Strain Fitness in Sphingobium sp. HT1-2 around GFF4608

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,603,411	-		GFF4607	0.56	+1.1
4,603,414	-		GFF4607	0.56	-0.5
4,603,414	-		GFF4607	0.56	-2.1
4,603,414	-		GFF4607	0.56	+1.0
4,603,414	-		GFF4607	0.56	-0.1
4,603,414	-		GFF4607	0.56	-0.3
4,603,414	-		GFF4607	0.56	-2.2
4,603,414	-		GFF4607	0.56	-1.1
4,603,414	-		GFF4607	0.56	-0.3
4,603,414	-		GFF4607	0.56	-0.2
4,603,414	-		GFF4607	0.56	-0.6
4,603,414	-		GFF4607	0.56	+0.1
4,603,414	-		GFF4607	0.56	-0.8
4,603,414	-		GFF4607	0.56	+0.1
4,603,414	-		GFF4607	0.56	-2.6
4,603,414	-		GFF4607	0.56	-0.0
4,603,414	-		GFF4607	0.56	+0.4
4,603,414	-		GFF4607	0.56	-0.9
4,603,414	-		GFF4607	0.56	-0.2
4,603,414	-		GFF4607	0.56	-0.7
4,603,414	-		GFF4607	0.56	-1.1
4,603,416	+		GFF4607	0.56	-2.3
4,603,416	+		GFF4607	0.56	-1.5
4,603,424	-		GFF4607	0.56	-2.1
4,603,424	-		GFF4607	0.56	-1.7
4,603,433	+		GFF4607	0.57	-0.4
4,603,433	+		GFF4607	0.57	-1.5
4,603,441	-		GFF4607	0.57	-1.6
4,603,445	+		GFF4607	0.57	-1.2
4,603,474	-		GFF4607	0.59	+0.7
4,603,474	-		GFF4607	0.59	-0.2
4,603,497	+		GFF4607	0.60	-0.3
4,603,529	+		GFF4607	0.62	-0.1
4,603,537	-		GFF4607	0.62	-1.9
4,603,537	-		GFF4607	0.62	+0.0
4,603,545	-		GFF4607	0.63	-1.1
4,603,556	+		GFF4607	0.63	+0.3
4,603,558	+		GFF4607	0.64	-0.7
4,603,564	-		GFF4607	0.64	+0.3
4,603,564	-		GFF4607	0.64	+0.1
4,603,564	-		GFF4607	0.64	-0.5
4,603,565	+		GFF4607	0.64	-0.2
4,603,572	+		GFF4607	0.64	-1.3
4,603,580	+		GFF4607	0.65	-0.2
4,603,605	+		GFF4607	0.66	+0.5
4,603,613	-		GFF4607	0.67	-2.4
4,603,613	-		GFF4607	0.67	-1.7
4,603,615	+		GFF4607	0.67	+0.8
4,603,623	-		GFF4607	0.67	-0.1
4,603,623	-		GFF4607	0.67	-1.7
4,603,625	+		GFF4607	0.67	-0.3
4,603,630	+		GFF4607	0.68	-0.8
4,603,638	-		GFF4607	0.68	-0.7
4,603,638	-		GFF4607	0.68	-0.5
4,603,638	-		GFF4607	0.68	+0.3
4,603,638	-		GFF4607	0.68	-1.8
4,603,638	-		GFF4607	0.68	-2.5
4,603,643	+		GFF4607	0.68	+1.4
4,603,648	+		GFF4607	0.69	-1.6
4,603,648	+		GFF4607	0.69	-1.0
4,603,648	+		GFF4607	0.69	-0.1
4,603,648	+		GFF4607	0.69	+0.4
4,603,656	-		GFF4607	0.69	+0.0
4,603,656	-		GFF4607	0.69	+0.2
4,603,673	+		GFF4607	0.70	+0.6
4,603,676	-		GFF4607	0.70	+0.1
4,603,676	-		GFF4607	0.70	-1.5
4,603,676	-		GFF4607	0.70	+0.5
4,603,680	-		GFF4607	0.70	+0.8
4,603,717	+		GFF4607	0.72	-1.5
