Strain Fitness in Sphingobium sp. HT1-2 around GFF4855

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,840,196	-		GFF4854	0.70	+1.3
4,840,253	+		GFF4854	0.72	+0.6
4,840,262	-		GFF4854	0.72	+0.1
4,840,276	+		GFF4854	0.73	-1.7
4,840,324	+		GFF4854	0.74	+0.6
4,840,324	+		GFF4854	0.74	-1.0
4,840,331	+		GFF4854	0.74	+0.7
4,840,334	-		GFF4854	0.74	+0.4
4,840,348	-		GFF4854	0.75	-0.8
4,840,367	-		GFF4854	0.75	+1.5
4,840,381	+		GFF4854	0.76	+0.6
4,840,405	+		GFF4854	0.76	+0.8
4,840,412	+		GFF4854	0.77	+0.3
4,840,413	-		GFF4854	0.77	+0.8
4,840,413	-		GFF4854	0.77	-2.1
4,840,427	-		GFF4854	0.77	-0.8
4,840,427	-		GFF4854	0.77	+0.9
4,840,435	+		GFF4854	0.77	+0.1
4,840,453	-		GFF4854	0.78	+0.3
4,840,455	+		GFF4854	0.78	+0.4
4,840,465	+		GFF4854	0.78	+0.6
4,840,465	+		GFF4854	0.78	+1.9
4,840,465	+		GFF4854	0.78	-0.0
4,840,465	+		GFF4854	0.78	-0.2
4,840,465	+		GFF4854	0.78	+0.7
4,840,473	-		GFF4854	0.79	-0.9
4,840,473	-		GFF4854	0.79	-1.0
4,840,476	+		GFF4854	0.79	+0.6
4,840,484	-		GFF4854	0.79	-0.0
4,840,484	-		GFF4854	0.79	+0.5
4,840,513	-		GFF4854	0.80	-0.3
4,840,547	-		GFF4854	0.81	+0.4
4,840,580	+		GFF4854	0.82	-0.3
4,840,580	+		GFF4854	0.82	-1.0
4,840,580	+		GFF4854	0.82	-0.4
4,840,580	+		GFF4854	0.82	+0.4
4,840,588	-		GFF4854	0.82	+0.4
4,840,588	-		GFF4854	0.82	+0.2
4,840,588	-		GFF4854	0.82	-0.3
4,840,615	+		GFF4854	0.83	-2.3
4,840,646	+		GFF4854	0.84	+0.5
4,840,695	-		GFF4854	0.85	+0.3
4,840,709	+		GFF4854	0.86	+0.1
4,840,710	+		GFF4854	0.86	+1.3
4,840,714	+		GFF4854	0.86	+0.7
4,840,734	-		GFF4854	0.86	+0.5
4,840,734	-		GFF4854	0.86	-1.1
4,840,746	+		GFF4854	0.87	-1.5
4,840,763	+		GFF4854	0.87	+0.5
4,840,800	+		GFF4854	0.88	-1.7
4,840,804	-		GFF4854	0.88	+0.6
4,840,805	-		GFF4854	0.89	-1.3
4,840,811	+		GFF4854	0.89	+0.9
4,840,819	-		GFF4854	0.89	-0.3
4,840,821	+		GFF4854	0.89	-0.5
4,840,825	+		GFF4854	0.89	+0.7
4,840,829	-		GFF4854	0.89	-0.3
4,840,835	+		GFF4854	0.89	+1.2
4,840,840	+		GFF4854	0.90	+1.4
4,840,840	+		GFF4854	0.90	+1.0
4,840,840	+		GFF4854	0.90	+0.0
4,840,843	-		GFF4854	0.90	+1.5
4,840,848	-		GFF4854	0.90	+0.2
4,840,848	-		GFF4854	0.90	+0.9
4,840,848	-		GFF4854	0.90	-0.2
4,840,848	-		GFF4854	0.90	-2.1
4,840,848	-		GFF4854	0.90	+1.6
4,840,848	-		GFF4854	0.90	-1.6
4,840,858	-				-1.5
4,840,865	+				+1.4
4,840,865	+				-0.8
4,840,866	+				+0.9
4,840,883	-				-1.3
4,840,885	+				+0.9
4,840,898	-				-0.6
4,840,902	+				-1.1
4,840,909	+				+0.8
4,840,909	+				-1.7
4,840,912	-				+0.4
4,840,913	+				+0.5
4,840,917	-				+0.0
4,840,917	-				-2.1
4,840,934	+				+0.9
4,840,938	-				+1.3
4,840,940	+				+1.1
4,840,948	-				+0.3
4,840,948	-				+0.5
4,840,960	+				+0.6
