Strain Fitness in Sphingobium sp. HT1-2 around GFF4430

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,423,927	-				-0.8
4,423,927	-				-0.1
4,423,928	+				+0.7
4,423,928	+				-2.0
4,423,936	+		GFF4429	0.11	+0.1
4,423,939	-		GFF4429	0.11	-1.6
4,423,968	+		GFF4429	0.14	-0.9
4,423,976	-		GFF4429	0.15	-1.5
4,423,993	-		GFF4429	0.16	-0.8
4,423,993	-		GFF4429	0.16	+0.2
4,423,994	+		GFF4429	0.17	-0.5
4,424,019	+		GFF4429	0.19	-1.0
4,424,021	+		GFF4429	0.19	-0.0
4,424,027	-		GFF4429	0.20	+1.2
4,424,028	-		GFF4429	0.20	-2.9
4,424,033	-		GFF4429	0.20	+0.4
4,424,033	-		GFF4429	0.20	-0.6
4,424,036	+		GFF4429	0.21	+0.5
4,424,037	+		GFF4429	0.21	-0.7
4,424,048	+		GFF4429	0.22	-0.5
4,424,048	+		GFF4429	0.22	+0.4
4,424,056	-		GFF4429	0.23	+0.7
4,424,056	-		GFF4429	0.23	+1.0
4,424,056	-		GFF4429	0.23	-0.6
4,424,056	-		GFF4429	0.23	+0.3
4,424,064	-		GFF4429	0.24	-0.9
4,424,070	-		GFF4429	0.24	-1.8
4,424,079	+		GFF4429	0.25	-1.5
4,424,083	-		GFF4429	0.26	-0.6
4,424,085	+		GFF4429	0.26	-0.4
4,424,095	+		GFF4429	0.27	-0.7
4,424,102	+		GFF4429	0.28	+0.1
4,424,120	+		GFF4429	0.29	-1.3
4,424,121	-		GFF4429	0.29	-0.2
4,424,130	-		GFF4429	0.30	+1.2
4,424,146	-		GFF4429	0.32	-0.2
4,424,148	+		GFF4429	0.32	-0.8
4,424,159	+		GFF4429	0.33	-0.3
4,424,162	+		GFF4429	0.34	+1.1
4,424,162	+		GFF4429	0.34	-2.0
4,424,167	+		GFF4429	0.34	+0.2
4,424,167	+		GFF4429	0.34	-0.8
4,424,167	+		GFF4429	0.34	-0.8
4,424,167	+		GFF4429	0.34	-0.3
4,424,167	+		GFF4429	0.34	-2.0
4,424,167	+		GFF4429	0.34	+0.7
4,424,167	+		GFF4429	0.34	-0.2
4,424,167	+		GFF4429	0.34	+0.1
4,424,167	+		GFF4429	0.34	-1.4
4,424,167	+		GFF4429	0.34	-0.6
4,424,167	+		GFF4429	0.34	-0.4
4,424,167	+		GFF4429	0.34	-0.3
4,424,167	+		GFF4429	0.34	+0.9
4,424,167	+		GFF4429	0.34	-1.6
4,424,167	+		GFF4429	0.34	+0.3
4,424,167	+		GFF4429	0.34	-1.3
4,424,167	+		GFF4429	0.34	+0.3
4,424,175	-		GFF4429	0.35	-2.7
4,424,175	-		GFF4429	0.35	+0.5
4,424,175	-		GFF4429	0.35	-2.1
4,424,175	-		GFF4429	0.35	-2.4
4,424,175	-		GFF4429	0.35	-0.6
4,424,175	-		GFF4429	0.35	-1.8
4,424,175	-		GFF4429	0.35	-0.4
4,424,175	-		GFF4429	0.35	+0.8
4,424,175	-		GFF4429	0.35	+0.9
4,424,175	-		GFF4429	0.35	+0.4
4,424,175	-		GFF4429	0.35	+0.2
4,424,175	-		GFF4429	0.35	-1.2
4,424,175	-		GFF4429	0.35	+0.4
4,424,186	-		GFF4429	0.36	-1.9
4,424,186	-		GFF4429	0.36	-0.1
4,424,187	+		GFF4429	0.36	-2.1
4,424,187	+		GFF4429	0.36	-2.4
4,424,187	+		GFF4429	0.36	+0.9
4,424,195	-		GFF4429	0.37	+1.0
4,424,195	-		GFF4429	0.37	-1.4
4,424,195	-		GFF4429	0.37	-0.1
4,424,200	-		GFF4429	0.38	-0.3
4,424,204	+		GFF4429	0.38	-1.1
4,424,220	+		GFF4429	0.40	-0.6
