Strain Fitness in Sphingobium sp. HT1-2 around GFF4849

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,830,808	+		GFF4847	0.59	+0.0
4,830,808	+		GFF4847	0.59	+1.2
4,830,813	+		GFF4847	0.60	-1.3
4,830,813	+		GFF4847	0.60	+0.6
4,830,813	+		GFF4847	0.60	-0.4
4,830,813	+		GFF4847	0.60	+0.6
4,830,815	+		GFF4847	0.61	-0.3
4,830,821	-		GFF4847	0.62	-2.0
4,830,826	+		GFF4847	0.64	+0.1
4,830,826	+		GFF4847	0.64	-0.4
4,830,826	+		GFF4847	0.64	-0.0
4,830,834	-		GFF4847	0.66	+1.6
4,830,834	-		GFF4847	0.66	-1.1
4,830,835	-		GFF4847	0.66	+0.8
4,830,859	-		GFF4847	0.73	-0.1
4,830,874	+		GFF4847	0.78	+1.1
4,830,874	+		GFF4847	0.78	-0.3
4,830,886	+		GFF4847	0.81	-0.7
4,830,888	+		GFF4847	0.82	+0.2
4,830,908	-		GFF4847	0.88	+0.1
4,830,921	+				-0.4
4,830,924	-				-0.4
4,830,929	-				-1.9
4,830,945	+				+1.1
4,830,945	+				+1.3
4,830,945	+				+1.1
4,830,945	+				+1.0
4,830,953	-				-0.5
4,830,953	-				-2.0
4,830,953	-				-1.0
4,830,953	-				-1.0
4,830,953	-				-0.7
4,830,953	-				-0.3
4,830,953	-				-2.2
4,830,953	-				-1.7
4,830,953	-				+0.2
4,830,975	+				+0.1
4,830,981	+				+0.2
4,830,982	+				-0.1
4,830,983	-				-0.3
4,830,983	-				-1.1
4,830,983	-				-2.1
4,830,983	-				-1.0
4,830,999	+				+0.5
4,831,001	-				-1.2
4,831,007	-				-2.0
4,831,030	-				+0.0
4,831,046	+				+0.5
4,831,048	+				-0.7
4,831,063	-		GFF4848	0.14	-0.8
4,831,067	+		GFF4848	0.15	+0.4
4,831,068	+		GFF4848	0.16	-0.2
4,831,068	+		GFF4848	0.16	+0.9
4,831,068	+		GFF4848	0.16	-0.7
4,831,068	+		GFF4848	0.16	-1.6
4,831,068	+		GFF4848	0.16	+1.3
4,831,072	+		GFF4848	0.17	+1.2
4,831,076	-		GFF4848	0.18	-1.6
4,831,076	-		GFF4848	0.18	-0.1
4,831,076	-		GFF4848	0.18	-1.7
4,831,111	-		GFF4848	0.29	+0.6
4,831,121	+		GFF4848	0.32	-2.4
4,831,138	-		GFF4848	0.37	-1.6
4,831,155	+		GFF4848	0.42	+0.6
4,831,189	+		GFF4848	0.52	+0.9
4,831,194	+		GFF4848	0.53	+1.2
4,831,197	-		GFF4848	0.54	-0.8
4,831,197	-		GFF4848	0.54	-1.6
4,831,202	-		GFF4848	0.56	-0.1
4,831,202	-		GFF4848	0.56	-0.1
4,831,202	-		GFF4848	0.56	+0.4
4,831,203	+		GFF4848	0.56	+0.2
4,831,208	+		GFF4848	0.57	+0.3
4,831,213	+		GFF4848	0.59	+0.7
4,831,213	+		GFF4848	0.59	-0.8
4,831,216	-		GFF4848	0.60	-0.1
4,831,221	-		GFF4848	0.61	-2.1
4,831,221	-		GFF4848	0.61	-0.0
4,831,228	-		GFF4848	0.63	-0.1
4,831,262	-		GFF4848	0.74	+0.0
4,831,285	+		GFF4848	0.80	-0.3
4,831,312	+		GFF4848	0.88	+0.9
4,831,318	+				+0.4
4,831,328	-				-0.6
4,831,331	+				-0.7
4,831,331	+				+1.0
4,831,331	+				+0.9
4,831,331	+				+0.2
4,831,339	-				-0.7
4,831,339	-				-0.6
4,831,346	+				-0.1
4,831,346	+				-2.9
4,831,346	+				-1.3
4,831,354	-				-0.9
4,831,354	-				-0.1
4,831,354	-				-0.0
4,831,377	+				+0.4
4,831,377	+				-0.3
4,831,382	+				+1.2
4,831,382	+				-0.5
4,831,392	+				+0.6
4,831,397	+				+0.8
4,831,400	+				+1.0
4,831,400	+				+0.8
4,831,400	+				+0.0
4,831,400	+				+1.5
4,831,405	-				+1.4
4,831,408	-				-0.1
4,831,408	-				-2.3
4,831,419	-				-0.1
4,831,473	+				+0.2