4,603,719	+		GFF4607	0.72	-1.4
4,603,725	-		GFF4607	0.73	-0.2
4,603,725	-		GFF4607	0.73	-0.5
4,603,727	+		GFF4607	0.73	-1.2
4,603,727	+		GFF4607	0.73	-1.4
4,603,727	+		GFF4607	0.73	-1.0
4,603,727	+		GFF4607	0.73	-0.1
4,603,732	+		GFF4607	0.73	-0.8
4,603,735	-		GFF4607	0.73	-0.8
4,603,735	-		GFF4607	0.73	-2.2
4,603,735	-		GFF4607	0.73	-0.6
4,603,735	-		GFF4607	0.73	+0.5
4,603,735	-		GFF4607	0.73	+0.6
4,603,735	-		GFF4607	0.73	+0.8
4,603,735	-		GFF4607	0.73	-1.5
4,603,740	-		GFF4607	0.74	+0.5
4,603,752	+		GFF4607	0.74	+0.4
4,603,754	+		GFF4607	0.74	-1.9
4,603,783	+		GFF4607	0.76	-0.0
4,603,792	-		GFF4607	0.76	-1.3
4,603,792	-		GFF4607	0.76	+0.2
4,603,792	-		GFF4607	0.76	-0.8
4,603,792	-		GFF4607	0.76	+0.5
4,603,792	-		GFF4607	0.76	-0.4
4,603,792	-		GFF4607	0.76	-0.3
4,603,855	+		GFF4607	0.80	-0.3
4,603,870	-		GFF4607	0.81	-1.6
4,603,900	+		GFF4607	0.82	-0.4
4,603,908	-		GFF4607	0.83	-0.1
4,603,908	-		GFF4607	0.83	-0.6
4,603,920	-		GFF4607	0.83	+0.8
4,603,929	+		GFF4607	0.84	+0.1
4,603,967	-		GFF4607	0.86	-0.5
4,603,968	+		GFF4607	0.86	+0.9
4,603,968	+		GFF4607	0.86	-0.3
4,603,968	+		GFF4607	0.86	+0.5
4,603,976	-		GFF4607	0.86	-0.5
4,603,986	+		GFF4607	0.87	-0.6
4,603,998	-		GFF4607	0.88	+1.2
4,604,005	+		GFF4607	0.88	+0.2
4,604,007	+		GFF4607	0.88	+0.6
4,604,041	+				-1.5
4,604,070	+				+0.5
4,604,070	+				+1.1
4,604,070	+				+0.8
4,604,077	+				-0.6
4,604,077	+				+0.1
4,604,077	+				+0.1
4,604,078	-				+0.9
4,604,078	-				+0.9
4,604,080	-				+0.0
4,604,085	-				-0.6
4,604,085	-				-1.9
4,604,107	+				+0.2
4,604,115	-				+1.0
4,604,115	-				-1.2
4,604,115	-				-0.2
4,604,169	+				-1.2
4,604,177	-				-0.5
4,604,177	-				-1.5
4,604,177	-				-0.9
4,604,177	-				-1.7
4,604,177	-				-0.6
4,604,177	-				-0.8
4,604,218	+				-1.1
4,604,218	+				-0.3
4,604,218	+				-2.3
4,604,218	+				-0.6
4,604,218	-				-2.5
4,604,219	+				+0.1
4,604,219	+				-0.3
4,604,219	-				-1.4
4,604,226	-				+0.1
4,604,226	-				-0.6
4,604,226	-				-1.8
4,604,227	-				-1.6
4,604,227	-				+1.2
4,604,227	-				-0.2
4,604,227	-				-1.2
4,604,229	+				-2.8
4,604,229	+				+1.3
4,604,229	+				-0.1
4,604,229	+				+1.7
4,604,229	+				+1.5
4,604,229	+				-1.1
4,604,237	-				+0.5
4,604,237	-				-0.1
4,604,237	-				-0.6
4,604,237	-				+0.8
4,604,237	-				-1.0
4,604,237	-				-0.2
