Strain Fitness in Sphingobium sp. HT1-2 around GFF4680

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,676,198	+				-0.6
4,676,229	+				-1.0
4,676,234	+				+0.7
4,676,237	-				+0.6
4,676,243	-				-0.7
4,676,268	+		GFF4679	0.11	-0.2
4,676,273	-		GFF4679	0.11	-0.1
4,676,278	+		GFF4679	0.12	+0.6
4,676,293	+		GFF4679	0.13	+0.5
4,676,294	+		GFF4679	0.13	+0.6
4,676,312	+		GFF4679	0.15	+0.9
4,676,312	+		GFF4679	0.15	-0.6
4,676,312	+		GFF4679	0.15	-0.0
4,676,312	+		GFF4679	0.15	-1.0
4,676,312	+		GFF4679	0.15	-1.1
4,676,320	-		GFF4679	0.16	-1.8
4,676,320	-		GFF4679	0.16	-0.9
4,676,320	-		GFF4679	0.16	+1.2
4,676,320	-		GFF4679	0.16	+0.2
4,676,320	-		GFF4679	0.16	+0.9
4,676,326	+		GFF4679	0.16	+0.1
4,676,326	+		GFF4679	0.16	+1.4
4,676,326	+		GFF4679	0.16	+1.0
4,676,331	+		GFF4679	0.17	-0.2
4,676,331	+		GFF4679	0.17	-0.0
4,676,331	+		GFF4679	0.17	+1.4
4,676,369	+		GFF4679	0.21	+0.8
4,676,388	+		GFF4679	0.23	+0.8
4,676,393	+		GFF4679	0.23	-0.5
4,676,393	+		GFF4679	0.23	-0.8
4,676,401	-		GFF4679	0.24	-0.7
4,676,420	+		GFF4679	0.26	+0.3
4,676,428	-		GFF4679	0.26	+0.5
4,676,428	-		GFF4679	0.26	-1.5
4,676,428	-		GFF4679	0.26	+0.5
4,676,436	+		GFF4679	0.27	+1.5
4,676,436	+		GFF4679	0.27	+0.3
4,676,444	-		GFF4679	0.28	-0.8
4,676,444	-		GFF4679	0.28	-0.5
4,676,451	+		GFF4679	0.29	-0.9
4,676,454	-		GFF4679	0.29	+0.7
4,676,466	+		GFF4679	0.30	+0.7
4,676,469	-		GFF4679	0.30	-1.1
4,676,507	-		GFF4679	0.34	+1.2
4,676,514	+		GFF4679	0.35	+0.5
4,676,515	-		GFF4679	0.35	+1.1
4,676,517	-		GFF4679	0.35	-0.1
4,676,521	+		GFF4679	0.36	-0.4
4,676,534	-		GFF4679	0.37	+0.1
4,676,536	+		GFF4679	0.37	-0.5
4,676,536	+		GFF4679	0.37	-1.6
4,676,536	+		GFF4679	0.37	+0.5
4,676,536	+		GFF4679	0.37	-0.7
4,676,536	+		GFF4679	0.37	-0.7
4,676,536	+		GFF4679	0.37	-0.3
4,676,536	+		GFF4679	0.37	+0.4
4,676,544	+		GFF4679	0.38	-0.3
4,676,544	+		GFF4679	0.38	-0.9
4,676,544	-		GFF4679	0.38	-0.5
4,676,544	-		GFF4679	0.38	-0.5
4,676,544	-		GFF4679	0.38	-0.4
4,676,545	-		GFF4679	0.38	+1.1
4,676,574	+		GFF4679	0.41	-1.0
4,676,585	-		GFF4679	0.42	+0.3
4,676,592	+		GFF4679	0.43	+0.3
4,676,607	+		GFF4679	0.44	-0.5
4,676,612	+		GFF4679	0.45	+0.7
4,676,650	+		GFF4679	0.48	-0.8
4,676,657	+		GFF4679	0.49	-0.9
4,676,659	+		GFF4679	0.49	-0.7
4,676,667	-		GFF4679	0.50	+1.1
4,676,667	-		GFF4679	0.50	-1.8
4,676,679	+		GFF4679	0.51	+0.4
4,676,679	+		GFF4679	0.51	-0.6
4,676,694	+		GFF4679	0.53	+0.9
4,676,699	+		GFF4679	0.53	-0.8
4,676,699	+		GFF4679	0.53	+0.1
4,676,702	-		GFF4679	0.53	+0.1
4,676,702	-		GFF4679	0.53	-0.1
4,676,702	-		GFF4679	0.53	+1.5
4,676,704	+		GFF4679	0.54	+0.8
4,676,704	+		GFF4679	0.54	-0.3
4,676,704	+		GFF4679	0.54	-0.5
