Strain Fitness in Sphingobium sp. HT1-2 around GFF4904

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,894,585	+		GFF4903	0.42	-1.5
4,894,585	+		GFF4903	0.42	+0.2
4,894,585	+		GFF4903	0.42	-0.7
4,894,586	+		GFF4903	0.42	+0.8
4,894,593	-		GFF4903	0.42	+0.7
4,894,593	-		GFF4903	0.42	+0.2
4,894,593	-		GFF4903	0.42	+0.1
4,894,594	+		GFF4903	0.42	+0.3
4,894,602	-		GFF4903	0.43	+0.2
4,894,602	-		GFF4903	0.43	-1.9
4,894,604	+		GFF4903	0.43	+0.5
4,894,604	+		GFF4903	0.43	-2.0
4,894,604	+		GFF4903	0.43	-1.7
4,894,604	+		GFF4903	0.43	+1.0
4,894,604	+		GFF4903	0.43	-0.1
4,894,604	+		GFF4903	0.43	-0.6
4,894,604	+		GFF4903	0.43	-0.4
4,894,604	+		GFF4903	0.43	-1.4
4,894,604	+		GFF4903	0.43	-1.9
4,894,604	+		GFF4903	0.43	+0.4
4,894,604	+		GFF4903	0.43	-1.3
4,894,612	-		GFF4903	0.44	-0.1
4,894,612	-		GFF4903	0.44	-0.9
4,894,612	-		GFF4903	0.44	-0.1
4,894,612	-		GFF4903	0.44	+0.1
4,894,612	-		GFF4903	0.44	-1.0
4,894,612	-		GFF4903	0.44	-0.4
4,894,612	-		GFF4903	0.44	-0.9
4,894,612	-		GFF4903	0.44	+0.3
4,894,628	-		GFF4903	0.44	+0.9
4,894,630	+		GFF4903	0.45	-0.3
4,894,630	+		GFF4903	0.45	-0.6
4,894,630	+		GFF4903	0.45	-1.1
4,894,630	+		GFF4903	0.45	-0.6
4,894,631	-		GFF4903	0.45	+0.5
4,894,638	-		GFF4903	0.45	-1.0
4,894,638	-		GFF4903	0.45	-0.4
4,894,638	-		GFF4903	0.45	+0.2
4,894,640	-		GFF4903	0.45	-0.6
4,894,659	+		GFF4903	0.46	-0.2
4,894,665	+		GFF4903	0.47	-0.3
4,894,665	+		GFF4903	0.47	-0.8
4,894,673	-		GFF4903	0.47	+0.0
4,894,673	-		GFF4903	0.47	-0.7
4,894,698	-		GFF4903	0.49	+1.0
4,894,720	-		GFF4903	0.50	+0.7
4,894,812	+		GFF4903	0.55	-2.7
4,894,825	+		GFF4903	0.56	-0.5
4,894,833	-		GFF4903	0.57	-1.7
4,894,852	+		GFF4903	0.58	-0.8
4,894,857	+		GFF4903	0.58	-0.3
4,894,865	-		GFF4903	0.59	+0.1
4,894,887	+		GFF4903	0.60	-0.9
4,894,887	+		GFF4903	0.60	-1.4
4,894,894	+		GFF4903	0.60	-1.7
4,894,894	+		GFF4903	0.60	-0.2
4,894,894	+		GFF4903	0.60	-1.0
4,894,894	+		GFF4903	0.60	-1.6
4,894,894	+		GFF4903	0.60	-0.5
4,894,894	+		GFF4903	0.60	+0.9
4,894,894	+		GFF4903	0.60	-1.8
4,894,894	+		GFF4903	0.60	-1.1
4,894,894	+		GFF4903	0.60	-0.9
4,894,894	+		GFF4903	0.60	+0.1
4,894,895	-		GFF4903	0.60	-1.3
4,894,902	-		GFF4903	0.61	-1.4
4,894,902	-		GFF4903	0.61	-1.8
4,894,902	-		GFF4903	0.61	-1.0
4,894,902	-		GFF4903	0.61	-1.2
4,894,942	-		GFF4903	0.63	-0.3
4,894,949	+		GFF4903	0.64	-0.1
4,894,957	-		GFF4903	0.64	-0.2
4,894,977	-		GFF4903	0.65	+0.2
4,895,016	+		GFF4903	0.68	-2.2
4,895,017	+		GFF4903	0.68	-2.1
4,895,035	-		GFF4903	0.69	-1.0
4,895,044	+		GFF4903	0.69	-0.8
4,895,044	-		GFF4903	0.69	-0.1
4,895,054	-		GFF4903	0.70	-0.4
