Strain Fitness in Sphingobium sp. HT1-2 around GFF4911

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,902,129	+		GFF4910	0.25	-1.0
4,902,129	+		GFF4910	0.25	-2.0
4,902,129	+		GFF4910	0.25	-1.8
4,902,129	+		GFF4910	0.25	-0.9
4,902,137	-		GFF4910	0.26	-1.0
4,902,137	-		GFF4910	0.26	-0.7
4,902,150	+		GFF4910	0.27	-1.8
4,902,150	+		GFF4910	0.27	-1.2
4,902,158	-		GFF4910	0.28	-1.2
4,902,168	-		GFF4910	0.29	-0.8
4,902,188	+		GFF4910	0.30	-0.1
4,902,188	+		GFF4910	0.30	-0.7
4,902,215	-		GFF4910	0.33	-0.0
4,902,220	+		GFF4910	0.33	-3.4
4,902,220	+		GFF4910	0.33	-0.3
4,902,225	+		GFF4910	0.34	+0.2
4,902,228	-		GFF4910	0.34	-1.4
4,902,233	-		GFF4910	0.34	+0.4
4,902,238	-		GFF4910	0.35	-0.2
4,902,238	-		GFF4910	0.35	+0.2
4,902,246	-		GFF4910	0.36	+0.4
4,902,247	-		GFF4910	0.36	+0.1
4,902,257	+		GFF4910	0.36	+0.5
4,902,258	+		GFF4910	0.37	-1.2
4,902,258	+		GFF4910	0.37	-0.9
4,902,266	-		GFF4910	0.37	-1.0
4,902,266	-		GFF4910	0.37	+0.6
4,902,310	+		GFF4910	0.41	-0.7
4,902,318	-		GFF4910	0.42	-0.9
4,902,386	+		GFF4910	0.48	-0.8
4,902,386	+		GFF4910	0.48	-2.5
4,902,399	+		GFF4910	0.49	-1.7
4,902,408	+		GFF4910	0.50	+1.0
4,902,408	+		GFF4910	0.50	+0.4
4,902,408	+		GFF4910	0.50	+0.7
4,902,416	-		GFF4910	0.50	-2.2
4,902,503	+		GFF4910	0.58	-2.1
4,902,537	+		GFF4910	0.61	-0.3
4,902,561	+		GFF4910	0.63	-0.9
4,902,569	-		GFF4910	0.64	-0.2
4,902,569	-		GFF4910	0.64	-1.4
4,902,600	+		GFF4910	0.66	+0.2
4,902,603	-		GFF4910	0.66	-0.2
4,902,615	-		GFF4910	0.68	-0.3
4,902,650	+		GFF4910	0.71	-1.7
4,902,650	+		GFF4910	0.71	-1.5
4,902,651	-		GFF4910	0.71	-0.2
4,902,658	-		GFF4910	0.71	+0.4
4,902,680	+		GFF4910	0.73	-0.9
4,902,680	+		GFF4910	0.73	+0.5
4,902,680	+		GFF4910	0.73	+0.7
4,902,680	+		GFF4910	0.73	-0.9
4,902,688	-		GFF4910	0.74	-0.3
4,902,690	+		GFF4910	0.74	-0.5
4,902,690	+		GFF4910	0.74	+0.7
4,902,690	+		GFF4910	0.74	-1.0
4,902,690	+		GFF4910	0.74	-0.7
4,902,698	-		GFF4910	0.75	-0.4
4,902,698	-		GFF4910	0.75	-1.1
4,902,698	-		GFF4910	0.75	+0.2
4,902,698	-		GFF4910	0.75	-0.1
4,902,698	-		GFF4910	0.75	-0.2
4,902,705	+		GFF4910	0.75	-0.4
4,902,708	-		GFF4910	0.76	-0.1
4,902,755	+		GFF4910	0.80	+0.2
4,902,763	+		GFF4910	0.80	-0.3
4,902,763	+		GFF4910	0.80	-0.0
4,902,784	+		GFF4910	0.82	+0.0
4,902,800	-		GFF4910	0.84	-0.4
4,902,800	-		GFF4910	0.84	-1.1
4,902,815	+		GFF4910	0.85	-1.0
4,902,822	+		GFF4910	0.86	-0.3
4,902,822	+		GFF4910	0.86	+0.4
4,902,828	+		GFF4910	0.86	-1.7
4,902,828	+		GFF4910	0.86	-0.8
4,902,836	-		GFF4910	0.87	-0.1