4,676,704	+		GFF4679	0.54	+0.5
4,676,704	+		GFF4679	0.54	+0.6
4,676,704	+		GFF4679	0.54	+0.8
4,676,707	-		GFF4679	0.54	-0.1
4,676,707	-		GFF4679	0.54	+0.0
4,676,712	-		GFF4679	0.54	+0.4
4,676,712	-		GFF4679	0.54	-0.6
4,676,712	-		GFF4679	0.54	+0.9
4,676,712	-		GFF4679	0.54	+0.3
4,676,743	+		GFF4679	0.57	+1.2
4,676,806	+		GFF4679	0.64	+0.8
4,676,814	+		GFF4679	0.64	+0.3
4,676,831	-		GFF4679	0.66	-1.0
4,676,833	+		GFF4679	0.66	+1.0
4,676,833	+		GFF4679	0.66	+0.2
4,676,833	+		GFF4679	0.66	+0.4
4,676,833	+		GFF4679	0.66	-0.6
4,676,841	-		GFF4679	0.67	+1.1
4,676,841	-		GFF4679	0.67	+0.3
4,676,842	+		GFF4679	0.67	+0.3
4,676,852	+		GFF4679	0.68	-1.2
4,676,852	+		GFF4679	0.68	-1.1
4,676,860	-		GFF4679	0.69	+0.0
4,676,860	-		GFF4679	0.69	-0.3
4,676,860	-		GFF4679	0.69	+1.2
4,676,860	-		GFF4679	0.69	-1.6
4,676,860	-		GFF4679	0.69	-0.2
4,676,860	-		GFF4679	0.69	-0.9
4,676,860	-		GFF4679	0.69	+0.0
4,676,860	-		GFF4679	0.69	+0.9
4,676,860	-		GFF4679	0.69	-1.6
4,676,881	-		GFF4679	0.71	+1.1
4,676,888	+		GFF4679	0.72	+1.3
4,676,888	+		GFF4679	0.72	+1.5
4,676,888	+		GFF4679	0.72	-0.3
4,676,888	+		GFF4679	0.72	-0.8
4,676,888	+		GFF4679	0.72	+0.7
4,676,896	-		GFF4679	0.72	-0.6
4,676,896	-		GFF4679	0.72	+0.8
4,676,896	-		GFF4679	0.72	-0.0
4,676,896	-		GFF4679	0.72	+0.9
4,676,896	-		GFF4679	0.72	+0.6
4,676,896	-		GFF4679	0.72	+0.4
4,676,896	-		GFF4679	0.72	+0.1
4,676,896	-		GFF4679	0.72	+0.9
4,676,896	-		GFF4679	0.72	-1.4
4,676,896	-		GFF4679	0.72	-0.6
4,676,906	-		GFF4679	0.73	+1.4
4,676,906	-		GFF4679	0.73	-0.0
4,676,909	+		GFF4679	0.74	+0.2
4,676,909	+		GFF4679	0.74	+0.9
4,676,909	+		GFF4679	0.74	+1.6
4,676,909	+		GFF4679	0.74	-0.1
4,676,914	+		GFF4679	0.74	-0.5
4,676,914	+		GFF4679	0.74	-0.4
4,676,914	+		GFF4679	0.74	+0.6
4,676,914	+		GFF4679	0.74	-1.7
4,676,914	+		GFF4679	0.74	+0.5
4,676,914	+		GFF4679	0.74	-1.1
4,676,914	+		GFF4679	0.74	+0.3
4,676,914	+		GFF4679	0.74	+0.2
4,676,914	+		GFF4679	0.74	+1.5
4,676,914	+		GFF4679	0.74	+0.5
4,676,917	-		GFF4679	0.75	+0.4
4,676,917	-		GFF4679	0.75	+0.9
4,676,919	+		GFF4679	0.75	-1.3
4,676,922	-		GFF4679	0.75	+0.1
4,676,922	-		GFF4679	0.75	-1.6
4,676,922	-		GFF4679	0.75	+0.6
4,676,922	-		GFF4679	0.75	-0.4
4,676,922	-		GFF4679	0.75	+0.8
4,676,922	-		GFF4679	0.75	+0.4
4,676,922	-		GFF4679	0.75	+0.5
4,677,017	+		GFF4679	0.84	-0.1
4,677,032	+		GFF4679	0.86	-0.0
4,677,056	+		GFF4679	0.88	+0.5
4,677,061	+		GFF4679	0.89	+1.3
4,677,061	+		GFF4679	0.89	+0.1
4,677,061	+		GFF4679	0.89	-0.8
4,677,061	+		GFF4679	0.89	-0.8
4,677,061	+		GFF4679	0.89	+0.1
4,677,061	+		GFF4679	0.89	+0.2
4,677,063	+		GFF4679	0.89	+0.4
4,677,063	+		GFF4679	0.89	+0.5
