Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF491 and GFF492 are separated by 84 nucleotides GFF492 and GFF493 are separated by 25 nucleotides GFF493 and GFF494 are separated by 451 nucleotides
GFF491 - Probable transcriptional regulatory protein YebC, at 490,131 to 490,874
GFF491
GFF492 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 490,959 to 491,450
GFF492
GFF493 - hypothetical protein, at 491,476 to 491,706
GFF493
GFF494 - GAF domain/GGDEF domain/EAL domain protein, at 492,158 to 493,675
GFF494
Position (kb) 491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.583 kb on + strand, within GFF491 at 490.842 kb on - strand at 490.842 kb on - strand at 490.842 kb on - strand at 490.842 kb on - strand at 490.868 kb on + strand at 490.868 kb on + strand at 490.868 kb on + strand at 490.913 kb on + strand at 490.929 kb on + strand at 490.929 kb on + strand at 490.936 kb on - strand at 490.936 kb on - strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.948 kb on + strand at 490.960 kb on + strand at 491.054 kb on + strand, within GFF492 at 491.054 kb on + strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.062 kb on - strand, within GFF492 at 491.109 kb on + strand, within GFF492 at 491.112 kb on - strand, within GFF492 at 491.112 kb on - strand, within GFF492 at 491.205 kb on - strand, within GFF492 at 491.223 kb on - strand, within GFF492 at 491.233 kb on - strand, within GFF492 at 491.243 kb on - strand, within GFF492 at 491.316 kb on + strand, within GFF492 at 491.317 kb on + strand, within GFF492 at 491.321 kb on + strand, within GFF492 at 491.333 kb on + strand, within GFF492 at 491.410 kb on + strand at 491.425 kb on + strand at 491.433 kb on - strand at 491.440 kb on - strand at 491.449 kb on + strand at 491.458 kb on + strand at 491.477 kb on + strand at 491.487 kb on + strand at 491.487 kb on + strand at 491.488 kb on + strand at 491.491 kb on - strand at 491.520 kb on - strand, within GFF493 at 491.522 kb on - strand, within GFF493 at 491.532 kb on + strand, within GFF493 at 491.533 kb on - strand, within GFF493 at 491.535 kb on - strand, within GFF493 at 491.539 kb on - strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.570 kb on - strand, within GFF493 at 491.581 kb on + strand, within GFF493 at 491.630 kb on + strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.670 kb on - strand, within GFF493 at 491.672 kb on - strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.682 kb on - strand, within GFF493 at 491.726 kb on + strand at 491.728 kb on + strand at 491.736 kb on - strand at 491.758 kb on + strand at 491.758 kb on + strand at 491.766 kb on - strand at 491.766 kb on - strand at 491.781 kb on - strand at 491.843 kb on - strand at 491.902 kb on + strand at 491.910 kb on - strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.938 kb on - strand at 491.938 kb on - strand at 491.938 kb on - strand at 491.948 kb on - strand at 491.969 kb on + strand at 491.969 kb on + strand at 491.969 kb on + strand at 491.974 kb on + strand at 491.974 