4,895,082	+		GFF4903	0.72	-1.5
4,895,082	+		GFF4903	0.72	+0.5
4,895,083	+		GFF4903	0.72	-0.1
4,895,083	+		GFF4903	0.72	+0.4
4,895,086	-		GFF4903	0.72	-0.3
4,895,090	-		GFF4903	0.72	-0.4
4,895,097	+		GFF4903	0.72	-0.8
4,895,105	-		GFF4903	0.73	+0.1
4,895,105	-		GFF4903	0.73	+0.2
4,895,133	+		GFF4903	0.75	-0.5
4,895,133	+		GFF4903	0.75	-1.0
4,895,138	+		GFF4903	0.75	+0.6
4,895,141	-		GFF4903	0.75	+0.5
4,895,141	-		GFF4903	0.75	-0.1
4,895,157	+		GFF4903	0.76	+0.3
4,895,170	-		GFF4903	0.77	+0.1
4,895,183	+		GFF4903	0.78	+0.3
4,895,183	+		GFF4903	0.78	-0.6
4,895,183	+		GFF4903	0.78	-0.9
4,895,183	+		GFF4903	0.78	+0.7
4,895,183	+		GFF4903	0.78	+0.3
4,895,183	+		GFF4903	0.78	+0.2
4,895,183	+		GFF4903	0.78	+0.1
4,895,191	-		GFF4903	0.78	+1.5
4,895,191	-		GFF4903	0.78	+0.2
4,895,191	-		GFF4903	0.78	-2.7
4,895,191	-		GFF4903	0.78	+0.2
4,895,191	-		GFF4903	0.78	-0.5
4,895,191	-		GFF4903	0.78	-1.6
4,895,191	-		GFF4903	0.78	-2.0
4,895,194	+		GFF4903	0.78	-1.1
4,895,200	+		GFF4903	0.79	+0.4
4,895,204	+		GFF4903	0.79	-0.9
4,895,207	-		GFF4903	0.79	-2.9
4,895,213	+		GFF4903	0.79	-1.4
4,895,228	+		GFF4903	0.80	+0.3
4,895,236	-		GFF4903	0.81	-2.1
4,895,238	-		GFF4903	0.81	-0.6
4,895,239	+		GFF4903	0.81	-0.4
4,895,239	+		GFF4903	0.81	-1.8
4,895,239	+		GFF4903	0.81	+1.1
4,895,247	-		GFF4903	0.81	+1.0
4,895,283	-		GFF4903	0.84	-0.6
4,895,283	-		GFF4903	0.84	+0.2
4,895,287	+		GFF4903	0.84	-0.5
4,895,288	-		GFF4903	0.84	+0.9
4,895,316	+		GFF4903	0.86	-2.4
4,895,329	+		GFF4903	0.86	-1.7
4,895,335	+		GFF4903	0.87	-0.2
4,895,337	-		GFF4903	0.87	+0.3
4,895,340	+		GFF4903	0.87	-0.9
4,895,343	-		GFF4903	0.87	-1.0
4,895,343	-		GFF4903	0.87	+0.4
4,895,345	+		GFF4903	0.87	-0.1
4,895,353	-		GFF4903	0.88	-2.7
4,895,356	+		GFF4903	0.88	-0.8
4,895,374	+		GFF4903	0.89	-0.4
4,895,374	+		GFF4903	0.89	+1.1
4,895,374	+		GFF4903	0.89	-0.2
4,895,374	+		GFF4903	0.89	-1.7
4,895,379	+		GFF4903	0.89	+0.4
4,895,379	+		GFF4903	0.89	-2.6
4,895,382	-		GFF4903	0.89	-1.7
4,895,382	-		GFF4903	0.89	-0.1
4,895,387	-		GFF4903	0.90	-1.4
4,895,404	+				-0.3
4,895,404	+				-2.4
4,895,431	+				-2.2
4,895,455	+				-0.3
4,895,455	+				-0.2
4,895,455	+				-1.4
4,895,455	+				-1.3
4,895,455	+				-0.2
4,895,455	+				-0.2
4,895,455	+				-0.4
4,895,455	+				-0.7
4,895,455	+				-0.7
4,895,455	+				-0.6
4,895,455	+				+0.5
4,895,459	+				-2.0
4,895,463	-				-0.0
4,895,463	-				-0.2
4,895,463	-				-0.6
4,895,463	-				+0.4
4,895,463	-				-0.6
4,895,463	-				+0.0
4,895,463	-				-0.1
4,895,463	-				-1.4
4,895,463	-				+0.0
4,895,463	-				-1.3
4,895,463	-				-0.5
4,895,463	-				-1.8