4,677,069	-		GFF4679	0.89	-0.7
4,677,074	-				+0.3
4,677,117	+				+0.1
4,677,117	+				+0.2
4,677,117	+				-1.7
4,677,122	+				-0.9
4,677,125	-				-2.6
4,677,129	+				+0.3
4,677,129	+				-0.8
4,677,129	+				-0.2
4,677,134	+				-0.1
4,677,142	-				-1.7
4,677,170	+				+0.8
4,677,178	+				-2.4
4,677,178	-				+0.9
4,677,183	-				+0.9
4,677,189	+				-2.2
4,677,189	+				+1.1
4,677,196	+				-0.4
4,677,210	+				+0.2
4,677,210	+				+0.8
4,677,218	-				+0.3
4,677,257	+				-1.0
4,677,262	+				-0.2
4,677,262	+				-0.2
4,677,267	+				-0.7
4,677,267	+				-1.5
4,677,267	+				-1.8
4,677,267	+				+1.0
4,677,267	+				+1.7
4,677,267	+				-1.4
4,677,267	+				-0.0
4,677,270	-				-0.6
4,677,272	+				-0.3
4,677,275	-				+0.7
4,677,275	-				-0.5
4,677,275	-				+0.6
4,677,275	-				+1.9
4,677,275	-				+0.4
4,677,275	-				+0.8
4,677,277	-				-0.2
4,677,304	+		GFF4680	0.12	+0.2
4,677,305	-		GFF4680	0.12	+1.3
4,677,305	-		GFF4680	0.12	-0.2
4,677,305	-		GFF4680	0.12	+0.7
4,677,309	+		GFF4680	0.12	+0.3
4,677,358	-		GFF4680	0.16	-0.6
4,677,403	+		GFF4680	0.20	-0.9
4,677,431	+		GFF4680	0.23	+0.5
4,677,494	+		GFF4680	0.28	+0.3
4,677,502	-		GFF4680	0.29	+0.9
4,677,518	+		GFF4680	0.31	-0.0
4,677,526	-		GFF4680	0.31	+0.0
4,677,526	-		GFF4680	0.31	+0.7
4,677,526	-		GFF4680	0.31	+0.2
4,677,531	-		GFF4680	0.32	+0.2
4,677,531	-		GFF4680	0.32	+1.4
4,677,619	+		GFF4680	0.39	+0.5
4,677,624	+		GFF4680	0.40	-0.2
4,677,632	-		GFF4680	0.41	+0.7
4,677,649	-		GFF4680	0.42	+0.5
4,677,651	+		GFF4680	0.42	-0.2
4,677,651	+		GFF4680	0.42	+0.4
4,677,651	+		GFF4680	0.42	+1.2
4,677,659	-		GFF4680	0.43	+1.2
4,677,659	-		GFF4680	0.43	+1.4
4,677,661	+		GFF4680	0.43	-0.3
4,677,661	+		GFF4680	0.43	+0.7
4,677,701	+		GFF4680	0.47	-0.4
4,677,706	+		GFF4680	0.47	+0.3
4,677,708	-		GFF4680	0.47	+0.6
4,677,714	-		GFF4680	0.48	+0.3
4,677,714	-		GFF4680	0.48	-2.3
4,677,714	-		GFF4680	0.48	-1.9
4,677,761	+		GFF4680	0.52	+0.3
4,677,766	+		GFF4680	0.52	+0.4
4,677,783	+		GFF4680	0.54	-0.6
4,677,784	-		GFF4680	0.54	-1.6
4,677,802	+		GFF4680	0.56	-0.5
4,677,802	+		GFF4680	0.56	+0.9
4,677,809	-		GFF4680	0.56	+0.6
4,677,809	-		GFF4680	0.56	+0.8
4,677,836	-		GFF4680	0.59	+2.0
4,677,841	-		GFF4680	0.59	+0.1
4,677,864	+		GFF4680	0.61	+0.3
4,677,864	-		GFF4680	0.61	-0.7
4,677,872	-		GFF4680	0.62	+1.7
4,677,880	+		GFF4680	0.62	-1.5
4,677,921	+		GFF4680	0.66	+0.7
4,677,924	-		GFF4680	0.66	-0.2
4,677,924	-		GFF4680	0.66	+0.1
4,677,924	-		GFF4680	0.66	+1.1
4,677,924	-		GFF4680	0.66	+1.2
4,677,929	-		GFF4680	0.67	+0.4
4,677,929	-		GFF4680	0.67	-1.8
4,677,929	-		GFF4680	0.67	-0.8
4,677,938	+		GFF4680	0.68	+0.8
4,677,938	+		GFF4680	0.68	-1.4
4,677,938	+		GFF4680	0.68	+0.1