4,424,220	+		GFF4429	0.40	+0.2
4,424,220	+		GFF4429	0.40	+0.4
4,424,220	+		GFF4429	0.40	+1.3
4,424,220	+		GFF4429	0.40	+1.3
4,424,220	+		GFF4429	0.40	+0.6
4,424,220	+		GFF4429	0.40	-1.0
4,424,220	+		GFF4429	0.40	-0.1
4,424,220	+		GFF4429	0.40	-1.9
4,424,220	+		GFF4429	0.40	-0.1
4,424,228	-		GFF4429	0.40	-0.4
4,424,228	-		GFF4429	0.40	+0.7
4,424,228	-		GFF4429	0.40	-0.0
4,424,228	-		GFF4429	0.40	-0.7
4,424,228	-		GFF4429	0.40	+0.4
4,424,228	-		GFF4429	0.40	-1.3
4,424,228	-		GFF4429	0.40	+0.2
4,424,239	+		GFF4429	0.41	+1.0
4,424,239	+		GFF4429	0.41	-0.6
4,424,239	+		GFF4429	0.41	+0.7
4,424,247	-		GFF4429	0.42	-0.7
4,424,249	+		GFF4429	0.43	-0.4
4,424,251	+		GFF4429	0.43	-1.2
4,424,252	+		GFF4429	0.43	-0.5
4,424,252	+		GFF4429	0.43	-0.1
4,424,260	-		GFF4429	0.44	+0.5
4,424,278	-		GFF4429	0.45	-0.6
4,424,278	-		GFF4429	0.45	+0.5
4,424,288	+		GFF4429	0.46	+0.7
4,424,288	+		GFF4429	0.46	-0.4
4,424,307	-		GFF4429	0.48	+0.4
4,424,315	+		GFF4429	0.49	-0.4
4,424,323	-		GFF4429	0.50	-0.2
4,424,329	+		GFF4429	0.51	-0.0
4,424,341	+		GFF4429	0.52	+1.5
4,424,349	-		GFF4429	0.53	-0.5
4,424,380	+		GFF4429	0.56	-0.1
4,424,380	+		GFF4429	0.56	+0.6
4,424,388	-		GFF4429	0.57	+0.2
4,424,390	+		GFF4429	0.57	+1.5
4,424,400	+		GFF4429	0.58	-0.3
4,424,403	-		GFF4429	0.58	-0.2
4,424,409	+		GFF4429	0.59	+1.3
4,424,422	-		GFF4429	0.60	+0.1
4,424,429	+		GFF4429	0.61	-0.5
4,424,434	+		GFF4429	0.61	-1.9
4,424,440	+		GFF4429	0.62	-0.0
4,424,440	+		GFF4429	0.62	-0.4
4,424,440	+		GFF4429	0.62	-0.3
4,424,440	+		GFF4429	0.62	-0.3
4,424,442	-		GFF4429	0.62	-0.5
4,424,442	-		GFF4429	0.62	-0.3
4,424,448	-		GFF4429	0.63	+0.1
4,424,448	-		GFF4429	0.63	-2.2
4,424,450	+		GFF4429	0.63	-1.1
4,424,457	+		GFF4429	0.64	+0.4
4,424,462	+		GFF4429	0.64	+0.2
4,424,465	-		GFF4429	0.65	-0.0
4,424,465	-		GFF4429	0.65	+1.4
4,424,475	-		GFF4429	0.66	+0.7
4,424,498	+		GFF4429	0.68	-0.2
4,424,499	-		GFF4429	0.68	+0.1
4,424,513	+		GFF4429	0.69	-0.3
4,424,566	-		GFF4429	0.75	-2.3
4,424,580	+		GFF4429	0.76	+0.7
4,424,580	+		GFF4429	0.76	+1.5
4,424,588	-		GFF4429	0.77	-0.0
4,424,595	+		GFF4429	0.78	+0.5
4,424,595	+		GFF4429	0.78	-1.0
4,424,595	+		GFF4429	0.78	-0.1
4,424,595	+		GFF4429	0.78	-0.9
4,424,595	+		GFF4429	0.78	-0.0
4,424,603	-		GFF4429	0.79	+1.4
4,424,603	-		GFF4429	0.79	-1.1
4,424,613	-		GFF4429	0.80	+1.1
4,424,631	-		GFF4429	0.81	+1.2
4,424,642	+		GFF4429	0.83	+0.3
4,424,670	+		GFF4429	0.85	+0.2
4,424,678	-		GFF4429	0.86	+0.2
4,424,693	+		GFF4429	0.88	-2.5
4,424,694	+		GFF4429	0.88	-0.9
4,424,702	-		GFF4429	0.89	-1.0
4,424,704	+		GFF4429	0.89	+0.6