4,902,838	+		GFF4910	0.87	-1.9
4,902,849	+		GFF4910	0.88	-0.9
4,902,849	+		GFF4910	0.88	-1.3
4,902,851	+		GFF4910	0.88	-1.2
4,902,854	+		GFF4910	0.88	-1.7
4,902,876	-				-0.9
4,902,886	-				+0.5
4,902,890	+				-0.6
4,902,890	+				-0.9
4,902,890	+				-1.0
4,902,890	+				-0.7
4,902,890	+				+0.4
4,902,890	+				-0.2
4,902,890	+				-1.2
4,902,890	+				+0.2
4,902,890	+				+0.3
4,902,890	+				-1.7
4,902,898	-				-0.7
4,902,898	-				-0.2
4,902,898	-				-3.1
4,902,898	-				-1.7
4,902,898	-				-0.6
4,902,898	-				+1.7
4,902,898	-				-0.9
4,902,921	+				+0.5
4,902,938	+				-1.0
4,902,946	-				+0.1
4,902,951	+				-0.9
4,902,971	+				-0.3
4,902,971	+				-1.9
4,902,979	-				-1.7
4,902,979	-				-1.1
4,902,979	-				-0.6
4,902,998	+				-1.7
4,902,998	+				-1.8
4,902,998	+				-1.4
4,903,008	-				+0.2
4,903,029	+				-0.1
4,903,032	-				-1.0
4,903,051	-				-1.6
4,903,054	-				-0.2
4,903,088	+				-2.2
4,903,093	+				-1.8
4,903,093	+				-0.1
4,903,101	-				-1.8
4,903,121	-				-0.1
4,903,132	+				-0.8
4,903,182	+				+0.6
4,903,182	+				+0.7
4,903,196	-				-1.1
4,903,196	-				-1.7
4,903,202	-				-0.3
4,903,202	-				-1.0
4,903,208	-		GFF4911	0.11	+0.0
4,903,208	-		GFF4911	0.11	-1.4
4,903,226	-		GFF4911	0.13	-1.7
4,903,232	+		GFF4911	0.13	-0.6
4,903,239	+		GFF4911	0.14	-2.1
4,903,250	+		GFF4911	0.15	-1.7
4,903,250	+		GFF4911	0.15	-0.8
4,903,252	-		GFF4911	0.16	-1.0
4,903,258	-		GFF4911	0.16	-1.2
4,903,258	-		GFF4911	0.16	-1.4
4,903,258	-		GFF4911	0.16	-3.2
4,903,258	-		GFF4911	0.16	+0.0
4,903,276	+		GFF4911	0.18	-1.2
4,903,276	+		GFF4911	0.18	+0.8
4,903,276	+		GFF4911	0.18	+0.5
4,903,281	+		GFF4911	0.19	+1.0
4,903,286	+		GFF4911	0.20	-0.4
4,903,294	-		GFF4911	0.21	+0.1
4,903,294	-		GFF4911	0.21	-0.8
4,903,294	-		GFF4911	0.21	-0.7
4,903,311	+		GFF4911	0.22	+0.7
4,903,311	+		GFF4911	0.22	-1.1
4,903,311	+		GFF4911	0.22	-0.1
4,903,311	+		GFF4911	0.22	-0.2
4,903,311	+		GFF4911	0.22	+1.3
4,903,319	-		GFF4911	0.23	-0.1
4,903,319	-		GFF4911	0.23	-0.1
4,903,319	-		GFF4911	0.23	-0.5
4,903,319	-		GFF4911	0.23	-0.7
4,903,322	+		GFF4911	0.24	+1.0
4,903,356	+		GFF4911	0.28	+0.1
4,903,356	+		GFF4911	0.28	-1.0
4,903,359	+		GFF4911	0.28	+0.9
4,903,367	-		GFF4911	0.29	-0.8
4,903,475	+		GFF4911	0.41	-0.2
4,903,475	+		GFF4911	0.41	-1.1
4,903,476	-		GFF4911	0.42	-0.6
4,903,519	+		GFF4911	0.46	-1.0
4,903,532	-		GFF4911	0.48	+0.6
4,903,532	-		GFF4911	0.48	-1.2
4,903,532	-		GFF4911	0.48	-2.4
4,903,534	+		GFF4911	0.48	+1.6
4,903,537	-		GFF4911	0.49	+0.4
4,903,537	-		GFF4911	0.49	-0.4
