Strain Fitness in Sphingobium sp. HT1-2 around GFF4553

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,542,880	-		GFF4552	0.23	+0.9
4,542,889	-		GFF4552	0.23	-0.6
4,542,891	-		GFF4552	0.23	-0.5
4,542,899	-		GFF4552	0.24	-1.3
4,542,908	-		GFF4552	0.25	-1.4
4,542,913	-		GFF4552	0.25	+0.7
4,542,926	+		GFF4552	0.26	-0.5
4,542,940	+		GFF4552	0.27	-1.4
4,542,948	-		GFF4552	0.28	-0.4
4,542,948	-		GFF4552	0.28	-1.3
4,542,990	-		GFF4552	0.32	-0.8
4,542,990	-		GFF4552	0.32	+1.3
4,543,016	+		GFF4552	0.34	+0.2
4,543,026	+		GFF4552	0.34	-0.3
4,543,026	+		GFF4552	0.34	-0.6
4,543,026	+		GFF4552	0.34	-0.4
4,543,026	+		GFF4552	0.34	+0.7
4,543,026	+		GFF4552	0.34	+0.7
4,543,034	-		GFF4552	0.35	-1.6
4,543,034	-		GFF4552	0.35	-0.1
4,543,034	-		GFF4552	0.35	+0.4
4,543,034	-		GFF4552	0.35	-1.2
4,543,034	-		GFF4552	0.35	-0.5
4,543,034	-		GFF4552	0.35	+0.1
4,543,034	-		GFF4552	0.35	+0.8
4,543,034	-		GFF4552	0.35	-0.9
4,543,034	-		GFF4552	0.35	-0.3
4,543,034	-		GFF4552	0.35	-1.7
4,543,047	+		GFF4552	0.36	-0.6
4,543,108	-		GFF4552	0.41	-0.3
4,543,156	-		GFF4552	0.45	-0.7
4,543,156	-		GFF4552	0.45	-0.7
4,543,156	-		GFF4552	0.45	-1.5
4,543,167	+		GFF4552	0.46	-1.4
4,543,176	-		GFF4552	0.47	+1.2
4,543,216	+		GFF4552	0.50	+0.5
4,543,224	+		GFF4552	0.51	-0.7
4,543,224	+		GFF4552	0.51	+1.4
4,543,224	-		GFF4552	0.51	-2.1
4,543,227	-		GFF4552	0.51	-0.7
4,543,232	-		GFF4552	0.51	-1.2
4,543,232	-		GFF4552	0.51	-2.5
4,543,232	-		GFF4552	0.51	+0.9
4,543,232	-		GFF4552	0.51	-1.0
4,543,233	+		GFF4552	0.51	+0.1
4,543,245	+		GFF4552	0.52	-0.5
4,543,257	+		GFF4552	0.53	-1.6
4,543,257	+		GFF4552	0.53	+0.0
4,543,267	+		GFF4552	0.54	-0.2
4,543,275	-		GFF4552	0.55	-2.0
4,543,304	+		GFF4552	0.57	-2.6
4,543,304	+		GFF4552	0.57	+2.2
4,543,325	+		GFF4552	0.59	-1.0
4,543,325	+		GFF4552	0.59	+0.3
4,543,325	+		GFF4552	0.59	+0.5
4,543,327	-		GFF4552	0.59	-0.5
4,543,332	-		GFF4552	0.59	+0.3
4,543,332	-		GFF4552	0.59	-0.4
4,543,332	-		GFF4552	0.59	+0.3
4,543,332	-		GFF4552	0.59	+0.1
4,543,333	-		GFF4552	0.60	-1.1
4,543,362	+		GFF4552	0.62	-0.9
4,543,373	+		GFF4552	0.63	+0.5
4,543,373	+		GFF4552	0.63	+1.3
4,543,381	-		GFF4552	0.63	+0.6
4,543,381	-		GFF4552	0.63	-2.3
4,543,387	+		GFF4552	0.64	+0.7
4,543,395	-		GFF4552	0.65	-0.3
4,543,400	-		GFF4552	0.65	-0.6
4,543,400	-		GFF4552	0.65	+0.2
4,543,404	-		GFF4552	0.65	-0.7
4,543,407	+		GFF4552	0.66	+0.8
4,543,412	+		GFF4552	0.66	+1.3
4,543,412	+		GFF4552	0.66	-0.4
4,543,412	+		GFF4552	0.66	-1.3
4,543,412	+		GFF4552	0.66	+0.6
4,543,412	+		GFF4552	0.66	-1.5
4,543,412	+		GFF4552	0.66	+0.3
4,543,412	+		GFF4552	0.66	+1.1
4,543,412	+		GFF4552	0.66	+0.0
4,543,412	+		GFF4552	0.66	+0.0
4,543,412	+		GFF4552	0.66	-0.7