4,895,463	-				-0.0
4,895,463	-				-0.7
4,895,465	+				-0.3
4,895,474	+				-1.3
4,895,480	+				+0.1
4,895,484	+				-1.7
4,895,500	+				-1.9
4,895,501	+				-0.9
4,895,507	+				-1.8
4,895,510	-				-0.0
4,895,516	-				-0.8
4,895,520	+				+0.1
4,895,531	+				-0.7
4,895,542	+				-1.7
4,895,554	+				+0.2
4,895,562	-				-0.7
4,895,590	+				-2.2
4,895,598	-				-0.7
4,895,651	-				+0.9
4,895,664	+		GFF4904	0.10	-1.8
4,895,692	+		GFF4904	0.13	-3.2
4,895,701	+		GFF4904	0.14	-1.8
4,895,701	+		GFF4904	0.14	-1.7
4,895,701	+		GFF4904	0.14	+1.2
4,895,704	-		GFF4904	0.14	+0.5
4,895,709	-		GFF4904	0.15	-0.3
4,895,709	-		GFF4904	0.15	-0.7
4,895,709	-		GFF4904	0.15	+0.4
4,895,723	+		GFF4904	0.16	-0.4
4,895,723	+		GFF4904	0.16	-0.6
4,895,724	-		GFF4904	0.16	-1.8
4,895,731	-		GFF4904	0.17	-0.1
4,895,731	-		GFF4904	0.17	-0.7
4,895,751	-		GFF4904	0.19	-0.6
4,895,757	+		GFF4904	0.20	-0.4
4,895,765	-		GFF4904	0.21	-0.2
4,895,765	-		GFF4904	0.21	-1.4
4,895,767	+		GFF4904	0.21	+0.7
4,895,767	+		GFF4904	0.21	+0.9
4,895,772	+		GFF4904	0.21	+1.0
4,895,772	+		GFF4904	0.21	+0.2
4,895,772	+		GFF4904	0.21	-1.7
4,895,772	+		GFF4904	0.21	-2.0
4,895,772	+		GFF4904	0.21	-0.1
4,895,780	-		GFF4904	0.22	+0.4
4,895,780	-		GFF4904	0.22	-1.0
4,895,780	-		GFF4904	0.22	+0.0
4,895,780	-		GFF4904	0.22	+0.2
4,895,780	-		GFF4904	0.22	-1.0
4,895,780	-		GFF4904	0.22	-0.1
4,895,815	-		GFF4904	0.26	-0.9
4,895,815	-		GFF4904	0.26	+0.2
4,895,815	-		GFF4904	0.26	+0.4
4,895,816	+		GFF4904	0.26	-2.7
4,895,817	+		GFF4904	0.26	-0.7
4,895,824	-		GFF4904	0.27	-0.6
4,895,832	-		GFF4904	0.27	-0.9
4,895,832	-		GFF4904	0.27	-0.5
4,895,848	+		GFF4904	0.29	+0.0
4,895,848	+		GFF4904	0.29	-1.7
4,895,848	+		GFF4904	0.29	-2.3
4,895,848	+		GFF4904	0.29	-0.0
4,895,848	+		GFF4904	0.29	+0.7
4,895,856	-		GFF4904	0.30	-2.2
4,895,856	-		GFF4904	0.30	-0.9
4,895,856	-		GFF4904	0.30	-1.5
4,895,860	+		GFF4904	0.30	+0.2
4,895,862	-		GFF4904	0.30	-0.6
4,895,879	-		GFF4904	0.32	-1.1
4,895,879	-		GFF4904	0.32	-2.4
4,895,879	-		GFF4904	0.32	-0.4
4,895,886	-		GFF4904	0.33	-0.9
4,895,898	+		GFF4904	0.34	+0.7
4,895,906	-		GFF4904	0.35	+0.3
4,895,932	-		GFF4904	0.38	-2.1
4,895,932	-		GFF4904	0.38	+0.3
4,895,933	+		GFF4904	0.38	+0.6
4,895,941	-		GFF4904	0.38	+0.3
4,895,943	+		GFF4904	0.39	-0.9
4,895,943	+		GFF4904	0.39	-0.4
4,895,951	-		GFF4904	0.39	-0.3
4,895,951	-		GFF4904	0.39	+0.9
4,895,961	-		GFF4904	0.40	-0.2
4,895,965	+		GFF4904	0.41	+0.1
4,895,979	+		GFF4904	0.42	-0.8
4,896,038	+		GFF4904	0.48	+1.0
4,896,038	+		GFF4904	0.48	-0.1
4,896,038	+		GFF4904	0.48	-0.1
4,896,046	-		GFF4904	0.49	-2.4