4,424,704	+		GFF4429	0.89	-2.0
4,424,710	+		GFF4429	0.90	-1.7
4,424,710	+		GFF4429	0.90	-0.5
4,424,712	-		GFF4429	0.90	-1.8
4,424,718	-				-2.4
4,424,739	+				+0.6
4,424,742	+				+0.7
4,424,742	+				+0.4
4,424,788	+				+0.0
4,424,788	+				+0.1
4,424,796	-				-1.0
4,424,796	-				-1.7
4,424,796	-				+0.4
4,424,801	+				-1.3
4,424,811	+				+0.4
4,424,814	-				+0.4
4,424,814	-				-0.1
4,424,819	-				+0.0
4,424,819	-				+0.2
4,424,836	+				+1.2
4,424,840	-				-0.8
4,424,875	-				+0.3
4,424,880	-				-0.2
4,424,898	+				-0.1
4,424,908	+				+0.8
4,424,908	+				-0.9
4,424,914	+				-1.8
4,424,914	+				+0.0
4,424,914	+				-0.2
4,424,916	-				+0.8
4,424,922	-				-1.0
4,424,951	-				-0.4
4,424,951	-				-0.3
4,424,956	+				+0.5
4,424,956	+				-1.0
4,424,956	+				+0.5
4,424,956	+				+0.8
4,424,956	+				-0.8
4,424,956	+				-0.2
4,424,956	+				-2.1
4,424,956	+				-1.6
4,424,964	-				-0.7
4,424,964	-				+1.2
4,424,964	-				+0.3
4,424,964	-				+0.6
4,424,964	-				-1.9
4,424,964	-				-0.4
4,424,964	-				-0.2
4,424,964	-				-1.8
4,424,964	-				-0.2
4,424,964	-				-0.1
4,424,964	-				-0.4
4,424,982	+				+1.2
4,424,982	+				-0.8
4,424,990	-				-2.2
4,424,992	+				-0.7
4,424,995	-				-0.3
4,425,010	+		GFF4430	0.11	-0.2
4,425,010	+		GFF4430	0.11	+0.1
4,425,010	+		GFF4430	0.11	-1.4
4,425,010	+		GFF4430	0.11	-0.4
4,425,010	+		GFF4430	0.11	-2.0
4,425,015	+		GFF4430	0.11	-1.8
4,425,015	+		GFF4430	0.11	-1.6
4,425,015	+		GFF4430	0.11	-0.9
4,425,015	+		GFF4430	0.11	-1.3
4,425,015	+		GFF4430	0.11	-0.2
4,425,015	+		GFF4430	0.11	+0.1
4,425,015	+		GFF4430	0.11	-1.4
4,425,015	+		GFF4430	0.11	-0.5
4,425,018	-		GFF4430	0.12	-0.7
4,425,018	-		GFF4430	0.12	+0.5
4,425,018	-		GFF4430	0.12	+0.2
4,425,018	-		GFF4430	0.12	-0.2
4,425,018	-		GFF4430	0.12	+0.8
4,425,023	-		GFF4430	0.12	+0.4
4,425,023	-		GFF4430	0.12	-2.0
4,425,023	-		GFF4430	0.12	-1.0
4,425,023	-		GFF4430	0.12	+0.4
4,425,023	-		GFF4430	0.12	-0.7
4,425,023	-		GFF4430	0.12	-0.0
4,425,023	-		GFF4430	0.12	-0.7
4,425,023	-		GFF4430	0.12	-1.6
4,425,023	-		GFF4430	0.12	+0.3
4,425,023	-		GFF4430	0.12	+0.2
4,425,023	-		GFF4430	0.12	-2.4
4,425,027	+		GFF4430	0.12	+0.4
4,425,031	-		GFF4430	0.13	-0.7
4,425,039	+		GFF4430	0.14	-0.8
4,425,047	+		GFF4430	0.15	-0.9
4,425,047	+		GFF4430	0.15	+0.6
4,425,047	+		GFF4430	0.15	-0.7
4,425,055	-		GFF4430	0.15	-0.4
4,425,057	+		GFF4430	0.16	-0.1
4,425,057	+		GFF4430	0.16	+1.3
4,425,057	+		GFF4430	0.16	-1.7
4,425,057	+		GFF4430	0.16	-1.3
4,425,063	+		GFF4430	0.16	+0.8
4,425,065	-		GFF4430	0.17	+0.5
4,425,065	-		GFF4430	0.17	+0.2
4,425,076	+		GFF4430	0.18	-1.8
4,425,076	-		GFF4430	0.18	-1.6