4,831,473	+				-1.0
4,831,473	+				+1.4
4,831,473	+				-0.0
4,831,473	+				-0.8
4,831,473	+				+0.7
4,831,473	+				-0.5
4,831,473	-				-0.3
4,831,475	+				+0.6
4,831,479	+				-1.1
4,831,479	+				+0.2
4,831,481	-				-2.0
4,831,481	-				-2.1
4,831,486	+				-0.8
4,831,491	+				+0.9
4,831,491	+				-0.5
4,831,491	+				-0.3
4,831,491	+				-0.7
4,831,494	-				+0.9
4,831,496	+				-0.7
4,831,499	-				+0.7
4,831,499	-				+0.1
4,831,499	-				+0.2
4,831,502	+				-1.6
4,831,516	-				-0.5
4,831,564	-				-0.1
4,831,564	-				+0.0
4,831,564	-				-0.5
4,831,564	-				+0.1
4,831,579	+				+1.0
4,831,639	+				+0.1
4,831,646	+				-0.1
4,831,646	+				+1.2
4,831,654	-				+0.4
4,831,654	-				+0.5
4,831,654	-				-0.1
4,831,654	-				+0.9
4,831,654	-				-0.8
4,831,654	-				-0.3
4,831,664	-				-0.1
4,831,667	+				-1.5
4,831,667	+				+0.9
4,831,667	+				+0.7
4,831,675	-				-2.5
4,831,675	-				+0.2
4,831,675	-				+0.7
4,831,675	-				+1.2
4,831,690	-				+0.4
4,831,699	+				+1.5
4,831,733	+				-1.2
4,831,738	+				-0.1
4,831,738	+				+0.3
4,831,738	+				-1.1
4,831,746	-				+0.4
4,831,764	+				-0.5
4,831,770	-				+0.3
4,831,772	+				-0.7
4,831,772	+				-0.7
4,831,780	-				+0.4
4,831,780	-				-1.1
4,831,781	-				-0.8
4,831,799	-				-1.7
4,831,818	+				-0.6
4,831,837	+				+0.6
4,831,848	+				+0.7
4,831,850	+		GFF4849	0.10	+0.2
4,831,850	+		GFF4849	0.10	-0.4
4,831,856	-		GFF4849	0.12	-0.3
4,831,856	-		GFF4849	0.12	+0.7
4,831,858	-		GFF4849	0.12	-0.5
4,831,858	-		GFF4849	0.12	+0.8
4,831,863	-		GFF4849	0.14	+0.9
4,831,870	+		GFF4849	0.15	-0.2
4,831,873	-		GFF4849	0.16	-0.1
4,831,873	-		GFF4849	0.16	-0.3
4,831,886	+		GFF4849	0.19	-0.4
4,831,912	+		GFF4849	0.26	-0.6
4,831,920	-		GFF4849	0.28	+0.0
4,831,930	+		GFF4849	0.30	+0.9
4,831,936	+		GFF4849	0.32	-0.7
4,831,963	+		GFF4849	0.38	+0.4
4,831,976	+		GFF4849	0.41	+0.5
4,832,008	+		GFF4849	0.49	+0.1
4,832,027	+		GFF4849	0.54	+1.0
4,832,038	-		GFF4849	0.57	-0.7
4,832,039	+		GFF4849	0.57	-0.1
4,832,061	+		GFF4849	0.62	+1.0
4,832,061	+		GFF4849	0.62	-2.9
4,832,069	+		GFF4849	0.64	-1.4
4,832,077	-		GFF4849	0.66	+1.4
4,832,077	-		GFF4849	0.66	-1.1
4,832,082	+		GFF4849	0.68	+0.2
4,832,085	-		GFF4849	0.68	-1.0
4,832,087	+		GFF4849	0.69	+1.1
4,832,087	+		GFF4849	0.69	+1.1
4,832,087	+		GFF4849	0.69	-0.1
4,832,092	+		GFF4849	0.70	-0.3
4,832,100	-		GFF4849	0.72	-0.0
4,832,107	+		GFF4849	0.74	+0.3
4,832,115	-		GFF4849	0.76	-0.5
4,832,115	-		GFF4849	0.76	-0.6
4,832,132	+		GFF4849	0.80	-0.2
4,832,160	-		GFF4849	0.87	-1.4
4,832,182	-				-1.3
4,832,223	+				+1.4
4,832,273	+				-0.1
4,832,273	+				-0.7
4,832,273	+				-0.8
4,832,274	+				+0.0
4,832,279	+				+0.0
4,832,311	+				+1.4
4,832,312	+				-0.5
4,832,372	+				-0.2
4,832,380	-				+0.6
4,832,380	-				+1.1
4,832,386	-				-0.7
4,832,400	+				-1.3
4,832,400	+				+0.5
4,832,408	-				-1.8
4,832,408	-				+0.7
4,832,408	-				+0.1
4,832,440	+				-0.8
4,832,445	-				+0.0
4,832,452	+				-1.4
4,832,458	-				+0.4
4,832,483	-				+0.4