4,896,046	-		GFF4904	0.49	-1.5
4,896,046	-		GFF4904	0.49	-0.0
4,896,046	-		GFF4904	0.49	-0.8
4,896,046	-		GFF4904	0.49	-0.1
4,896,046	-		GFF4904	0.49	+0.3
4,896,046	-		GFF4904	0.49	-1.3
4,896,048	+		GFF4904	0.49	-0.9
4,896,048	+		GFF4904	0.49	-0.6
4,896,048	+		GFF4904	0.49	-1.1
4,896,048	+		GFF4904	0.49	-1.8
4,896,056	-		GFF4904	0.50	+0.4
4,896,056	-		GFF4904	0.50	-0.8
4,896,056	-		GFF4904	0.50	-1.4
4,896,056	-		GFF4904	0.50	+0.1
4,896,064	+		GFF4904	0.51	-0.7
4,896,094	+		GFF4904	0.54	-1.0
4,896,105	+		GFF4904	0.55	-0.8
4,896,105	+		GFF4904	0.55	-2.5
4,896,105	+		GFF4904	0.55	-0.1
4,896,105	+		GFF4904	0.55	+0.0
4,896,105	+		GFF4904	0.55	+0.5
4,896,105	+		GFF4904	0.55	-2.1
4,896,105	+		GFF4904	0.55	+0.6
4,896,105	+		GFF4904	0.55	-2.3
4,896,111	+		GFF4904	0.56	-0.2
4,896,113	-		GFF4904	0.56	-0.8
4,896,113	-		GFF4904	0.56	+0.3
4,896,113	-		GFF4904	0.56	-0.5
4,896,113	-		GFF4904	0.56	-2.1
4,896,113	-		GFF4904	0.56	-0.9
4,896,113	-		GFF4904	0.56	+0.8
4,896,113	-		GFF4904	0.56	-0.1
4,896,113	-		GFF4904	0.56	-0.6
4,896,113	-		GFF4904	0.56	+0.8
4,896,113	-		GFF4904	0.56	+0.1
4,896,122	+		GFF4904	0.57	-1.0
4,896,122	+		GFF4904	0.57	-2.3
4,896,124	+		GFF4904	0.57	-0.8
4,896,130	-		GFF4904	0.58	-0.3
4,896,135	-		GFF4904	0.58	-1.1
4,896,140	+		GFF4904	0.59	-0.9
4,896,148	-		GFF4904	0.59	-2.7
4,896,148	-		GFF4904	0.59	-1.5
4,896,158	-		GFF4904	0.60	+0.1
4,896,191	+		GFF4904	0.64	-0.0
4,896,191	+		GFF4904	0.64	+0.7
4,896,199	-		GFF4904	0.65	+0.0
4,896,201	-		GFF4904	0.65	-2.0
4,896,213	+		GFF4904	0.66	+0.1
4,896,221	-		GFF4904	0.67	-2.1
4,896,227	+		GFF4904	0.67	+0.2
4,896,227	+		GFF4904	0.67	-0.0
4,896,227	+		GFF4904	0.67	-1.7
4,896,227	+		GFF4904	0.67	+0.1
4,896,227	+		GFF4904	0.67	-2.0
4,896,235	-		GFF4904	0.68	-2.4
4,896,235	-		GFF4904	0.68	-2.3
4,896,235	-		GFF4904	0.68	-0.4
4,896,235	-		GFF4904	0.68	-0.1
4,896,242	+		GFF4904	0.69	-1.7
4,896,242	+		GFF4904	0.69	+0.4
4,896,242	+		GFF4904	0.69	-0.7
4,896,242	+		GFF4904	0.69	+0.4
4,896,250	-		GFF4904	0.70	-2.8
4,896,250	-		GFF4904	0.70	+0.1
4,896,250	-		GFF4904	0.70	-0.3
4,896,250	-		GFF4904	0.70	-1.1
4,896,250	-		GFF4904	0.70	+0.2
4,896,252	+		GFF4904	0.70	-0.2
4,896,252	+		GFF4904	0.70	-2.1
4,896,265	-		GFF4904	0.71	-1.2
4,896,265	-		GFF4904	0.71	-1.2
4,896,276	+		GFF4904	0.72	-0.3
4,896,278	+		GFF4904	0.73	+0.5
4,896,284	-		GFF4904	0.73	-0.4
4,896,284	-		GFF4904	0.73	-1.7
4,896,284	-		GFF4904	0.73	+0.5
4,896,284	-		GFF4904	0.73	-1.3
4,896,284	-		GFF4904	0.73	+0.4
4,896,284	-		GFF4904	0.73	-0.1
4,896,286	+		GFF4904	0.73	-0.2
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