-1.8
4,967,943	-		GFF4969	0.13	-0.0
4,967,949	-		GFF4969	0.13	+0.5
4,967,949	-		GFF4969	0.13	-0.1
4,967,950	-		GFF4969	0.13	-1.2
4,967,955	-		GFF4969	0.14	-0.1
4,967,955	-		GFF4969	0.14	-1.1
4,967,978	+		GFF4969	0.15	-0.4
4,967,986	-		GFF4969	0.16	+0.0
4,967,996	-		GFF4969	0.16	-0.1
4,967,997	+		GFF4969	0.17	-2.8
4,968,002	+		GFF4969	0.17	-0.4
4,968,002	+		GFF4969	0.17	-0.9
4,968,002	+		GFF4969	0.17	-0.7
4,968,002	+		GFF4969	0.17	+0.6
4,968,010	-		GFF4969	0.17	-0.4
4,968,021	+		GFF4969	0.18	-2.4
4,968,053	+		GFF4969	0.20	-1.5
4,968,053	+		GFF4969	0.20	-2.0
4,968,053	+		GFF4969	0.20	-1.3
4,968,061	-		GFF4969	0.21	-1.2
4,968,061	-		GFF4969	0.21	-1.5
4,968,066	-		GFF4969	0.21	+0.6
4,968,066	-		GFF4969	0.21	+0.6
4,968,071	-		GFF4969	0.22	-1.2
4,968,081	+		GFF4969	0.22	+0.3
4,968,110	+		GFF4969	0.24	-1.1
4,968,118	-		GFF4969	0.25	-0.9
4,968,118	-		GFF4969	0.25	-0.5
4,968,128	+		GFF4969	0.26	-1.2
4,968,142	-		GFF4969	0.27	-1.6
4,968,148	+		GFF4969	0.27	-0.7
4,968,148	+		GFF4969	0.27	-1.0
4,968,169	+		GFF4969	0.29	-3.0
4,968,179	+		GFF4969	0.29	-1.0
4,968,182	-		GFF4969	0.30	-1.1
4,968,186	+		GFF4969	0.30	-0.9
4,968,187	-		GFF4969	0.30	-0.8
4,968,187	-		GFF4969	0.30	-0.6
4,968,187	-		GFF4969	0.30	-1.6
4,968,187	-		GFF4969	0.30	-0.0
4,968,187	-		GFF4969	0.30	+0.3
4,968,187	-		GFF4969	0.30	-2.0
4,968,194	-		GFF4969	0.30	-1.0
4,968,194	-		GFF4969	0.30	-0.8
4,968,194	-		GFF4969	0.30	+0.0
4,968,194	-		GFF4969	0.30	-0.9
4,968,199	+		GFF4969	0.31	+0.0
4,968,206	+		GFF4969	0.31	-0.8
4,968,206	+		GFF4969	0.31	-1.5
4,968,212	+		GFF4969	0.32	-0.3
4,968,212	+		GFF4969	0.32	-3.1
4,968,212	-		GFF4969	0.32	+0.3
4,968,212	-		GFF4969	0.32	+0.6
4,968,214	-		GFF4969	0.32	-0.9
4,968,220	-		GFF4969	0.32	+1.0
4,968,237	+		GFF4969	0.33	-1.0
4,968,249	+		GFF4969	0.34	+0.6
4,968,249	+		GFF4969	0.34	-0.7
4,968,252	-		GFF4969	0.34	-1.0
4,968,254	+		GFF4969	0.35	-1.4
4,968,254	+		GFF4969	0.35	-0.3
4,968,254	+		GFF4969	0.35	-0.1
4,968,262	-		GFF4969	0.35	-0.4
4,968,262	-		GFF4969	0.35	-0.4
4,968,267	-		GFF4969	0.36	-0.3
4,968,286	+		GFF4969	0.37	+0.9
4,968,290	-		GFF4969	0.37	-0.5
4,968,295	+		GFF4969	0.37	+0.1
4,968,299	-		GFF4969	0.38	-0.7
4,968,299	-		GFF4969	0.38	-3.1
4,968,312	+		GFF4969	0.39	-1.3
4,968,323	+		GFF4969	0.39	-1.0
4,968,359	-		GFF4969	0.42	+0.1
4,968,363	+		GFF4969	0.42	+0.2
4,968,385	+		GFF4969	0.44	-0.3
4,968,385	+		GFF4969	0.44	-1.7
4,968,416	-		GFF4969	0.46	-0.1
4,968,418	+		GFF4969	0.46	-2.9
4,968,423	+		GFF4969	0.46	-0.4
4,968,423	+		GFF4969	0.46	-1.0
4,968,431	-		GFF4969	0.47	-0.5
4,968,431	-		GFF4969	0.47	-1.5
4,968,431	-		GFF4969	0.47	-0.1
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4,968,800	-		GFF4969	0.73	-0.9
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4,968,802	+		GFF4969	0.73	-1.0
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4,968,957	-		GFF4969	0.84	-1.3
4,968,957	-		GFF4969	0.84	-0.6
4,968,957	-		GFF4969	0.84	-0.7
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4,968,957	-		GFF4969	0.84	-1.0
4,968,957	-		GFF4969	0.84	-0.5
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4,969,046	+				-0.2
4,969,051	+				+0.0
4,969,054	-				-2.1
4,969,059	-				-0.4
4,969,061	+				-0.6
4,969,100	-				-0.7
4,969,123	+				+0.1
4,969,123	+				-1.1
4,969,128	+				+0.6
4,969,136	-				+0.4
4,969,136	-				-1.7
4,969,147	+				+0.2
4,969,148	+				+0.1
4,969,155	+				+0.9
4,969,155	-				+0.6
4,969,155	-				-1.3
4,969,155	-				-2.3
4,969,155	-				-1.0
4,969,156	-				-1.4
4,969,156	-				-1.6
4,969,184	-				-1.5
4,969,192	+				-0.3
4,969,199	+				-0.9
4,969,215	+				-1.3
4,969,221	+				-0.7
4,969,243	+				-0.1
4,969,243	+				-1.7
4,969,243	+				-1.0
4,969,243	+				+0.2
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4,969,246	-				-0.1
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4,969,271	-				+0.6
4,969,276	-				-1.3
4,969,287	+				-1.1
4,969,287	+				+0.2
4,969,290	-				+0.7
4,969,295	-				-1.4
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4,969,714	-		GFF4970	0.41	-1.9
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