kb on + strand at 491.977 kb on - strand at 491.977 kb on - strand at 491.982 kb on - strand at 491.982 kb on - strand at 492.015 kb on + strand at 492.023 kb on - strand at 492.025 kb on + strand at 492.028 kb on - strand at 492.049 kb on + strand at 492.077 kb on + strand at 492.083 kb on - strand at 492.089 kb on + strand at 492.089 kb on + strand at 492.097 kb on - strand at 492.097 kb on - strand at 492.097 kb on - strand at 492.130 kb on + strand at 492.132 kb on + strand at 492.133 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.155 kb on + strand at 492.155 kb on + strand at 492.163 kb on - strand at 492.165 kb on + strand at 492.173 kb on - strand at 492.173 kb on - strand at 492.212 kb on + strand at 492.214 kb on + strand at 492.214 kb on + strand at 492.214 kb on + strand at 492.222 kb on - strand at 492.222 kb on - strand at 492.228 kb on - strand at 492.241 kb on - strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.293 kb on + strand at 492.299 kb on + strand at 492.301 kb on - strand at 492.301 kb on - strand at 492.301 kb on - strand at 492.324 kb on - strand, within GFF494 at 492.324 kb on - strand, within GFF494 at 492.324 kb on - strand, within GFF494 at 492.327 kb on + strand, within GFF494 at 492.335 kb on + strand, within GFF494 at 492.335 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.355 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.363 kb on - strand, within GFF494 at 492.367 kb on - strand, within GFF494 at 492.368 kb on - strand, within GFF494 at 492.370 kb on + strand, within GFF494 at 492.372 kb on - strand, within GFF494 at 492.375 kb on + strand, within GFF494 at 492.375 kb on + strand, within GFF494 at 492.383 kb on - strand, within GFF494 at 492.383 kb on - strand, within GFF494 at 492.402 kb on + strand, within GFF494 at 492.403 kb on - strand, within GFF494 at 492.410 kb on - strand, within GFF494 at 492.432 kb on + strand, within GFF494 at 492.442 kb on - strand, within GFF494 at 492.522 kb on - strand, within GFF494 at 492.618 kb on - strand, within GFF494 at 492.632 kb on - strand, within GFF494 at 492.678 kb on - strand, within GFF494 at 492.679 kb on - strand, within GFF494
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 490,583 + GFF491 0.61 -2.1 490,842 - -2.4 490,842 - -0.0 490,842 - -0.7 490,842 - +0.1 490,868 + +0.1 490,868 + -1.0 490,868 + -0.2 490,913 + -0.0 490,929 + +0.1 490,929 + -0.5 490,936 - +0.3 490,936 - -0.3 490,948 + +0.1 490,948 + +1.2 490,948 + +0.3 490,948 + -1.2 490,960 + +1.1 491,054 + GFF492 0.19 -0.5 491,054 + GFF492 0.19 -0.2 491,062 - GFF492 0.21 -0.6 491,062 - GFF492 0.21 -1.6 491,062 - GFF492 0.21 +0.7 491,109 + GFF492 0.30 +0.1 491,112 - GFF492 0.31 +0.5 491,112 - GFF492 0.31 -2.0 491,205 - GFF492 0.50 -0.6 491,223 - GFF492 0.54 +0.2 491,233 - GFF492 0.56 +0.5 491,243 - GFF492 0.58 -1.4 491,316 + GFF492 0.73 -1.7 491,317 + GFF492 0.73 -2.7 491,321 + GFF492 0.74 +0.5 491,333 + GFF492 0.76 -0.1 491,410 + -1.6 491,425 + -0.6 491,433 - -0.3 491,440 - +0.1 491,449 + -0.0 491,458 + -0.2 