Strain Fitness in Sphingobium sp. HT1-2 around GFF4546

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,537,631	+		GFF4544	0.81	+0.1
4,537,650	+				-1.2
4,537,650	-				-1.8
4,537,650	-				-0.9
4,537,658	-				-1.0
4,537,663	-				-0.7
4,537,665	-				+1.1
4,537,675	-				+0.2
4,537,745	-				+1.1
4,537,771	-				-0.3
4,537,771	-				-1.3
4,537,771	-				-0.3
4,537,771	-				-2.0
4,537,773	+				+0.8
4,537,781	-				-0.5
4,537,784	+				+0.5
4,537,792	-				-0.2
4,537,792	-				-0.1
4,537,792	-				+0.7
4,537,792	-				-0.8
4,537,792	-				-0.2
4,537,802	-				-0.8
4,537,848	-		GFF4545	0.11	+0.5
4,537,853	+		GFF4545	0.11	-1.5
4,537,853	+		GFF4545	0.11	-0.8
4,537,858	+		GFF4545	0.12	-0.7
4,537,861	-		GFF4545	0.13	+0.5
4,537,861	-		GFF4545	0.13	-1.2
4,537,864	+		GFF4545	0.13	-0.9
4,537,869	+		GFF4545	0.14	+0.2
4,537,902	+		GFF4545	0.19	-0.7
4,537,910	-		GFF4545	0.20	+1.0
4,537,976	+		GFF4545	0.30	-0.0
4,537,976	+		GFF4545	0.30	-0.3
4,537,984	-		GFF4545	0.31	-1.5
4,537,996	+		GFF4545	0.33	+1.1
4,538,002	-		GFF4545	0.34	-2.6
4,538,002	-		GFF4545	0.34	-1.7
4,538,015	+		GFF4545	0.36	-0.3
4,538,023	-		GFF4545	0.37	-0.5
4,538,023	-		GFF4545	0.37	-0.0
4,538,052	-		GFF4545	0.41	+0.8
4,538,056	+		GFF4545	0.42	-0.1
4,538,056	+		GFF4545	0.42	-0.4
4,538,058	+		GFF4545	0.42	-0.4
4,538,064	-		GFF4545	0.43	+0.5
4,538,064	-		GFF4545	0.43	-0.7
4,538,064	-		GFF4545	0.43	-0.3
4,538,073	+		GFF4545	0.44	-1.6
4,538,073	+		GFF4545	0.44	-0.2
4,538,073	+		GFF4545	0.44	+1.0
4,538,073	+		GFF4545	0.44	-0.7
4,538,073	+		GFF4545	0.44	-1.2
4,538,073	+		GFF4545	0.44	-0.5
4,538,073	+		GFF4545	0.44	+0.4
4,538,073	+		GFF4545	0.44	+0.6
4,538,076	-		GFF4545	0.45	+0.3
4,538,081	-		GFF4545	0.45	-1.3
4,538,081	-		GFF4545	0.45	+0.6
4,538,081	-		GFF4545	0.45	-0.4
4,538,081	-		GFF4545	0.45	+1.2
4,538,088	-		GFF4545	0.46	-1.8
4,538,105	-		GFF4545	0.49	-0.2
4,538,106	+		GFF4545	0.49	+0.1
4,538,120	+		GFF4545	0.51	-2.6
4,538,129	+		GFF4545	0.53	-0.8
4,538,132	+		GFF4545	0.53	-2.1
4,538,161	+		GFF4545	0.57	+1.1
4,538,161	+		GFF4545	0.57	+0.5
4,538,161	+		GFF4545	0.57	-0.2
4,538,161	+		GFF4545	0.57	-1.3
4,538,162	-		GFF4545	0.58	-0.1
4,538,169	-		GFF4545	0.59	-0.2
4,538,169	-		GFF4545	0.59	-0.4
4,538,173	+		GFF4545	0.59	+1.1
4,538,173	+		GFF4545	0.59	-1.1
4,538,174	-		GFF4545	0.59	-0.5
4,538,181	-		GFF4545	0.60	+0.4
4,538,181	-		GFF4545	0.60	-1.0
4,538,183	+		GFF4545	0.61	+0.2
4,538,202	-		GFF4545	0.64	-1.1
4,538,209	+		GFF4545	0.65	-0.0
4,538,212	-		GFF4545	0.65	-1.0
4,538,231	-		GFF4545	0.68	+0.2
4,538,250	+		GFF4545	0.71	-1.7
4,538,258	-		GFF4545	0.72	+1.0
4,538,269	-		GFF4545	0.74	-1.5
4,538,283	-		GFF4545	0.76	-1.1
4,538,299	+		GFF4545	0.78	-0.9