4,841,002	-				-0.1
4,841,075	+				+0.4
4,841,077	-				-0.5
4,841,099	-				-0.2
4,841,112	-				-2.0
4,841,133	+				-1.4
4,841,145	+				+0.3
4,841,155	+				-1.7
4,841,163	-				-0.1
4,841,168	-				+0.0
4,841,185	+				-0.7
4,841,199	+				-0.1
4,841,199	+				+0.2
4,841,203	-				-0.5
4,841,207	-				-1.5
4,841,207	-				+0.6
4,841,207	-				+0.7
4,841,279	+				+0.4
4,841,321	-				+0.7
4,841,321	-				+1.6
4,841,343	+		GFF4855	0.11	+0.4
4,841,344	+		GFF4855	0.12	-0.0
4,841,356	-		GFF4855	0.12	-1.0
4,841,361	+		GFF4855	0.13	-1.2
4,841,361	+		GFF4855	0.13	-1.6
4,841,362	+		GFF4855	0.13	-2.0
4,841,369	+		GFF4855	0.13	+0.4
4,841,369	+		GFF4855	0.13	+1.2
4,841,370	-		GFF4855	0.13	+0.6
4,841,379	+		GFF4855	0.14	-0.6
4,841,379	+		GFF4855	0.14	+0.9
4,841,379	+		GFF4855	0.14	-0.2
4,841,421	+		GFF4855	0.17	+0.0
4,841,429	+		GFF4855	0.18	+0.7
4,841,429	-		GFF4855	0.18	+1.5
4,841,429	-		GFF4855	0.18	+0.6
4,841,429	-		GFF4855	0.18	+1.4
4,841,429	-		GFF4855	0.18	+1.6
4,841,429	-		GFF4855	0.18	-1.8
4,841,437	-		GFF4855	0.18	-1.6
4,841,457	+		GFF4855	0.20	-1.6
4,841,457	+		GFF4855	0.20	+1.5
4,841,457	+		GFF4855	0.20	-1.7
4,841,457	+		GFF4855	0.20	+0.1
4,841,462	+		GFF4855	0.20	+0.6
4,841,465	-		GFF4855	0.20	+0.9
4,841,465	-		GFF4855	0.20	+0.2
4,841,470	-		GFF4855	0.21	-0.6
4,841,483	+		GFF4855	0.21	-1.6
4,841,488	+		GFF4855	0.22	-0.0
4,841,488	+		GFF4855	0.22	+0.4
4,841,488	+		GFF4855	0.22	-0.9
4,841,488	+		GFF4855	0.22	+0.5
4,841,488	+		GFF4855	0.22	-0.5
4,841,491	-		GFF4855	0.22	-0.3
4,841,491	-		GFF4855	0.22	-1.1
4,841,491	-		GFF4855	0.22	+1.6
4,841,496	-		GFF4855	0.22	-0.3
4,841,496	-		GFF4855	0.22	+0.3
4,841,496	-		GFF4855	0.22	+0.0
4,841,496	-		GFF4855	0.22	+1.3
4,841,496	-		GFF4855	0.22	+1.4
4,841,501	-		GFF4855	0.23	+0.6
4,841,505	+		GFF4855	0.23	-0.5
4,841,505	+		GFF4855	0.23	-2.1
4,841,526	-		GFF4855	0.25	+0.7
4,841,527	-		GFF4855	0.25	-1.1
4,841,551	+		GFF4855	0.26	+0.3
4,841,559	-		GFF4855	0.27	-0.9
4,841,559	-		GFF4855	0.27	-0.0
4,841,559	-		GFF4855	0.27	+0.4
4,841,621	+		GFF4855	0.31	+0.1
4,841,621	+		GFF4855	0.31	+0.7
4,841,626	+		GFF4855	0.32	-0.7
4,841,629	-		GFF4855	0.32	-0.3
4,841,629	-		GFF4855	0.32	+0.6
4,841,634	-		GFF4855	0.32	+0.7
4,841,640	+		GFF4855	0.33	-1.0
4,841,645	+		GFF4855	0.33	-0.6
4,841,648	-		GFF4855	0.33	-0.4
4,841,648	-		GFF4855	0.33	-0.6
4,841,648	-		GFF4855	0.33	-0.7
4,841,653	-		GFF4855	0.34	-0.1
4,841,658	-		GFF4855	0.34	+0.0
4,841,672	-		GFF4855	0.35	+0.1
4,841,690	-		GFF4855	0.36	+0.4
4,841,705	+		GFF4855	0.37	-0.1
4,841,745	+		GFF4855	0.40	-0.4
4,841,747	-		GFF4855	0.40	+0.1
4,841,747	-		GFF4855	0.40	-0.6
4,841,747	-		GFF4855	0.40	+0.5
4,841,770	+		GFF4855	0.42	+1.9