4,903,539	+		GFF4911	0.49	-0.6
4,903,539	+		GFF4911	0.49	-1.4
4,903,542	-		GFF4911	0.49	+0.3
4,903,542	-		GFF4911	0.49	-0.7
4,903,547	-		GFF4911	0.50	-1.8
4,903,554	+		GFF4911	0.51	-1.3
4,903,560	-		GFF4911	0.51	-0.4
4,903,575	+		GFF4911	0.53	-0.6
4,903,681	-		GFF4911	0.65	+0.5
4,903,686	-		GFF4911	0.66	-1.0
4,903,696	+		GFF4911	0.67	+0.2
4,903,696	+		GFF4911	0.67	-1.6
4,903,696	+		GFF4911	0.67	-0.3
4,903,696	+		GFF4911	0.67	+0.9
4,903,696	+		GFF4911	0.67	-2.1
4,903,702	-		GFF4911	0.68	-1.7
4,903,702	-		GFF4911	0.68	+0.5
4,903,704	-		GFF4911	0.68	+0.0
4,903,704	-		GFF4911	0.68	-0.5
4,903,704	-		GFF4911	0.68	+0.3
4,903,704	-		GFF4911	0.68	-0.9
4,903,704	-		GFF4911	0.68	-0.1
4,903,704	-		GFF4911	0.68	-1.1
4,903,704	-		GFF4911	0.68	+0.3
4,903,704	-		GFF4911	0.68	+0.1
4,903,704	-		GFF4911	0.68	-0.7
4,903,710	+		GFF4911	0.69	-0.1
4,903,710	+		GFF4911	0.69	-0.8
4,903,710	+		GFF4911	0.69	+0.5
4,903,710	+		GFF4911	0.69	-2.6
4,903,715	+		GFF4911	0.69	-0.8
4,903,715	+		GFF4911	0.69	-1.7
4,903,718	-		GFF4911	0.69	-1.0
4,903,732	+		GFF4911	0.71	-0.3
4,903,732	+		GFF4911	0.71	-2.4
4,903,732	+		GFF4911	0.71	-1.2
4,903,740	-		GFF4911	0.72	+1.1
4,903,740	-		GFF4911	0.72	+0.3
4,903,742	+		GFF4911	0.72	-1.4
4,903,745	-		GFF4911	0.73	-0.8
4,903,757	+		GFF4911	0.74	-0.4
4,903,790	+		GFF4911	0.78	-0.4
4,903,792	+		GFF4911	0.78	+0.1
4,903,799	+		GFF4911	0.79	+0.2
4,903,800	-		GFF4911	0.79	-0.2
4,903,800	-		GFF4911	0.79	-0.9
4,903,802	+		GFF4911	0.79	+0.0
4,903,812	+		GFF4911	0.80	-2.7
4,903,826	-		GFF4911	0.82	-0.4
4,903,828	+		GFF4911	0.82	+0.3
4,903,836	-		GFF4911	0.83	-0.4
4,903,836	-		GFF4911	0.83	-1.6
4,903,837	+		GFF4911	0.83	-0.7
4,903,841	+		GFF4911	0.84	+0.7
4,903,841	+		GFF4911	0.84	-1.3
4,903,843	-		GFF4911	0.84	-1.7
4,903,845	-		GFF4911	0.84	-0.2
4,903,849	-		GFF4911	0.85	+0.3
4,903,909	+				+0.1
4,903,927	+				+0.0
4,903,927	+				-0.6
4,903,974	-				-2.6
4,903,979	-				-0.2
4,903,987	+				+0.4
4,903,995	-				+0.3
4,904,012	-				-1.7
4,904,028	+				-1.3
4,904,050	-				-0.5
4,904,073	+				-0.3
4,904,073	+				-1.3
4,904,088	-				-1.1
4,904,094	-				+0.1
4,904,115	+				-0.7
4,904,115	+				-0.0
4,904,123	-				-0.9
4,904,125	-				+0.1
4,904,135	-				-0.5
4,904,135	-				-0.2
4,904,136	+				-1.7
4,904,137	+				-0.2
4,904,144	-				-0.3
4,904,146	+				-0.9
4,904,156	+				-1.0
4,904,164	-				-3.2
4,904,164	-				-1.7
4,904,165	+				-1.3
4,904,166	+				+0.4
4,904,168	-				-2.4
4,904,168	-				-0.8
4,904,173	-				-0.7
4,904,173	-				-0.1
4,904,173	-				+0.2
4,904,183	-				-0.1