4,425,086	-		GFF4430	0.19	-1.0
4,425,094	+		GFF4430	0.20	+0.3
4,425,140	+		GFF4430	0.25	+0.3
4,425,140	+		GFF4430	0.25	+0.6
4,425,140	+		GFF4430	0.25	-0.8
4,425,148	-		GFF4430	0.25	-1.1
4,425,148	-		GFF4430	0.25	-1.2
4,425,148	-		GFF4430	0.25	-0.8
4,425,148	-		GFF4430	0.25	+0.6
4,425,148	-		GFF4430	0.25	+1.5
4,425,150	+		GFF4430	0.26	-0.5
4,425,153	-		GFF4430	0.26	+1.1
4,425,153	-		GFF4430	0.26	+0.2
4,425,155	+		GFF4430	0.26	+1.1
4,425,158	-		GFF4430	0.27	-2.4
4,425,158	-		GFF4430	0.27	-1.8
4,425,158	-		GFF4430	0.27	-2.0
4,425,160	+		GFF4430	0.27	+0.6
4,425,205	+		GFF4430	0.32	-0.8
4,425,210	+		GFF4430	0.32	-1.0
4,425,212	+		GFF4430	0.32	+0.6
4,425,212	+		GFF4430	0.32	-0.1
4,425,212	+		GFF4430	0.32	+1.6
4,425,212	+		GFF4430	0.32	-0.3
4,425,212	+		GFF4430	0.32	-0.8
4,425,212	+		GFF4430	0.32	-0.1
4,425,212	+		GFF4430	0.32	-0.2
4,425,212	+		GFF4430	0.32	-2.6
4,425,212	+		GFF4430	0.32	-0.1
4,425,212	+		GFF4430	0.32	+0.6
4,425,212	+		GFF4430	0.32	-0.7
4,425,217	+		GFF4430	0.33	+0.4
4,425,220	-		GFF4430	0.33	-1.0
4,425,220	-		GFF4430	0.33	+0.4
4,425,220	-		GFF4430	0.33	-0.2
4,425,220	-		GFF4430	0.33	-0.2
4,425,220	-		GFF4430	0.33	-0.0
4,425,220	-		GFF4430	0.33	+0.4
4,425,220	-		GFF4430	0.33	+0.2
4,425,220	-		GFF4430	0.33	-2.7
4,425,220	-		GFF4430	0.33	+0.1
4,425,220	-		GFF4430	0.33	-0.2
4,425,238	+		GFF4430	0.35	+0.2
4,425,245	-		GFF4430	0.36	+0.4
4,425,255	+		GFF4430	0.37	-0.1
4,425,255	+		GFF4430	0.37	-0.5
4,425,260	+		GFF4430	0.38	-0.3
4,425,263	-		GFF4430	0.38	-0.2
4,425,263	-		GFF4430	0.38	+0.2
4,425,268	-		GFF4430	0.38	-0.4
4,425,268	-		GFF4430	0.38	-1.0
4,425,268	-		GFF4430	0.38	-1.1
4,425,268	-		GFF4430	0.38	+0.4
4,425,268	-		GFF4430	0.38	+1.3
4,425,268	-		GFF4430	0.38	+0.3
4,425,288	+		GFF4430	0.41	-0.8
4,425,288	+		GFF4430	0.41	+0.2
4,425,309	+		GFF4430	0.43	-0.7
4,425,315	-		GFF4430	0.43	-0.9
4,425,321	+		GFF4430	0.44	+0.9
4,425,321	+		GFF4430	0.44	-0.1
4,425,326	+		GFF4430	0.45	-0.6
4,425,329	-		GFF4430	0.45	-0.9
4,425,333	+		GFF4430	0.45	-0.4
4,425,334	-		GFF4430	0.45	+0.8
4,425,334	-		GFF4430	0.45	-0.7
4,425,388	-		GFF4430	0.51	-2.4
4,425,393	+		GFF4430	0.52	-0.1
4,425,397	-		GFF4430	0.52	+0.1
4,425,401	-		GFF4430	0.53	-0.4
4,425,402	-		GFF4430	0.53	-0.6
4,425,433	+		GFF4430	0.56	-0.2
4,425,433	+		GFF4430	0.56	-0.3
4,425,436	-		GFF4430	0.56	-1.6
4,425,445	-		GFF4430	0.57	-0.7
4,425,451	+		GFF4430	0.58	-0.2
4,425,463	+		GFF4430	0.59	-2.0
4,425,470	+		GFF4430	0.60	-0.0
4,425,471	-		GFF4430	0.60	+0.1
4,425,477	+		GFF4430	0.61	+0.4
4,425,478	-		GFF4430	0.61	-1.2
4,425,485	+		GFF4430	0.62	-1.4