4,604,278	-				-2.6
4,604,334	-				+0.8
4,604,337	+				-2.2
4,604,378	-				-0.5
4,604,390	+				+0.3
4,604,390	+				+0.5
4,604,390	+				-0.3
4,604,390	+				-0.9
4,604,390	-				+0.9
4,604,398	-				-1.5
4,604,398	-				-0.8
4,604,398	-				-0.7
4,604,398	-				-0.9
4,604,425	-				+0.7
4,604,436	-		GFF4608	0.17	+1.3
4,604,452	+		GFF4608	0.27	+0.9
4,604,460	-		GFF4608	0.32	+0.4
4,604,472	-		GFF4608	0.40	-2.1
4,604,491	-		GFF4608	0.52	-1.2
4,604,496	-		GFF4608	0.55	+0.5
4,604,501	+		GFF4608	0.58	-1.9
4,604,501	+		GFF4608	0.58	-0.9
4,604,501	+		GFF4608	0.58	-0.8
4,604,509	-		GFF4608	0.63	-1.2
4,604,509	-		GFF4608	0.63	+0.6
4,604,537	+		GFF4608	0.81	-0.2
4,604,537	+		GFF4608	0.81	-1.0
4,604,543	-		GFF4608	0.85	-0.6
4,604,546	+		GFF4608	0.87	-1.6
4,604,546	+		GFF4608	0.87	-1.3
4,604,568	+				+0.3
4,604,571	-				+0.5
4,604,600	+				-0.5
4,604,611	+				-0.3
4,604,611	+				-0.5
4,604,615	+				+0.6
4,604,619	-				-0.9
4,604,657	-				-2.0
4,604,682	+				-0.2
4,604,696	+				+0.4
4,604,749	+				-0.3
4,604,751	+				+0.4
4,604,754	+				-1.5
4,604,777	+				+1.5
4,604,778	-				+0.8
4,604,784	+				-2.2
4,604,785	-				-0.4
4,604,796	+		GFF4609	0.12	+0.0
4,604,812	-		GFF4609	0.14	+1.0
4,604,872	+		GFF4609	0.23	-0.4
4,604,872	+		GFF4609	0.23	+1.0
4,604,872	+		GFF4609	0.23	-0.6
4,604,877	+		GFF4609	0.24	-0.0
4,604,877	+		GFF4609	0.24	-0.4
4,604,877	+		GFF4609	0.24	-0.7
4,604,880	-		GFF4609	0.24	+1.0
4,604,882	+		GFF4609	0.24	+1.2
4,604,885	-		GFF4609	0.25	+0.1
4,604,902	+		GFF4609	0.27	-0.9
4,604,909	+		GFF4609	0.28	+0.5
4,604,910	+		GFF4609	0.28	+1.1
4,604,910	+		GFF4609	0.28	-0.9
4,604,916	-		GFF4609	0.29	+0.0
4,604,918	-		GFF4609	0.30	-0.1
4,604,934	+		GFF4609	0.32	+1.1
4,604,934	+		GFF4609	0.32	+0.4
4,604,942	-		GFF4609	0.33	+1.0
4,604,955	-		GFF4609	0.35	-1.6
4,604,989	+		GFF4609	0.40	+0.3
4,604,997	-		GFF4609	0.41	+1.7
4,605,013	+		GFF4609	0.44	-1.6
4,605,079	+		GFF4609	0.53	-2.4
4,605,082	-		GFF4609	0.54	-1.1
4,605,086	+		GFF4609	0.55	-0.8
4,605,087	-		GFF4609	0.55	-0.1
4,605,111	+		GFF4609	0.58	-0.5
4,605,111	+		GFF4609	0.58	-0.6
4,605,126	+		GFF4609	0.60	-1.9
4,605,136	-		GFF4609	0.62	-0.6
4,605,160	+		GFF4609	0.65	+0.2
4,605,160	+		GFF4609	0.65	-0.3
4,605,163	-		GFF4609	0.66	-0.4
4,605,169	+		GFF4609	0.67	-2.5
4,605,173	+		GFF4609	0.67	-0.4
4,605,178	+		GFF4609	0.68	+1.2