4,677,938	+		GFF4680	0.68	+0.8
4,677,938	+		GFF4680	0.68	+0.1
4,677,938	+		GFF4680	0.68	-1.0
4,677,938	+		GFF4680	0.68	-0.1
4,677,945	+		GFF4680	0.68	-0.0
4,677,946	-		GFF4680	0.68	+1.0
4,677,946	-		GFF4680	0.68	+0.8
4,677,946	-		GFF4680	0.68	-1.0
4,677,946	-		GFF4680	0.68	-0.0
4,677,948	+		GFF4680	0.68	-0.9
4,677,951	+		GFF4680	0.69	-0.9
4,677,951	-		GFF4680	0.69	+0.5
4,677,959	+		GFF4680	0.69	+0.5
4,677,968	-		GFF4680	0.70	-2.0
4,677,968	-		GFF4680	0.70	-1.3
4,677,970	+		GFF4680	0.70	-0.1
4,677,970	+		GFF4680	0.70	-0.0
4,677,970	+		GFF4680	0.70	+0.1
4,677,970	+		GFF4680	0.70	+0.8
4,677,970	+		GFF4680	0.70	-0.5
4,677,970	+		GFF4680	0.70	+0.8
4,677,970	+		GFF4680	0.70	+0.7
4,677,970	+		GFF4680	0.70	+1.0
4,677,973	-		GFF4680	0.71	+1.3
4,677,975	+		GFF4680	0.71	+0.6
4,677,975	+		GFF4680	0.71	-0.5
4,677,978	-		GFF4680	0.71	+1.0
4,677,978	-		GFF4680	0.71	-1.0
4,677,978	-		GFF4680	0.71	-0.5
4,677,978	-		GFF4680	0.71	+0.8
4,677,978	-		GFF4680	0.71	+1.4
4,677,979	+		GFF4680	0.71	+1.2
4,677,980	+		GFF4680	0.71	-0.6
4,678,005	+		GFF4680	0.73	+0.2
4,678,010	-		GFF4680	0.74	+0.4
4,678,019	+		GFF4680	0.75	+0.1
4,678,029	+		GFF4680	0.76	-0.2
4,678,029	+		GFF4680	0.76	+1.3
4,678,029	+		GFF4680	0.76	+0.3
4,678,029	+		GFF4680	0.76	+0.1
4,678,029	+		GFF4680	0.76	+0.6
4,678,029	+		GFF4680	0.76	+0.5
4,678,029	+		GFF4680	0.76	+0.8
4,678,029	+		GFF4680	0.76	-0.1
4,678,029	+		GFF4680	0.76	+0.8
4,678,029	+		GFF4680	0.76	+0.1
4,678,029	-		GFF4680	0.76	-0.6
4,678,037	-		GFF4680	0.76	-0.7
4,678,037	-		GFF4680	0.76	+0.2
4,678,037	-		GFF4680	0.76	+0.5
4,678,037	-		GFF4680	0.76	-1.1
4,678,037	-		GFF4680	0.76	+0.4
4,678,037	-		GFF4680	0.76	+1.2
4,678,037	-		GFF4680	0.76	-0.6
4,678,037	-		GFF4680	0.76	+0.6
4,678,043	+		GFF4680	0.77	-0.4
4,678,075	+		GFF4680	0.80	+0.3
4,678,095	+		GFF4680	0.81	-0.3
4,678,097	+		GFF4680	0.82	+0.7
4,678,097	+		GFF4680	0.82	+0.4
4,678,103	-		GFF4680	0.82	-0.0
4,678,105	-		GFF4680	0.82	-0.2
4,678,105	-		GFF4680	0.82	-0.0
4,678,105	-		GFF4680	0.82	-0.6
4,678,105	-		GFF4680	0.82	+1.8
4,678,105	-		GFF4680	0.82	+1.0
4,678,105	-		GFF4680	0.82	+0.7
4,678,115	+		GFF4680	0.83	+0.3
4,678,115	-		GFF4680	0.83	-0.1
4,678,120	+		GFF4680	0.84	-0.7
4,678,123	-		GFF4680	0.84	+0.1
4,678,129	-		GFF4680	0.84	-0.5
4,678,129	-		GFF4680	0.84	-0.3
4,678,133	-		GFF4680	0.85	-0.5
4,678,153	-		GFF4680	0.87	+0.4
4,678,163	+		GFF4680	0.87	+0.8
4,678,214	+				+0.3
4,678,214	+				+1.2
4,678,258	-				-0.0
4,678,260	-				+0.2
4,678,268	-				+0.3
4,678,270	+				-0.7
4,678,270	+				+0.1
4,678,278	-				+0.6
4,678,278	-				+0.4
4,678,278	-				+1.1
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