4,425,486	-		GFF4430	0.62	-2.6
4,425,487	+		GFF4430	0.62	-0.8
4,425,508	-		GFF4430	0.64	-0.8
4,425,513	+		GFF4430	0.65	+0.6
4,425,524	+		GFF4430	0.66	-0.5
4,425,529	+		GFF4430	0.66	-0.9
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4,425,555	-		GFF4430	0.69	-0.3
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4,425,558	+		GFF4430	0.70	-1.9
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4,425,566	-		GFF4430	0.70	+0.3
4,425,566	-		GFF4430	0.70	+0.2
4,425,566	-		GFF4430	0.70	+0.5
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4,425,566	-		GFF4430	0.70	-0.4
4,425,566	-		GFF4430	0.70	-0.0
4,425,566	-		GFF4430	0.70	-0.0
4,425,566	-		GFF4430	0.70	-0.5
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4,425,568	+		GFF4430	0.71	-1.0
4,425,568	+		GFF4430	0.71	-0.9
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4,425,568	+		GFF4430	0.71	-0.4
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4,425,576	-		GFF4430	0.72	+0.8
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4,425,576	-		GFF4430	0.72	+0.5
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4,425,576	-		GFF4430	0.72	-1.0
4,425,576	-		GFF4430	0.72	-0.1
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4,425,627	+		GFF4430	0.77	+0.1
4,425,627	+		GFF4430	0.77	+0.0
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4,425,632	+		GFF4430	0.78	+0.8
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4,425,640	-		GFF4430	0.78	-1.6
4,425,660	+		GFF4430	0.81	-0.4
4,425,660	+		GFF4430	0.81	-1.5
4,425,660	+		GFF4430	0.81	-0.3
4,425,660	+		GFF4430	0.81	+0.8
4,425,660	+		GFF4430	0.81	-0.6
4,425,660	+		GFF4430	0.81	+0.8
4,425,663	-		GFF4430	0.81	-1.0
4,425,668	-		GFF4430	0.81	+0.6
4,425,668	-		GFF4430	0.81	-2.2
4,425,668	-		GFF4430	0.81	-1.4
4,425,668	-		GFF4430	0.81	+0.5
4,425,692	+		GFF4430	0.84	+0.8
4,425,692	+		GFF4430	0.84	+0.2
4,425,700	-		GFF4430	0.85	+0.2
4,425,700	-		GFF4430	0.85	-0.0
4,425,707	+		GFF4430	0.86	-2.0
4,425,707	+		GFF4430	0.86	+1.8
4,425,715	-		GFF4430	0.86	+1.3
4,425,719	+		GFF4430	0.87	+0.6
4,425,719	+		GFF4430	0.87	+1.5
4,425,727	-		GFF4430	0.88	+0.3
4,425,758	+				+0.6
4,425,786	-				+0.1
4,425,796	+				+0.2
4,425,796	+				-0.6
4,425,796	+				-0.9
4,425,796	+				+0.8
4,425,796	+				-1.1
4,425,796	+				-0.8
4,425,801	+				-0.3
4,425,801	+				+0.8
4,425,804	-				-2.1
4,425,804	-				-0.8
4,425,804	-				-0.6
4,425,804	-				+0.4
4,425,806	+				+0.2
4,425,806	+				-1.3
4,425,806	+				-0.2
4,425,806	+				-1.5
4,425,814	-				+2.0
4,425,814	-				-2.1
4,425,814	-				-0.7
4,425,814	-				+0.6
4,425,819	-				-0.1
4,425,834	-				-0.2