4,543,420	-		GFF4552	0.67	+0.3
4,543,420	-		GFF4552	0.67	+0.1
4,543,420	-		GFF4552	0.67	-0.4
4,543,420	-		GFF4552	0.67	-0.7
4,543,420	-		GFF4552	0.67	+0.2
4,543,420	-		GFF4552	0.67	+0.9
4,543,420	-		GFF4552	0.67	-1.4
4,543,422	+		GFF4552	0.67	-0.6
4,543,432	-		GFF4552	0.68	+0.6
4,543,437	-		GFF4552	0.68	-0.4
4,543,437	-		GFF4552	0.68	+1.0
4,543,437	-		GFF4552	0.68	-0.4
4,543,437	-		GFF4552	0.68	-0.4
4,543,437	-		GFF4552	0.68	-0.8
4,543,437	-		GFF4552	0.68	-0.9
4,543,452	+		GFF4552	0.69	-0.7
4,543,452	+		GFF4552	0.69	-1.6
4,543,457	+		GFF4552	0.70	+0.4
4,543,457	+		GFF4552	0.70	-1.2
4,543,460	-		GFF4552	0.70	-0.7
4,543,465	-		GFF4552	0.70	-0.1
4,543,465	-		GFF4552	0.70	-1.3
4,543,465	-		GFF4552	0.70	+0.1
4,543,481	+		GFF4552	0.72	-0.7
4,543,516	+		GFF4552	0.75	+0.2
4,543,519	-		GFF4552	0.75	+0.2
4,543,524	-		GFF4552	0.75	+0.7
4,543,524	-		GFF4552	0.75	-0.6
4,543,524	-		GFF4552	0.75	-0.3
4,543,529	-		GFF4552	0.76	-1.0
4,543,574	+		GFF4552	0.79	-0.6
4,543,602	-		GFF4552	0.82	-2.8
4,543,635	+		GFF4552	0.84	-2.1
4,543,635	+		GFF4552	0.84	-0.4
4,543,635	+		GFF4552	0.84	-0.9
4,543,635	+		GFF4552	0.84	-2.2
4,543,640	+		GFF4552	0.85	+1.0
4,543,643	-		GFF4552	0.85	-1.0
4,543,643	-		GFF4552	0.85	-2.4
4,543,643	-		GFF4552	0.85	+1.1
4,543,648	-		GFF4552	0.85	-1.9
4,543,657	-		GFF4552	0.86	-0.5
4,543,673	-		GFF4552	0.87	-0.7
4,543,675	+		GFF4552	0.88	-0.6
4,543,678	-		GFF4552	0.88	-1.5
4,543,687	+		GFF4552	0.88	-1.0
4,543,695	-		GFF4552	0.89	-1.0
4,543,695	-		GFF4552	0.89	-1.1
4,543,699	-		GFF4552	0.89	+0.8
4,543,726	-				+1.3
4,543,751	-				-0.2
4,543,783	+				-1.5
4,543,785	+				-0.6
4,543,789	-				-0.6
4,543,793	-				+0.2
4,543,810	-				-1.1
4,543,823	+				-0.3
4,543,829	-				+0.4
4,543,831	-				+0.0
4,543,831	-				+0.2
4,543,831	-				+0.2
4,543,897	+				-0.6
4,543,897	+				-0.7
4,543,897	+				-0.9
4,543,897	+				-1.1
4,543,897	+				+0.6
4,543,897	+				-0.0
4,543,897	+				-0.7
4,543,897	+				-1.5
4,543,897	+				+0.8
4,543,900	-				-0.4
4,543,905	-				-0.6
4,543,905	-				-2.8
4,543,905	-				+0.1
4,543,905	-				-1.0
4,543,905	-				+0.2
4,543,908	+				-0.5
4,543,921	-				-0.3
4,543,946	-				-0.6
4,543,999	+		GFF4553	0.17	+0.6
4,544,005	+		GFF4553	0.18	-0.5
4,544,016	+		GFF4553	0.20	-0.5
4,544,041	+		GFF4553	0.23	-1.4
4,544,043	+		GFF4553	0.23	-1.7
4,544,043	+		GFF4553	0.23	+0.6
4,544,048	+		GFF4553	0.24	-1.0
4,544,048	+		GFF4553	0.24	-0.9
4,544,048	+		GFF4553	0.24	+0.4
4,544,048	+		GFF4553	0.24	-2.4
4,544,048	+		GFF4553	0.24	-0.4
4,544,048	+		GFF4553	0.24	+0.7
4,544,048	+		GFF4553	0.24	-1.2
4,544,048	+		GFF4553	0.24	-0.9
4,544,050	-		GFF4553	0.24	-0.6
4,544,056	-		GFF4553	0.25	-1.4
4,544,056	-		GFF4553	0.25	+0.7