4,832,500	+				-0.8
4,832,500	+				-0.5
4,832,507	+				+1.3
4,832,508	-				+1.2
4,832,508	-				-1.0
4,832,508	-				-0.1
4,832,508	-				-0.5
4,832,508	-				+0.7
4,832,514	-				+0.7
4,832,514	-				-0.3
4,832,514	-				+1.5
4,832,514	-				+0.5
4,832,514	-				-2.0
4,832,554	+				+0.5
4,832,554	+				+0.8
4,832,554	+				-1.1
4,832,554	+				+1.0
4,832,554	+				+0.1
4,832,554	+				+0.2
4,832,554	+				-0.2
4,832,554	+				-0.2
4,832,562	-				+1.4
4,832,562	-				+0.7
4,832,562	-				-1.1
4,832,589	+				-0.6
4,832,589	+				-1.0
4,832,597	-				+1.1
4,832,619	-				-0.4
4,832,623	-				+0.5
4,832,626	+				+0.7
4,832,633	-				-0.6
4,832,645	-				-1.1
4,832,660	+				-1.1
4,832,660	+				+0.5
4,832,660	+				-1.0
4,832,660	+				+0.3
4,832,668	-				+0.9
4,832,668	-				-0.7
4,832,668	-				-0.9
4,832,668	-				+0.7
4,832,668	-				-0.1
4,832,683	-				+0.3
4,832,683	-				+0.2
4,832,683	-				-1.7
4,832,710	-				+1.4
4,832,730	+				-0.1
4,832,770	+				+0.2
4,832,775	+				-0.3
4,832,775	+				+0.2
4,832,786	+				+0.5
4,832,786	+				-0.9
4,832,789	-				-0.7
4,832,814	+		GFF4850	0.14	+0.3
4,832,816	-		GFF4850	0.14	-0.7
4,832,816	-		GFF4850	0.14	+0.1
4,832,818	-		GFF4850	0.15	-0.5
4,832,820	+		GFF4850	0.15	+0.9
4,832,830	+		GFF4850	0.18	-1.7
4,832,835	+		GFF4850	0.19	+0.3
4,832,843	-		GFF4850	0.21	+1.7
4,832,846	-		GFF4850	0.22	-0.6
4,832,855	+		GFF4850	0.24	-0.3
4,832,862	+		GFF4850	0.26	-0.4
4,832,865	+		GFF4850	0.27	-0.0
4,832,865	+		GFF4850	0.27	-0.0
4,832,873	-		GFF4850	0.29	+0.3
4,832,873	-		GFF4850	0.29	+0.3
4,832,875	-		GFF4850	0.29	+1.4
4,832,897	+		GFF4850	0.35	-1.8
4,832,905	-		GFF4850	0.37	+0.2
4,832,951	-		GFF4850	0.49	-0.7
4,832,954	+		GFF4850	0.50	+0.3
4,832,955	+		GFF4850	0.50	-0.5
4,832,955	+		GFF4850	0.50	-0.7
4,832,955	+		GFF4850	0.50	+0.7
4,832,963	-		GFF4850	0.52	-0.1
4,832,963	-		GFF4850	0.52	+1.1
4,832,963	-		GFF4850	0.52	+0.7
4,832,963	-		GFF4850	0.52	-0.5
4,833,014	+		GFF4850	0.66	+0.6
4,833,014	+		GFF4850	0.66	-0.0
4,833,014	+		GFF4850	0.66	-0.8
4,833,014	+		GFF4850	0.66	+0.3
4,833,014	+		GFF4850	0.66	-0.8
4,833,014	+		GFF4850	0.66	+0.4
4,833,015	-		GFF4850	0.66	-0.1
4,833,017	-		GFF4850	0.66	-0.1
4,833,017	-		GFF4850	0.66	+0.3
4,833,017	-		GFF4850	0.66	+1.0
4,833,022	-		GFF4850	0.68	-1.1
4,833,022	-		GFF4850	0.68	-0.5
4,833,022	-		GFF4850	0.68	-0.6
4,833,022	-		GFF4850	0.68	+1.0
4,833,022	-		GFF4850	0.68	+0.9
4,833,022	-		GFF4850	0.68	-0.1
4,833,022	-		GFF4850	0.68	-2.2
4,833,022	-		GFF4850	0.68	-1.6
4,833,022	-		GFF4850	0.68	+1.1
4,833,022	-		GFF4850	0.68	+0.2
4,833,024	+		GFF4850	0.68	-2.0
4,833,027	-		GFF4850	0.69	-1.1
4,833,027	-		GFF4850	0.69	-0.1
4,833,042	+		GFF4850	0.73	+0.9
4,833,047	+		GFF4850	0.74	-0.3
4,833,052	-		GFF4850	0.76	+0.0
4,833,054	-		GFF4850	0.76	+0.4
4,833,076	+		GFF4850	0.82	-0.8
4,833,076	+		GFF4850	0.82	-1.2
4,833,084	+		GFF4850	0.84	-0.4
4,833,112	+				+0.0
4,833,118	-				+0.9
4,833,124	-				+0.7
4,833,125	+				+0.4
4,833,133	-				-0.5
4,833,165	+				-1.3