4,425,878	+				+0.2
4,425,878	+				-0.5
4,425,878	+				+0.4
4,425,892	+				-0.7
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4,425,912	+		GFF4431	0.14	-1.1
4,425,912	+		GFF4431	0.14	+1.4
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4,425,920	-		GFF4431	0.16	-2.0
4,425,920	-		GFF4431	0.16	-0.3
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4,425,925	-		GFF4431	0.17	-1.1
4,425,925	-		GFF4431	0.17	+0.6
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4,425,940	+		GFF4431	0.21	+0.9
4,425,940	+		GFF4431	0.21	-0.8
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4,425,948	-		GFF4431	0.23	-1.5
4,425,969	+		GFF4431	0.28	-1.8
4,425,969	+		GFF4431	0.28	-0.5
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4,425,977	-		GFF4431	0.30	+0.3
4,425,977	-		GFF4431	0.30	+0.2
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4,426,007	+		GFF4431	0.37	+0.6
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4,426,019	+		GFF4431	0.40	+0.4
4,426,019	+		GFF4431	0.40	-0.6
4,426,019	+		GFF4431	0.40	+0.6
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4,426,032	-		GFF4431	0.43	-1.4
4,426,034	+		GFF4431	0.43	-0.5
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4,426,062	+		GFF4431	0.50	+0.4
4,426,068	+		GFF4431	0.51	-1.7
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4,426,088	+		GFF4431	0.56	-0.3
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4,426,098	+		GFF4431	0.59	+0.2
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4,426,155	+		GFF4431	0.72	-0.4
4,426,155	+		GFF4431	0.72	-0.6
4,426,155	+		GFF4431	0.72	-0.5
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4,426,209	+		GFF4431	0.85	-1.3
4,426,209	+		GFF4431	0.85	-1.9
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4,426,217	-		GFF4431	0.87	-0.3
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4,426,224	+		GFF4431	0.89	-0.2
4,426,224	+		GFF4431	0.89	+0.8
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4,426,232	-				-0.5
4,426,238	-				-0.8
4,426,239	+				-2.0
4,426,239	+				+0.2
4,426,247	-				+0.0
4,426,247	-				-0.3
4,426,260	+				+1.0
4,426,260	+				+0.4
4,426,268	-				+0.0
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4,426,276	+				+0.8
4,426,276	+				-1.9
4,426,276	+				-2.7
4,426,276	+				-2.4
4,426,276	+				+1.6
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4,426,305	+				+0.7
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4,426,459	-		GFF4432	0.29	-0.1
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4,426,590	-		GFF4432	0.48	-0.1
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