4,538,308	+		GFF4545	0.79	-0.1
4,538,308	+		GFF4545	0.79	+0.2
4,538,313	+		GFF4545	0.80	-0.0
4,538,316	-		GFF4545	0.81	-0.6
4,538,316	-		GFF4545	0.81	+1.6
4,538,316	-		GFF4545	0.81	-0.0
4,538,333	-		GFF4545	0.83	-0.6
4,538,333	-		GFF4545	0.83	-0.7
4,538,346	+		GFF4545	0.85	-2.4
4,538,352	-		GFF4545	0.86	-1.4
4,538,352	-		GFF4545	0.86	-2.5
4,538,364	+		GFF4545	0.88	-2.0
4,538,375	+		GFF4545	0.89	+0.2
4,538,385	+				-1.4
4,538,385	+				-0.2
4,538,387	-				-0.2
4,538,390	+				+0.1
4,538,390	+				+0.9
4,538,395	+				-0.9
4,538,398	-				+0.2
4,538,403	-				-0.4
4,538,403	-				-0.3
4,538,403	-				+0.0
4,538,442	+				-0.5
4,538,455	-				-1.1
4,538,455	-				-3.0
4,538,466	+				-1.6
4,538,466	+				-0.2
4,538,469	-				+0.0
4,538,474	-				-0.4
4,538,474	-				+0.3
4,538,474	-				+0.4
4,538,578	-				+1.1
4,538,612	+				+0.5
4,538,627	+				-0.1
4,538,627	+				-0.7
4,538,627	+				-1.2
4,538,627	+				+0.5
4,538,627	+				-0.2
4,538,627	+				+0.3
4,538,627	+				-0.2
4,538,627	+				+0.6
4,538,627	+				-0.0
4,538,631	+				-1.5
4,538,635	-				-2.0
4,538,635	-				-1.3
4,538,635	-				-0.8
4,538,635	-				+1.0
4,538,635	-				-0.1
4,538,635	-				-1.9
4,538,637	+				-1.9
4,538,645	-				+0.8
4,538,662	+		GFF4546	0.11	+0.2
4,538,667	-		GFF4546	0.13	-2.0
4,538,670	-		GFF4546	0.14	-0.0
4,538,684	+		GFF4546	0.17	+1.0
4,538,698	-		GFF4546	0.21	+0.5
4,538,707	-		GFF4546	0.24	+0.0
4,538,723	-		GFF4546	0.28	-3.1
4,538,726	+		GFF4546	0.29	-1.9
4,538,726	+		GFF4546	0.29	-0.4
4,538,726	+		GFF4546	0.29	-1.0
4,538,726	+		GFF4546	0.29	-1.0
4,538,726	+		GFF4546	0.29	-2.0
4,538,726	+		GFF4546	0.29	-0.2
4,538,726	+		GFF4546	0.29	-0.0
4,538,734	-		GFF4546	0.31	-1.6
4,538,734	-		GFF4546	0.31	+0.1
4,538,734	-		GFF4546	0.31	-0.4
4,538,734	-		GFF4546	0.31	+0.7
4,538,734	-		GFF4546	0.31	+0.9
4,538,734	-		GFF4546	0.31	-2.5
4,538,734	-		GFF4546	0.31	-1.3
4,538,747	+		GFF4546	0.35	+1.0
4,538,752	+		GFF4546	0.36	-1.0
4,538,755	+		GFF4546	0.37	-1.5
4,538,758	+		GFF4546	0.38	-1.6
4,538,761	-		GFF4546	0.39	-0.4
4,538,775	+		GFF4546	0.42	+0.0
4,538,775	+		GFF4546	0.42	-0.2
4,538,778	-		GFF4546	0.43	+0.5
4,538,778	-		GFF4546	0.43	+0.3
4,538,780	+		GFF4546	0.44	+1.1
4,538,780	+		GFF4546	0.44	-0.1
4,538,780	+		GFF4546	0.44	+1.4
4,538,780	+		GFF4546	0.44	+0.3
4,538,780	+		GFF4546	0.44	-1.9
4,538,783	-		GFF4546	0.45	-0.7
4,538,783	-		GFF4546	0.45	-0.8
4,538,783	-		GFF4546	0.45	-0.5
4,538,785	+		GFF4546	0.45	-1.7
4,538,785	+		GFF4546	0.45	-2.3
4,538,785	+		GFF4546	0.45	+0.8
4,538,785	+		GFF4546	0.45	+0.4
4,538,788	-		GFF4546	0.46	-1.3
4,538,788	-		GFF4546	0.46	-1.5
4,538,788	-		GFF4546	0.46	-2.5
4,538,788	-		GFF4546	0.46	-0.1