4,605,183	+		GFF4609	0.69	-1.0
4,605,186	-		GFF4609	0.69	-0.3
4,605,188	+		GFF4609	0.70	-0.9
4,605,191	-		GFF4609	0.70	-0.8
4,605,191	-		GFF4609	0.70	-0.4
4,605,196	-		GFF4609	0.71	+0.2
4,605,196	-		GFF4609	0.71	-0.6
4,605,239	+		GFF4609	0.77	+0.4
4,605,239	+		GFF4609	0.77	-0.5
4,605,239	+		GFF4609	0.77	-0.6
4,605,239	+		GFF4609	0.77	-1.1
4,605,239	+		GFF4609	0.77	+0.6
4,605,239	+		GFF4609	0.77	+1.1
4,605,239	+		GFF4609	0.77	-0.3
4,605,239	+		GFF4609	0.77	+0.1
4,605,239	+		GFF4609	0.77	-2.4
4,605,239	+		GFF4609	0.77	+0.4
4,605,239	+		GFF4609	0.77	-1.2
4,605,239	+		GFF4609	0.77	+0.4
4,605,239	+		GFF4609	0.77	-0.3
4,605,244	+		GFF4609	0.78	-0.6
4,605,247	-		GFF4609	0.78	+0.0
4,605,247	-		GFF4609	0.78	+1.3
4,605,247	-		GFF4609	0.78	-1.5
4,605,247	-		GFF4609	0.78	-2.1
4,605,247	-		GFF4609	0.78	+0.4
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	+0.4
4,605,247	-		GFF4609	0.78	+0.6
4,605,247	-		GFF4609	0.78	-2.6
4,605,247	-		GFF4609	0.78	+0.5
4,605,247	-		GFF4609	0.78	-0.1
4,605,247	-		GFF4609	0.78	-0.1
4,605,247	-		GFF4609	0.78	-1.0
4,605,247	-		GFF4609	0.78	-1.6
4,605,247	-		GFF4609	0.78	+1.5
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	-0.9
4,605,247	-		GFF4609	0.78	-1.9
4,605,247	-		GFF4609	0.78	+0.8
4,605,254	+		GFF4609	0.79	+0.7
4,605,254	+		GFF4609	0.79	-0.9
4,605,273	+		GFF4609	0.82	-1.8
4,605,280	+		GFF4609	0.83	-0.7
4,605,305	+		GFF4609	0.87	-0.6
4,605,321	+		GFF4609	0.89	-1.0
4,605,322	+		GFF4609	0.89	+0.7
4,605,327	+				-0.2
4,605,338	-				+0.5
4,605,340	+				-1.9
4,605,348	-				+0.2
4,605,348	-				-0.5
4,605,348	-				+0.1
4,605,353	-				-0.3
4,605,353	-				+0.1
4,605,353	-				-0.1
4,605,361	+				-2.1
4,605,380	-				-0.6
4,605,390	+				-0.3
4,605,398	+				-2.3
4,605,406	-				+0.2
4,605,416	-				-1.7
4,605,430	+				-0.6
4,605,435	-				-2.2
4,605,449	+				-0.2
4,605,457	+				+1.5
4,605,462	-				-1.2
4,605,469	+				+0.3
4,605,469	+				-0.8
4,605,477	-				-0.6
4,605,477	-				-0.6
4,605,477	-				-0.3
4,605,477	-				-1.2
4,605,477	-				+0.2
4,605,482	-				+0.7
4,605,492	-				-2.0
4,605,496	-				-0.3
4,605,498	+				-1.2
4,605,498	-				+0.4
4,605,506	+				-0.2
4,605,516	+				-0.8
4,605,516	+				-0.2
4,605,527	+				-1.0
4,605,531	+				-0.3
4,605,535	-				-0.5
4,605,535	-				+0.8
4,605,545	-				+0.1
4,605,557	+				+0.7