4,841,774	+		GFF4855	0.42	-1.1
4,841,803	+		GFF4855	0.44	-0.6
4,841,803	-		GFF4855	0.44	+1.2
4,841,803	-		GFF4855	0.44	+0.3
4,841,803	-		GFF4855	0.44	-1.5
4,841,811	-		GFF4855	0.45	+0.6
4,841,813	-		GFF4855	0.45	+1.6
4,841,835	-		GFF4855	0.47	-1.5
4,841,853	+		GFF4855	0.48	+0.5
4,841,938	+		GFF4855	0.54	-1.0
4,841,944	+		GFF4855	0.54	+0.3
4,841,945	-		GFF4855	0.54	+0.9
4,841,966	-		GFF4855	0.56	+0.6
4,841,975	-		GFF4855	0.56	+0.4
4,841,975	-		GFF4855	0.56	-0.9
4,841,990	-		GFF4855	0.58	-0.8
4,842,013	+		GFF4855	0.59	+1.4
4,842,020	-		GFF4855	0.60	-0.2
4,842,020	-		GFF4855	0.60	-0.5
4,842,041	+		GFF4855	0.61	+0.0
4,842,043	-		GFF4855	0.61	+0.9
4,842,045	+		GFF4855	0.61	+0.5
4,842,053	-		GFF4855	0.62	-0.3
4,842,055	+		GFF4855	0.62	+0.3
4,842,099	-		GFF4855	0.65	+2.0
4,842,121	-		GFF4855	0.67	-1.5
4,842,121	-		GFF4855	0.67	+0.4
4,842,128	+		GFF4855	0.67	+0.1
4,842,134	+		GFF4855	0.68	+0.9
4,842,136	-		GFF4855	0.68	+0.2
4,842,142	-		GFF4855	0.68	-2.3
4,842,154	+		GFF4855	0.69	+0.4
4,842,182	+		GFF4855	0.71	+1.6
4,842,203	+		GFF4855	0.73	+0.4
4,842,211	-		GFF4855	0.73	+1.3
4,842,213	+		GFF4855	0.73	-0.0
4,842,221	-		GFF4855	0.74	-1.1
4,842,253	+		GFF4855	0.76	-0.8
4,842,255	-		GFF4855	0.76	-0.1
4,842,306	-		GFF4855	0.80	+0.2
4,842,310	+		GFF4855	0.80	-1.2
4,842,338	+		GFF4855	0.82	-1.0
4,842,338	+		GFF4855	0.82	-0.8
4,842,338	+		GFF4855	0.82	-0.3
4,842,338	+		GFF4855	0.82	+0.2
4,842,338	+		GFF4855	0.82	+0.2
4,842,338	+		GFF4855	0.82	-0.5
4,842,338	+		GFF4855	0.82	-1.5
4,842,338	+		GFF4855	0.82	-0.6
4,842,338	+		GFF4855	0.82	+1.0
4,842,338	+		GFF4855	0.82	-0.7
4,842,338	+		GFF4855	0.82	+1.6
4,842,338	+		GFF4855	0.82	-0.2
4,842,338	+		GFF4855	0.82	+1.1
4,842,338	+		GFF4855	0.82	-0.3
4,842,338	+		GFF4855	0.82	+0.9
4,842,338	+		GFF4855	0.82	+1.0
4,842,338	+		GFF4855	0.82	+0.2
4,842,338	+		GFF4855	0.82	-0.2
4,842,338	+		GFF4855	0.82	-0.1
4,842,338	+		GFF4855	0.82	-1.0
4,842,338	+		GFF4855	0.82	-0.3
4,842,346	-		GFF4855	0.83	+0.2
4,842,346	-		GFF4855	0.83	+0.3
4,842,346	-		GFF4855	0.83	+0.2
4,842,346	-		GFF4855	0.83	+1.0
4,842,346	-		GFF4855	0.83	-1.0
4,842,346	-		GFF4855	0.83	+0.6
4,842,346	-		GFF4855	0.83	+0.1
4,842,346	-		GFF4855	0.83	+0.8
4,842,346	-		GFF4855	0.83	-1.8
4,842,346	-		GFF4855	0.83	-2.4
4,842,346	-		GFF4855	0.83	+0.7
4,842,346	-		GFF4855	0.83	+0.4
4,842,346	-		GFF4855	0.83	+0.0
4,842,346	-		GFF4855	0.83	+0.0
4,842,348	-		GFF4855	0.83	-0.1
4,842,356	-		GFF4855	0.84	-0.4
4,842,367	-		GFF4855	0.84	-0.6
4,842,369	-		GFF4855	0.85	+0.0
4,842,369	-		GFF4855	0.85	+0.0
4,842,369	-		GFF4855	0.85	-1.0
4,842,369	-		GFF4855	0.85	+0.2
4,842,388	-		GFF4855	0.86	+1.1