4,544,056	-		GFF4553	0.25	+0.4
4,544,056	-		GFF4553	0.25	+0.3
4,544,056	-		GFF4553	0.25	-1.1
4,544,056	-		GFF4553	0.25	-1.4
4,544,056	-		GFF4553	0.25	-0.0
4,544,056	-		GFF4553	0.25	+0.2
4,544,056	-		GFF4553	0.25	-0.2
4,544,069	+		GFF4553	0.27	-0.6
4,544,084	-		GFF4553	0.29	-1.9
4,544,092	-		GFF4553	0.30	-0.5
4,544,097	-		GFF4553	0.31	-0.3
4,544,099	+		GFF4553	0.31	-0.3
4,544,104	+		GFF4553	0.32	+0.2
4,544,107	-		GFF4553	0.32	-0.1
4,544,107	-		GFF4553	0.32	+0.5
4,544,112	+		GFF4553	0.33	+1.7
4,544,120	-		GFF4553	0.34	+0.7
4,544,139	-		GFF4553	0.37	-0.5
4,544,145	-		GFF4553	0.37	-0.3
4,544,154	-		GFF4553	0.39	-0.9
4,544,156	+		GFF4553	0.39	+0.1
4,544,156	+		GFF4553	0.39	-0.6
4,544,164	-		GFF4553	0.40	+0.4
4,544,164	-		GFF4553	0.40	-0.0
4,544,164	-		GFF4553	0.40	-1.0
4,544,164	-		GFF4553	0.40	-0.7
4,544,164	-		GFF4553	0.40	-1.1
4,544,164	-		GFF4553	0.40	-0.3
4,544,191	+		GFF4553	0.44	-0.6
4,544,199	-		GFF4553	0.45	+0.7
4,544,199	-		GFF4553	0.45	-2.2
4,544,248	+		GFF4553	0.52	-0.6
4,544,272	-		GFF4553	0.55	-1.4
4,544,296	-		GFF4553	0.58	+1.0
4,544,369	+		GFF4553	0.68	+0.4
4,544,400	+		GFF4553	0.72	+0.3
4,544,434	+		GFF4553	0.77	-0.6
4,544,436	+		GFF4553	0.77	-1.0
4,544,436	+		GFF4553	0.77	+0.3
4,544,436	+		GFF4553	0.77	+0.6
4,544,441	+		GFF4553	0.78	-0.5
4,544,443	+		GFF4553	0.78	+1.6
4,544,443	-		GFF4553	0.78	-0.3
4,544,444	-		GFF4553	0.79	+0.5
4,544,444	-		GFF4553	0.79	-0.9
4,544,444	-		GFF4553	0.79	+0.5
4,544,444	-		GFF4553	0.79	+0.4
4,544,444	-		GFF4553	0.79	-1.4
4,544,444	-		GFF4553	0.79	-0.6
4,544,444	-		GFF4553	0.79	-1.3
4,544,444	-		GFF4553	0.79	-0.4
4,544,446	+		GFF4553	0.79	+0.4
4,544,458	+		GFF4553	0.80	+0.1
4,544,506	+		GFF4553	0.87	-0.0
4,544,506	+		GFF4553	0.87	-0.9
4,544,506	+		GFF4553	0.87	+0.7
4,544,506	+		GFF4553	0.87	-1.6
4,544,514	-		GFF4553	0.88	-0.7
4,544,514	-		GFF4553	0.88	+0.6
4,544,514	-		GFF4553	0.88	+0.4
4,544,519	-		GFF4553	0.89	+1.1
4,544,538	-				+0.2
4,544,548	-				+0.0
4,544,553	-				-0.0
4,544,585	+				+0.1
4,544,585	+				-0.4
4,544,662	+				-0.4
4,544,662	+				+0.6
4,544,662	+				-0.4
4,544,662	+				-0.9
4,544,662	+				-0.6
4,544,662	+				-1.1
4,544,662	+				-0.6
4,544,662	+				-0.7
4,544,670	-				+0.8
4,544,670	-				-0.6
4,544,670	-				+1.0
4,544,670	-				+0.5
4,544,672	-				+0.2
4,544,692	+				+0.5
4,544,695	+				-0.4
4,544,696	-				-0.7
4,544,700	+				+0.3
4,544,700	+				-0.2
4,544,700	+				-0.5
4,544,708	-				-0.2
4,544,713	-				-0.5
4,544,713	-				+0.8
4,544,723	-				-0.5
4,544,726	-				+0.8
4,544,735	+				-0.6
4,544,737	+				-2.0
4,544,737	+				-1.9
4,544,737	+				-1.0
4,544,743	-				-0.9
4,544,745	+				-1.5
4,544,753	-				+0.6
4,544,784	+				-0.6