491,477 + -1.7 491,487 + -0.9 491,487 + -1.0 491,488 + +0.1 491,491 - +0.6 491,520 - GFF493 0.19 -0.3 491,522 - GFF493 0.20 -1.4 491,532 + GFF493 0.24 -0.3 491,533 - GFF493 0.25 -1.1 491,535 - GFF493 0.26 -1.0 491,539 - GFF493 0.27 -0.2 491,552 + GFF493 0.33 -1.5 491,552 + GFF493 0.33 -0.7 491,560 - GFF493 0.36 -0.4 491,560 - GFF493 0.36 +0.8 491,560 - GFF493 0.36 -0.5 491,570 - GFF493 0.41 +1.3 491,581 + GFF493 0.45 +0.9 491,630 + GFF493 0.67 -1.9 491,633 - GFF493 0.68 +1.2 491,633 - GFF493 0.68 -0.3 491,670 - GFF493 0.84 -1.0 491,672 - GFF493 0.85 -2.1 491,674 + GFF493 0.86 -0.8 491,674 + GFF493 0.86 +0.6 491,674 + GFF493 0.86 -1.4 491,682 - GFF493 0.89 -1.3 491,726 + -0.5 491,728 + +0.1 491,736 - -0.3 491,758 + -0.2 491,758 + +1.1 491,766 - +0.1 491,766 - +0.2 491,781 - -1.5 491,843 - -0.3 491,902 + -0.4 491,910 - +0.1 491,930 + +0.1 491,930 + +1.1 491,930 + +0.3 491,930 + +0.7 491,930 + -1.5 491,930 + -1.7 491,930 + -0.9 491,930 + +0.3 491,930 + -1.6 491,930 + -0.3 491,938 - +0.8 491,938 - +0.1 491,938 - -0.1 491,948 - -0.4 491,969 + +1.1 491,969 + +0.7 491,969 + -0.6 491,974 + +0.6 491,974 + +0.2 491,977 - +1.3 491,977 - -1.5 491,982 - -2.5 491,982 - +0.7 492,015 + -1.9 492,023 - -0.6 492,025 + -2.0 492,028 - +0.5 492,049 + +0.2 492,077 + +1.4 492,083 - +1.2 492,089 + +0.9 492,089 + +0.7 492,097 - -0.6 492,097 - -0.7 492,097 - +0.4 492,130 + -2.5 492,132 + -1.8 492,133 - +1.8 492,138 - -1.1 492,138 - -0.6 492,155 + +0.1 492,155 + -0.2 492,163 - +1.3 492,165 + -1.1 492,173 - -0.7 492,173 - -0.0 492,212 + +0.2 492,214 + -1.5 492,214 + +0.2 492,214 + +1.2 492,222 - -0.5 492,222 - +0.6 492,228 - -2.7 492,241 - +0.4 492,265 + -0.2 492,265 + -0.4 492,265 + -0.3 492,265 + -1.2 492,273 - +0.4 492,273 - -1.0 492,273 - -1.4 492,273 - +0.0 492,293 + +1.5 492,299 + +0.6 492,301 - +0.0 492,301 - -1.3 492,301 - -1.5 492,324 - GFF494 0.11 -1.1 492,324 - GFF494 0.11 -2.2 492,324 - GFF494 0.11 -1.0 492,327 + GFF494 0.11 -0.0 492,335 + GFF494 0.12 +1.1 492,335 + GFF494 0.12 +0.8 492,337 + GFF494 0.12 -0.9 492,337 + GFF494 0.12 -0.9 492,337 + GFF494 0.12 -0.4 492,337 + GFF494 0.12 +0.3 492,337 + GFF494 0.12 -0.7 492,337 + GFF494 0.12 -0.5 492,337 + GFF494 0.12 +0.5 492,337 + GFF494 0.12 -0.3 492,337 + GFF494 0.12 +0.7 492,337 + GFF494 0.12 -1.0 492,345 - GFF494 0.12 +0.2 492,345 - GFF494 0.12 -2.4 492,345 - GFF494 0.12 +0.3 492,345 - GFF494 0.12 +0.2 492,355 + GFF494 0.13 -1.6 492,360 + GFF494 0.13 -1.5 492,360 + GFF494 0.13 -0.1 492,360 + GFF494 0.13 +0.3 492,363 - GFF494 0.14 +1.5 492,367 - GFF494 0.14 -0.5 492,368 - GFF494 0.14 -1.4 492,370 + GFF494 0.14 +0.0 492,372 - GFF494 0.14 -0.1 492,375 + GFF494 0.14 -0.8 492,375 + GFF494 0.14 -0.2 492,383 - GFF494 0.15 +0.2 492,383 - GFF494 0.15 -1.7 492,402 + GFF494 0.16 -1.2 492,403 - GFF494 0.16 +0.3 492,410 - GFF494 0.17 -0.6 492,432 + GFF494 0.18 -0.2 492,442 - GFF494 0.19 +1.2 492,522 - GFF494 0.24 -1.5 492,618 - GFF494 0.30 -0.8 492,632 - GFF494 0.31 -0.2 492,678 - GFF494 0.34 -1.8 492,679 - GFF494 0.34 -1.0
Or see this region's nucleotide sequence