4,538,792	+		GFF4546	0.47	-0.5
4,538,793	-		GFF4546	0.47	-1.5
4,538,793	-		GFF4546	0.47	+0.1
4,538,793	-		GFF4546	0.47	+0.0
4,538,800	-		GFF4546	0.49	-2.0
4,538,812	+		GFF4546	0.52	-0.0
4,538,828	+		GFF4546	0.57	-0.3
4,538,830	+		GFF4546	0.57	+0.6
4,538,830	+		GFF4546	0.57	+0.8
4,538,836	-		GFF4546	0.59	-0.9
4,538,838	-		GFF4546	0.60	-0.8
4,538,845	+		GFF4546	0.61	-3.0
4,538,846	-		GFF4546	0.62	-1.3
4,538,848	+		GFF4546	0.62	-0.4
4,538,855	+		GFF4546	0.64	+0.7
4,538,871	-		GFF4546	0.69	-0.2
4,538,879	+		GFF4546	0.71	+0.6
4,538,889	+		GFF4546	0.73	-0.3
4,538,911	+		GFF4546	0.80	+0.3
4,538,911	+		GFF4546	0.80	-0.5
4,538,911	+		GFF4546	0.80	-0.9
4,538,911	+		GFF4546	0.80	-0.6
4,538,919	-		GFF4546	0.82	-0.0
4,538,926	+		GFF4546	0.84	-0.1
4,538,926	+		GFF4546	0.84	+0.3
4,538,926	+		GFF4546	0.84	-0.4
4,538,929	-		GFF4546	0.84	+0.1
4,538,935	-		GFF4546	0.86	+0.1
4,538,937	+		GFF4546	0.87	-0.4
4,538,937	+		GFF4546	0.87	-2.5
4,538,941	-		GFF4546	0.88	-1.3
4,538,947	+		GFF4546	0.89	-0.8
4,538,950	-				+0.0
4,538,952	+				-0.1
4,538,952	+				-1.2
4,538,952	+				+1.1
4,538,952	+				-0.5
4,538,952	+				+0.7
4,538,952	+				-0.9
4,538,952	+				-1.6
4,538,952	+				-0.2
4,538,952	+				+0.2
4,538,960	-				-2.0
4,538,960	-				-0.3
4,538,960	-				-0.5
4,538,960	-				+0.5
4,538,960	-				-2.4
4,538,960	-				-0.7
4,538,960	-				+0.1
4,538,960	-				-0.1
4,538,960	-				-0.9
4,538,969	+				-2.1
4,538,979	-				-1.7
4,539,019	-				+0.1
4,539,031	-				+0.6
4,539,033	+				+0.6
4,539,033	+				+1.0
4,539,041	-				-1.2
4,539,041	-				-0.2
4,539,057	+				-0.9
4,539,063	-				+0.9
4,539,064	+				+0.3
4,539,078	-				+0.2
4,539,099	+				-0.2
4,539,119	-		GFF4547	0.11	+1.0
4,539,120	-		GFF4547	0.11	-2.0
4,539,122	+		GFF4547	0.12	-1.1
4,539,128	+		GFF4547	0.13	+0.0
4,539,130	-		GFF4547	0.13	+0.4
4,539,136	+		GFF4547	0.15	-0.3
4,539,136	+		GFF4547	0.15	-1.6
4,539,144	-		GFF4547	0.17	-1.3
4,539,149	-		GFF4547	0.18	-0.5
4,539,149	-		GFF4547	0.18	-1.4
4,539,149	-		GFF4547	0.18	+0.7
4,539,162	+		GFF4547	0.21	-1.6
4,539,168	+		GFF4547	0.22	+0.4
4,539,168	+		GFF4547	0.22	-2.2
4,539,168	+		GFF4547	0.22	-1.5
4,539,168	+		GFF4547	0.22	+0.3
4,539,176	-		GFF4547	0.24	-1.3
4,539,176	-		GFF4547	0.24	-0.5
4,539,176	-		GFF4547	0.24	-2.0
4,539,188	+		GFF4547	0.27	-1.7
4,539,188	+		GFF4547	0.27	-1.4
4,539,188	+		GFF4547	0.27	+0.3
4,539,188	+		GFF4547	0.27	-0.5
4,539,196	-		GFF4547	0.29	+0.4
4,539,219	+		GFF4547	0.34	-0.0
4,539,234	+		GFF4547	0.38	-0.7
4,539,234	+		GFF4547	0.38	+0.8
4,539,241	-		GFF4547	0.39	-1.3
4,539,242	-		GFF4547	0.39	-3.3
4,539,253	-		GFF4547	0.42	-0.4
4,539,265	+		GFF4547	0.45	-0.5
4,539,275	+		GFF4547	0.47	+0.3