4,544,809	+				-2.1
4,544,809	+				-1.2
4,544,819	+				+0.7
4,544,819	+				+0.4
4,544,819	+				-0.6
4,544,819	+				-0.6
4,544,819	+				+0.7
4,544,827	-				+0.1
4,544,827	-				-1.0
4,544,827	-				+1.0
4,544,827	-				-0.3
4,544,888	-		GFF4554	0.14	-1.3
4,544,899	+		GFF4554	0.14	-1.4
4,544,899	+		GFF4554	0.14	+0.5
4,544,899	+		GFF4554	0.14	+0.4
4,544,907	-		GFF4554	0.15	+0.5
4,544,907	-		GFF4554	0.15	+0.4
4,544,907	-		GFF4554	0.15	+0.3
4,544,918	+		GFF4554	0.16	-1.8
4,544,939	+		GFF4554	0.17	+0.5
4,544,947	-		GFF4554	0.17	-0.2
4,544,947	-		GFF4554	0.17	-2.5
4,544,970	-		GFF4554	0.19	-0.1
4,545,000	+		GFF4554	0.21	+0.4
4,545,000	+		GFF4554	0.21	+0.9
4,545,000	+		GFF4554	0.21	-0.6
4,545,000	+		GFF4554	0.21	-1.1
4,545,008	-		GFF4554	0.21	+0.6
4,545,008	-		GFF4554	0.21	-0.9
4,545,008	-		GFF4554	0.21	+0.5
4,545,008	-		GFF4554	0.21	-0.5
4,545,008	-		GFF4554	0.21	+0.8
4,545,017	+		GFF4554	0.22	-1.6
4,545,022	+		GFF4554	0.22	+0.7
4,545,025	-		GFF4554	0.23	-1.9
4,545,027	+		GFF4554	0.23	+1.5
4,545,027	+		GFF4554	0.23	+0.9
4,545,027	-		GFF4554	0.23	-0.4
4,545,030	-		GFF4554	0.23	-2.2
4,545,032	+		GFF4554	0.23	-1.6
4,545,039	-		GFF4554	0.23	+0.4
4,545,043	+		GFF4554	0.24	+1.2
4,545,077	+		GFF4554	0.26	+0.1
4,545,077	+		GFF4554	0.26	-0.4
4,545,077	+		GFF4554	0.26	+0.1
4,545,077	+		GFF4554	0.26	-1.5
4,545,085	-		GFF4554	0.26	+0.2
4,545,085	-		GFF4554	0.26	-0.4
4,545,085	-		GFF4554	0.26	-0.2
4,545,110	+		GFF4554	0.28	+0.0
4,545,110	+		GFF4554	0.28	-2.1
4,545,135	-		GFF4554	0.30	-0.1
4,545,135	-		GFF4554	0.30	-0.4
4,545,135	-		GFF4554	0.30	-0.9
4,545,137	-		GFF4554	0.30	-0.9
4,545,151	+		GFF4554	0.31	-1.9
4,545,178	-		GFF4554	0.33	-1.8
4,545,179	+		GFF4554	0.33	-1.6
4,545,187	-		GFF4554	0.33	+1.4
4,545,194	+		GFF4554	0.34	-2.6
4,545,234	+		GFF4554	0.36	-2.0
4,545,236	+		GFF4554	0.36	-0.2
4,545,255	+		GFF4554	0.38	-1.6
4,545,269	+		GFF4554	0.38	-0.3
4,545,277	-		GFF4554	0.39	-3.3
4,545,291	-		GFF4554	0.40	+0.2
4,545,291	-		GFF4554	0.40	+1.0
4,545,295	+		GFF4554	0.40	-2.6
4,545,295	+		GFF4554	0.40	-1.8
4,545,303	-		GFF4554	0.41	+0.2
4,545,303	-		GFF4554	0.41	+1.1
4,545,303	-		GFF4554	0.41	-1.6
4,545,313	-		GFF4554	0.41	-0.7
4,545,318	-		GFF4554	0.42	-2.5
4,545,320	+		GFF4554	0.42	-1.1
4,545,320	+		GFF4554	0.42	+0.6
4,545,328	-		GFF4554	0.42	-0.9
4,545,328	-		GFF4554	0.42	-1.6
4,545,328	-		GFF4554	0.42	+0.8
4,545,328	-		GFF4554	0.42	-0.5
4,545,328	-		GFF4554	0.42	-0.4
4,545,328	-		GFF4554	0.42	+0.9
4,545,353	-		GFF4554	0.44	+1.1
4,545,386	-		GFF4554	0.46	-0.2
4,545,387	+		GFF4554	0.46	-0.8
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4,545,565	+		GFF4554	0.58	-2.1
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