4,904,195	+				-0.7
4,904,195	+				-0.0
4,904,200	+				-1.2
4,904,200	+				-1.7
4,904,200	+				-0.3
4,904,200	+				-1.4
4,904,200	+				-2.2
4,904,200	+				+0.0
4,904,200	+				-0.1
4,904,200	+				-0.3
4,904,200	+				-1.0
4,904,200	+				+1.0
4,904,208	-				-0.0
4,904,208	-				-1.3
4,904,208	-				-1.2
4,904,208	-				-0.4
4,904,208	-				-1.8
4,904,208	-				-0.9
4,904,248	+		GFF4912	0.14	-1.5
4,904,266	+		GFF4912	0.16	-1.3
4,904,268	+		GFF4912	0.16	+0.7
4,904,272	+		GFF4912	0.17	-0.3
4,904,285	+		GFF4912	0.18	-0.6
4,904,314	-		GFF4912	0.22	-0.1
4,904,324	-		GFF4912	0.23	-1.9
4,904,325	-		GFF4912	0.23	-0.4
4,904,331	+		GFF4912	0.24	-0.2
4,904,339	-		GFF4912	0.25	+0.3
4,904,352	+		GFF4912	0.27	-1.6
4,904,367	-		GFF4912	0.28	-0.5
4,904,386	+		GFF4912	0.31	-0.0
4,904,435	-		GFF4912	0.37	+0.4
4,904,457	+		GFF4912	0.39	-1.8
4,904,471	+		GFF4912	0.41	-1.7
4,904,471	+		GFF4912	0.41	-0.4
4,904,477	+		GFF4912	0.42	+0.1
4,904,486	+		GFF4912	0.43	-1.8
4,904,489	-		GFF4912	0.43	-0.0
4,904,507	+		GFF4912	0.45	-1.0
4,904,507	+		GFF4912	0.45	-2.6
4,904,507	+		GFF4912	0.45	-1.8
4,904,507	+		GFF4912	0.45	-0.7
4,904,507	+		GFF4912	0.45	-2.0
4,904,507	+		GFF4912	0.45	-0.5
4,904,514	-		GFF4912	0.46	-1.1
4,904,515	-		GFF4912	0.46	+0.4
4,904,515	-		GFF4912	0.46	+0.1
4,904,515	-		GFF4912	0.46	-2.2
4,904,515	-		GFF4912	0.46	+0.8
4,904,515	-		GFF4912	0.46	-0.3
4,904,515	-		GFF4912	0.46	-1.4
4,904,515	-		GFF4912	0.46	-0.4
4,904,517	+		GFF4912	0.47	-0.8
4,904,540	-		GFF4912	0.49	-0.9
4,904,540	-		GFF4912	0.49	+0.7
4,904,573	+		GFF4912	0.53	-1.8
4,904,573	-		GFF4912	0.53	-0.1
4,904,577	+		GFF4912	0.54	+0.7
4,904,577	+		GFF4912	0.54	+0.6
4,904,578	-		GFF4912	0.54	-2.0
4,904,585	-		GFF4912	0.55	-1.4
4,904,592	+		GFF4912	0.56	+1.0
4,904,609	-		GFF4912	0.58	-0.9
4,904,609	-		GFF4912	0.58	-1.4
4,904,630	-		GFF4912	0.60	-1.3
4,904,637	+		GFF4912	0.61	-2.4
4,904,637	+		GFF4912	0.61	-0.9
4,904,645	-		GFF4912	0.62	+0.1
4,904,654	+		GFF4912	0.63	-0.3
4,904,654	+		GFF4912	0.63	+0.2
4,904,667	-		GFF4912	0.65	-0.8
4,904,723	+		GFF4912	0.72	-1.6
4,904,729	-		GFF4912	0.72	-1.4
4,904,752	+		GFF4912	0.75	+0.1
4,904,760	-		GFF4912	0.76	+0.4
4,904,770	+		GFF4912	0.77	+1.3
4,904,777	-		GFF4912	0.78	-0.2
4,904,778	-		GFF4912	0.78	+0.0
4,904,798	+		GFF4912	0.81	-0.0
4,904,874	-				+0.1
4,904,874	-				+0.1
4,904,887	+				-1.3
4,904,891	+				+0.5
4,904,899	-				-0.6
4,904,929	-				-1.8
4,904,939	-				-0.2
4,904,940	+				-1.4
4,904,957	-				-0.8
4,904,959	+				+0.7
4,904,977	-				-2.1