4,842,392	+		GFF4855	0.86	-1.5
4,842,441	+		GFF4855	0.90	-2.0
4,842,441	+		GFF4855	0.90	-1.8
4,842,449	-				+1.4
4,842,453	+				-1.1
4,842,453	+				-0.4
4,842,461	-				+1.5
4,842,461	-				-1.3
4,842,472	+				+0.4
4,842,480	-				-2.3
4,842,482	+				+0.7
4,842,490	-				+0.7
4,842,490	-				+0.9
4,842,504	+				-0.3
4,842,512	-				+0.3
4,842,543	-				+1.0
4,842,552	+				-0.5
4,842,560	-				-1.5
4,842,560	-				+0.1
4,842,568	+				-0.5
4,842,604	+				+0.2
4,842,615	+				+0.7
4,842,617	-				-0.1
4,842,623	+				-0.5
4,842,625	+				+1.7
4,842,625	+				-0.1
4,842,655	-				+1.7
4,842,658	+				+0.4
4,842,666	-				-0.6
4,842,679	-				-0.2
4,842,717	-				+0.8
4,842,719	-				-2.4
4,842,741	+		GFF4856	0.11	+0.1
4,842,746	+		GFF4856	0.11	-1.3
4,842,746	+		GFF4856	0.11	+0.9
4,842,746	+		GFF4856	0.11	+0.2
4,842,751	+		GFF4856	0.12	-0.8
4,842,751	+		GFF4856	0.12	+0.5
4,842,751	+		GFF4856	0.12	+1.5
4,842,751	+		GFF4856	0.12	-0.7
4,842,754	+		GFF4856	0.13	+0.2
4,842,754	-		GFF4856	0.13	-0.4
4,842,759	-		GFF4856	0.13	+0.7
4,842,759	-		GFF4856	0.13	-1.7
4,842,820	+		GFF4856	0.22	+0.6
4,842,828	-		GFF4856	0.23	-1.7
4,842,828	-		GFF4856	0.23	+0.9
4,842,838	-		GFF4856	0.24	+1.3
4,842,847	+		GFF4856	0.25	+0.8
4,842,847	+		GFF4856	0.25	-1.4
4,842,855	-		GFF4856	0.26	-1.1
4,842,887	+		GFF4856	0.31	-1.7
4,842,923	+		GFF4856	0.36	-0.4
4,842,937	+		GFF4856	0.38	-0.1
4,842,959	-		GFF4856	0.41	+0.3
4,842,965	-		GFF4856	0.41	-1.7
4,842,994	-		GFF4856	0.45	+0.4
4,843,008	-		GFF4856	0.47	+0.2
4,843,018	+		GFF4856	0.49	-1.1
4,843,019	-		GFF4856	0.49	-0.2
4,843,033	+		GFF4856	0.51	-0.8
4,843,039	+		GFF4856	0.52	-0.6
4,843,043	-		GFF4856	0.52	-0.3
4,843,057	+		GFF4856	0.54	+0.9
4,843,057	-		GFF4856	0.54	+1.4
4,843,060	-		GFF4856	0.54	+0.4
4,843,060	-		GFF4856	0.54	-0.6
4,843,062	-		GFF4856	0.55	-2.1
4,843,065	-		GFF4856	0.55	-1.0
4,843,065	-		GFF4856	0.55	-1.6
4,843,065	-		GFF4856	0.55	+0.4
4,843,083	-		GFF4856	0.58	+0.4
4,843,093	+		GFF4856	0.59	-1.3
4,843,098	+		GFF4856	0.60	-1.4
4,843,104	+		GFF4856	0.60	-2.1
4,843,105	+		GFF4856	0.61	-0.5
4,843,105	+		GFF4856	0.61	+0.0
4,843,123	-		GFF4856	0.63	-1.0
4,843,123	-		GFF4856	0.63	+1.2
4,843,125	+		GFF4856	0.63	+1.6
4,843,143	-		GFF4856	0.66	-0.1
4,843,154	+		GFF4856	0.67	+0.5
4,843,154	+		GFF4856	0.67	+0.9
4,843,154	+		GFF4856	0.67	+1.2
4,843,154	+		GFF4856	0.67	+1.4
4,843,159	+		GFF4856	0.68	+0.6
4,843,159	+		GFF4856	0.68	+0.4
4,843,162	-		GFF4856	0.68	+0.5
4,843,162	-		GFF4856	0.68	-0.8
4,843,162	-		GFF4856	0.68	-0.5
4,843,167	-		GFF4856	0.69	+1.1
4,843,199	-		GFF4856	0.73	-2.0
4,843,199	-		GFF4856	0.73	-0.6
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