4,539,282	+		GFF4547	0.49	-0.3
4,539,288	-		GFF4547	0.50	-1.6
4,539,288	-		GFF4547	0.50	-0.6
4,539,310	-		GFF4547	0.55	-0.5
4,539,311	-		GFF4547	0.55	-1.8
4,539,320	+		GFF4547	0.57	+0.1
4,539,333	-		GFF4547	0.60	+0.1
4,539,333	-		GFF4547	0.60	+0.4
4,539,333	-		GFF4547	0.60	-0.9
4,539,333	-		GFF4547	0.60	-0.4
4,539,341	-		GFF4547	0.62	-1.4
4,539,346	+		GFF4547	0.63	+0.7
4,539,367	+		GFF4547	0.68	-0.6
4,539,439	-		GFF4547	0.85	-1.5
4,539,450	-		GFF4547	0.88	-1.1
4,539,459	+		GFF4547	0.90	+0.7
4,539,461	+				-0.4
4,539,469	-				+0.5
4,539,497	+				-2.6
4,539,500	-				-0.4
4,539,505	-				-0.9
4,539,505	-				-1.0
4,539,505	-				-0.9
4,539,505	-				+0.1
4,539,505	-				-0.4
4,539,511	+				-0.7
4,539,522	+				-1.4
4,539,527	+				+0.6
4,539,532	+				-1.5
4,539,532	+				-0.3
4,539,540	-				-0.2
4,539,540	-				-0.4
4,539,546	+				-0.8
4,539,554	-				+0.2
4,539,566	+				-0.6
4,539,566	+				-0.1
4,539,571	+				-0.7
4,539,571	+				-0.3
4,539,574	-				-0.4
4,539,574	-				-1.1
4,539,574	-				-0.7
4,539,574	-				-1.5
4,539,579	-				-2.0
4,539,579	-				+0.5
4,539,579	-				+0.3
4,539,579	-				+0.0
4,539,579	-				-0.4
4,539,579	-				+0.5
4,539,584	-				+0.1
4,539,585	+				-0.6
4,539,613	+		GFF4548	0.12	+0.1
4,539,623	+		GFF4548	0.14	-0.5
4,539,623	+		GFF4548	0.14	-1.2
4,539,623	+		GFF4548	0.14	-0.8
4,539,624	-		GFF4548	0.14	-0.4
4,539,626	+		GFF4548	0.14	-0.9
4,539,626	-		GFF4548	0.14	-1.9
4,539,631	+		GFF4548	0.14	+0.6
4,539,631	+		GFF4548	0.14	-1.0
4,539,631	+		GFF4548	0.14	-0.6
4,539,631	-		GFF4548	0.14	-0.6
4,539,631	-		GFF4548	0.14	-2.2
4,539,633	+		GFF4548	0.15	+0.4
4,539,639	-		GFF4548	0.15	-0.6
4,539,641	-		GFF4548	0.16	-1.3
4,539,643	+		GFF4548	0.16	-0.1
4,539,651	+		GFF4548	0.17	-1.8
4,539,658	-		GFF4548	0.17	-0.2
4,539,669	+		GFF4548	0.19	-1.0
4,539,675	-		GFF4548	0.19	+1.0
4,539,684	+		GFF4548	0.20	-2.7
4,539,689	+		GFF4548	0.21	+0.0
4,539,692	-		GFF4548	0.21	-2.0
4,539,694	+		GFF4548	0.21	-1.3
4,539,697	-		GFF4548	0.22	-0.5
4,539,697	-		GFF4548	0.22	-0.2
4,539,702	-		GFF4548	0.22	+0.8
4,539,702	-		GFF4548	0.22	+1.0
4,539,702	-		GFF4548	0.22	-0.7
4,539,705	+		GFF4548	0.23	+0.6
4,539,705	+		GFF4548	0.23	+0.3
4,539,705	+		GFF4548	0.23	-0.1
4,539,713	-		GFF4548	0.24	+1.2
4,539,713	-		GFF4548	0.24	+0.4
4,539,723	+		GFF4548	0.25	-2.0
4,539,723	+		GFF4548	0.25	-0.9
4,539,731	-		GFF4548	0.25	+0.2
4,539,731	-		GFF4548	0.25	-0.5
4,539,741	-		GFF4548	0.27	-0.3
4,539,749	-		GFF4548	0.27	+0.2
4,539,751	+		GFF4548	0.28	-0.9
4,539,751	+		GFF4548	0.28	-0.9
4,539,753	+		GFF4548	0.28	-0.6
4,539,753	+		GFF4548	0.28	+0.4
4,539,758	+		GFF4548	0.28	-2.0
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